Toroidal2dVertexMesh.hpp

00001 /*
00002 
00003 Copyright (c) 2005-2015, University of Oxford.
00004 All rights reserved.
00005 
00006 University of Oxford means the Chancellor, Masters and Scholars of the
00007 University of Oxford, having an administrative office at Wellington
00008 Square, Oxford OX1 2JD, UK.
00009 
00010 This file is part of Chaste.
00011 
00012 Redistribution and use in source and binary forms, with or without
00013 modification, are permitted provided that the following conditions are met:
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00015    this list of conditions and the following disclaimer.
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00022 
00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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00034 */
00035 
00036 #ifndef TOROIDAL2DVERTEXMESH_HPP_
00037 #define TOROIDAL2DVERTEXMESH_HPP_
00038 
00039 #include "ChasteSerialization.hpp"
00040 #include <boost/serialization/base_object.hpp>
00041 
00042 #include "MutableVertexMesh.hpp"
00043 
00053 class Toroidal2dVertexMesh : public MutableVertexMesh<2,2>
00054 {
00055     friend class TestToroidal2dVertexMesh;
00056 
00057 private:
00058 
00060     double mWidth;
00061 
00063     double mHeight;
00064 
00066     friend class boost::serialization::access;
00077     template<class Archive>
00078     void serialize(Archive & archive, const unsigned int version)
00079     {
00080         archive & boost::serialization::base_object<MutableVertexMesh<2,2> >(*this);
00081         archive & mWidth;
00082         archive & mHeight;
00083     }
00084 
00088     Toroidal2dVertexMesh();
00089 
00090 public:
00091 
00102     Toroidal2dVertexMesh(double width,
00103                          double height,
00104                          std::vector<Node<2>*> nodes,
00105                          std::vector<VertexElement<2,2>*> vertexElements,
00106                          double cellRearrangementThreshold=0.01,
00107                          double t2Threshold=0.001);
00108 
00112     ~Toroidal2dVertexMesh();
00113 
00125     c_vector<double, 2> GetVectorFromAtoB(const c_vector<double, 2>& rLocation1, const c_vector<double, 2>& rLocation2);
00126 
00136     void SetNode(unsigned nodeIndex, ChastePoint<2> point);
00137 
00147     double GetWidth(const unsigned& rDimension) const;
00148 
00156     unsigned AddNode(Node<2>* pNewNode);
00157 
00165      MutableVertexMesh<2, 2>* GetMeshForVtk();
00166 };
00167 
00168 #include "SerializationExportWrapper.hpp"
00169 CHASTE_CLASS_EXPORT(Toroidal2dVertexMesh)
00170 
00171 #endif /*TOROIDAL2DVERTEXMESH_HPP_*/

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