MonodomainProblem.hpp

00001 /*
00002 
00003 Copyright (c) 2005-2015, University of Oxford.
00004 All rights reserved.
00005 
00006 University of Oxford means the Chancellor, Masters and Scholars of the
00007 University of Oxford, having an administrative office at Wellington
00008 Square, Oxford OX1 2JD, UK.
00009 
00010 This file is part of Chaste.
00011 
00012 Redistribution and use in source and binary forms, with or without
00013 modification, are permitted provided that the following conditions are met:
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00015    this list of conditions and the following disclaimer.
00016  * Redistributions in binary form must reproduce the above copyright notice,
00017    this list of conditions and the following disclaimer in the documentation
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00022 
00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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00034 */
00035 
00036 
00037 #ifndef MONODOMAINPROBLEM_HPP_
00038 #define MONODOMAINPROBLEM_HPP_
00039 
00040 #include "ChasteSerialization.hpp"
00041 #include <boost/serialization/base_object.hpp>
00042 
00043 #include "AbstractCardiacProblem.hpp"
00044 #include "AbstractCardiacTissue.hpp"
00045 #include "AbstractDynamicLinearPdeSolver.hpp"
00046 #include "AbstractCardiacCellFactory.hpp"
00047 #include "MonodomainTissue.hpp"
00048 
00049 
00053 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
00054 class MonodomainProblem : public AbstractCardiacProblem<ELEMENT_DIM, SPACE_DIM, 1>
00055 {
00057     friend class boost::serialization::access;
00064     template<class Archive>
00065     void serialize(Archive & archive, const unsigned int version)
00066     {
00067         archive & boost::serialization::base_object<AbstractCardiacProblem<ELEMENT_DIM, SPACE_DIM, 1> >(*this);
00068         archive & mpMonodomainTissue;
00069     }
00070 
00071 protected:
00073     MonodomainTissue<ELEMENT_DIM,SPACE_DIM>* mpMonodomainTissue;
00074 
00075 public:
00077     AbstractCardiacTissue<ELEMENT_DIM, SPACE_DIM>* CreateCardiacTissue();
00078 
00080     AbstractDynamicLinearPdeSolver<ELEMENT_DIM, SPACE_DIM, 1>* CreateSolver();
00081 
00082 public:
00088     MonodomainProblem(AbstractCardiacCellFactory<ELEMENT_DIM,SPACE_DIM>* pCellFactory);
00089 
00093     MonodomainProblem();
00094 
00098     virtual ~MonodomainProblem();
00099 
00101     MonodomainTissue<ELEMENT_DIM,SPACE_DIM> * GetMonodomainTissue();
00102 
00108     void WriteInfo(double time);
00109 
00114     virtual void DefineWriterColumns(bool extending);
00115 
00123     virtual void WriteOneStep(double time, Vec voltageVec);
00124 
00125 };
00126 
00127 #include "SerializationExportWrapper.hpp" // Must be last
00128 EXPORT_TEMPLATE_CLASS2(MonodomainProblem, 1, 1)
00129 EXPORT_TEMPLATE_CLASS2(MonodomainProblem, 1, 2)
00130 EXPORT_TEMPLATE_CLASS2(MonodomainProblem, 1, 3)
00131 EXPORT_TEMPLATE_CLASS2(MonodomainProblem, 2, 2)
00132 EXPORT_TEMPLATE_CLASS2(MonodomainProblem, 3, 3)
00133 
00134 #endif /*MONODOMAINPROBLEM_HPP_*/