Electrodes.hpp

/*

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*/

#ifndef ELECTRODES_HPP_
#define ELECTRODES_HPP_

#include <boost/shared_ptr.hpp>
#include "ChasteSerialization.hpp"
#include <boost/serialization/split_member.hpp>
#include <boost/serialization/shared_ptr.hpp>

#include "AbstractTetrahedralMesh.hpp"
#include "DistributedVector.hpp"
#include "BoundaryConditionsContainer.hpp"
#include "ConstBoundaryCondition.hpp"

template<unsigned DIM>
class Electrodes
{
friend class TestBidomainWithBathProblem;
friend class TestElectrodes;

private:
    bool mGroundSecondElectrode;
    boost::shared_ptr<BoundaryConditionsContainer<DIM,DIM,2> > mpBoundaryConditionsContainer;
    double mStartTime;
    double mEndTime;
    bool mAreActive;
    AbstractTetrahedralMesh<DIM,DIM>* mpMesh;

    double mLeftElectrodeArea;

    double mRightElectrodeArea;

    void ComputeElectrodesAreasAndCheckEquality(unsigned index, double lowerValue, double upperValue);

    friend class boost::serialization::access;
    template<class Archive>
    void save(Archive & archive, const unsigned int version) const
    {
        archive & mGroundSecondElectrode;
        archive & mStartTime;
        archive & mEndTime;
        archive & mAreActive;
        archive & mpMesh;
        (*ProcessSpecificArchive<Archive>::Get()) & mpBoundaryConditionsContainer;
    }
    template<class Archive>
    void load(Archive & archive, const unsigned int version)
    {
        archive & mGroundSecondElectrode;
        archive & mStartTime;
        archive & mEndTime;
        archive & mAreActive;
        archive & mpMesh;

        (*ProcessSpecificArchive<Archive>::Get()) & mpBoundaryConditionsContainer;
        assert(mpBoundaryConditionsContainer);
        // Allow the new object to load itself from the archive.
        mpBoundaryConditionsContainer->LoadFromArchive(*ProcessSpecificArchive<Archive>::Get(), mpMesh);
    }
    BOOST_SERIALIZATION_SPLIT_MEMBER()

    
    Electrodes(){};

public:


    Electrodes(AbstractTetrahedralMesh<DIM,DIM>& rMesh); // implemented in cpp

    boost::shared_ptr<BoundaryConditionsContainer<DIM,DIM,2> > GetBoundaryConditionsContainer();

    bool SwitchOff(double time);

    bool SwitchOn(double time);

    double GetSwitchOnTime()
    {
        return mStartTime;
    }

    double GetSwitchOffTime()
    {
        return mEndTime;
    }

    bool HasGroundedElectrode()
    {
        return mGroundSecondElectrode;
    }
};

#include "SerializationExportWrapper.hpp"
EXPORT_TEMPLATE_CLASS_SAME_DIMS(Electrodes)

#endif /*ELECTRODES_HPP_*/