AbstractAlgebraicContractionModel
AbstractAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, INTERPOLATION_LEVEL >
AbstractBackwardEulerCardiacCell< SIZE >
AbstractBackwardEulerCardiacCell< 0u >
AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >
AbstractBoundaryCondition< SPACE_DIM >
AbstractBoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM >
AbstractCardiacCellWithModifiers< CARDIAC_CELL >
AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >
AbstractCardiacMechanicsSolverInterface< DIM >
AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
AbstractCellBasedSimulationModifier< ELEMENT_DIM, SPACE_DIM >
AbstractCellBasedWithTimingsTestSuite
AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
AbstractCellCycleModelOdeSolver
AbstractCellKiller< SPACE_DIM >
AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::Iterator
AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >
AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >
AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >
AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >
AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
AbstractChasteRegion< SPACE_DIM >
AbstractCompressibleMaterialLaw< DIM >
AbstractConductivityModifier< ELEMENT_DIM, SPACE_DIM >
AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM >
AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >
AbstractContinuumMechanicsSolver< DIM >
AbstractContractionCellFactory< DIM >
AbstractConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
AbstractDynamicallyLoadableEntity
AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
AbstractElement< ELEMENT_DIM, SPACE_DIM >
AbstractExtendedBidomainSolver< ELEMENT_DIM, SPACE_DIM >
AbstractFeAssemblerInterface< CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >
AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
AbstractForce< ELEMENT_DIM, SPACE_DIM >
AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
AbstractGeneralizedRushLarsenCardiacCell
AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >
AbstractIncompressibleMaterialLaw< DIM >
AbstractIsotropicCompressibleMaterialLaw< DIM >
AbstractIsotropicIncompressibleMaterialLaw< DIM >
AbstractLinearEllipticPde< ELEMENT_DIM, SPACE_DIM >
AbstractLinearParabolicPde< ELEMENT_DIM, SPACE_DIM >
AbstractLinearParabolicPdeSystemForCoupledOdeSystem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
AbstractLookupTableCollection::EventHandler
AbstractMesh< ELEMENT_DIM, SPACE_DIM >
AbstractMesh< ELEMENT_DIM, SPACE_DIM >::NodeIterator
AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >::ElementIterator
AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >::NodeIterator
AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
AbstractNonlinearAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
AbstractNonlinearElasticitySolver< DIM >
AbstractNonlinearEllipticPde< SPACE_DIM >
AbstractOdeBasedCellCycleModel
AbstractOdeBasedContractionModel
AbstractOdeSystemForCoupledPdeSystem
AbstractOdeSystemWithAnalyticJacobian
AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
AbstractOnLatticeCellPopulation< DIM >
AbstractParameterisedSystem< VECTOR >
AbstractPerElementWriter< ELEMENT_DIM, SPACE_DIM, DATA_SIZE >
AbstractPottsUpdateRule< DIM >
AbstractPurkinjeCellFactory< ELEMENT_DIM, SPACE_DIM >
AbstractSimpleGenerationBasedCellCycleModel
AbstractStaticLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
AbstractStimulusFactory< ELEMENT_DIM, SPACE_DIM >
AbstractTargetAreaModifier< DIM >
AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >
AbstractTetrahedralElement< 0, SPACE_DIM >
AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ElementIterator
AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
AbstractTimeAdaptivityController
AbstractTwoBodyInteractionForce< ELEMENT_DIM, SPACE_DIM >
AbstractUntemplatedCardiacProblem
AbstractUntemplatedConvergenceTester
AbstractUntemplatedParameterisedSystem
AbstractVanLeeuwen2009WntSwatCellCycleModel
AbstractVertexBasedDivisionRule< SPACE_DIM >
AbstractWntOdeBasedCellCycleModel
AdhesionPottsUpdateRule< DIM >
Alarcon2004OxygenBasedCellCycleModel
Alarcon2004OxygenBasedCellCycleOdeSystem
ApoptoticCellKiller< SPACE_DIM >
ArchiveOpener< Archive, Stream >
AxisymmetricConductivityTensors< ELEMENT_DIM, SPACE_DIM >
BathCellFactory< DIM, CELLTYPE >
BetaCateninOneHitCellMutationState
BidomainAssembler< ELEMENT_DIM, SPACE_DIM >
BidomainCorrectionTermAssembler< ELEM_DIM, SPACE_DIM >
BidomainMassMatrixAssembler< DIM >
BidomainNeumannSurfaceTermAssembler< ELEMENT_DIM, SPACE_DIM >
BidomainSolver< ELEMENT_DIM, SPACE_DIM >
BidomainWithBathAssembler< ELEMENT_DIM, SPACE_DIM >
BidomainWithBathProblem< DIM >
boost::random::detail::normal_table< RealType >
boost::random::detail::unit_normal_distribution< RealType >
boost::random::normal_distribution_v156< RealType >
boost::random::normal_distribution_v156< RealType >::param_type
boost::serialization::version< AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > >
boost::serialization::version< AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM > >
boost::serialization::version< AbstractChasteRegion< SPACE_DIM > >
boost::serialization::version< AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > >
BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
BoundaryElement< ELEMENT_DIM, SPACE_DIM >
BoundaryNodeWriter< ELEMENT_DIM, SPACE_DIM >
CardiacElectroMechanicsProblem< DIM, ELEC_PROB_DIM >
CardiacElectroMechProbRegularGeom< DIM >
CardiacNewtonSolver< SIZE, CELLTYPE >
CardiacSimulationArchiver< PROBLEM_CLASS >
CellAgesWriter< ELEMENT_DIM, SPACE_DIM >
CellAncestorWriter< ELEMENT_DIM, SPACE_DIM >
CellBasedPdeHandlerOnCuboid< DIM >
CellBasedSimulationArchiver< ELEMENT_DIM, SIM, SPACE_DIM >
CellBetaCateninWriter< ELEMENT_DIM, SPACE_DIM >
CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >
CellCycleModelOdeSolver< CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver >
CellCycleModelProteinConcentrationsWriter< ELEMENT_DIM, SPACE_DIM >
CellIdWriter< ELEMENT_DIM, SPACE_DIM >
CellLabelWriter< ELEMENT_DIM, SPACE_DIM >
CellLocationIndexWriter< ELEMENT_DIM, SPACE_DIM >
CellMLToSharedLibraryConverter
CellMutationStatesCountWriter< ELEMENT_DIM, SPACE_DIM >
CellMutationStatesWriter< ELEMENT_DIM, SPACE_DIM >
CellPopulationAreaWriter< ELEMENT_DIM, SPACE_DIM >
CellPopulationElementWriter< ELEMENT_DIM, SPACE_DIM >
CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >
CellProliferativePhasesWriter< ELEMENT_DIM, SPACE_DIM >
CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >
CellProliferativeTypesWriter< ELEMENT_DIM, SPACE_DIM >
CellRadiusWriter< ELEMENT_DIM, SPACE_DIM >
CellsGenerator< CELL_CYCLE_MODEL, DIM >
CellVolumesWriter< ELEMENT_DIM, SPACE_DIM >
CellwiseOdeSystemInformation< ODE_SYSTEM >
ChemotaxisPottsUpdateRule< DIM >
CmguiDeformedSolutionsWriter< DIM >
CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >
CML_noble_varghese_kohl_noble_1998_basic_with_sac
CombinedOdeSystem::VariableParameterMap
CombinedOdeSystemInformation::InstancePointers
CompressibleExponentialLaw< DIM >
CompressibleMooneyRivlinMaterialLaw< DIM >
CompressibleNonlinearElasticitySolver< DIM >
ConstBoundaryCondition< SPACE_DIM >
ContactInhibitionCellCycleModel
ContinuumMechanicsNeumannBcsAssembler< DIM >
ContinuumMechanicsProblemDefinition< DIM >
ContractionModelInputParameters_
CreateElectricsProblem< DIM, PROBLEM_DIM >
CreateElectricsProblem< DIM, 1u >
CreateElectricsProblem< DIM, 2u >
CryptCellsGenerator< CELL_CYCLE_MODEL >
CryptSimulationBoundaryCondition< DIM >
CuboidMeshConstructor< ELEMENT_DIM, SPACE_DIM >
CylindricalHoneycombMeshGenerator
CylindricalHoneycombVertexMeshGenerator
DeltaNotchTrackingModifier< DIM >
DiagonalVertexBasedDivisionRule< SPACE_DIM >
DifferentialAdhesionPottsUpdateRule< DIM >
DifferentiatedCellProliferativeType
DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >
DistributedBoxCollection< DIM >
DistributedQuadraticMesh< DIM >
DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
DistributedTetrahedralMeshPartitionType
ElectrodesStimulusFactory< DIM >
ElectroMechanicsProblemDefinition< DIM >
Element< ELEMENT_DIM, SPACE_DIM >
ExplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >
ExponentiallyDistributedStochasticDurationGenerationBasedCellCycleModel
ExtendedBidomainAssembler< ELEMENT_DIM, SPACE_DIM >
ExtendedBidomainMassMatrixAssembler< DIM >
ExtendedBidomainNeumannSurfaceTermAssembler< ELEMENT_DIM, SPACE_DIM >
ExtendedBidomainProblem< DIM >
ExtendedBidomainSolver< ELEM_DIM, SPACE_DIM >
ExtendedBidomainTissue< SPACE_DIM >
FemlabMeshReader< ELEMENT_DIM, SPACE_DIM >
FixedDurationGenerationBasedCellCycleModel
FourthOrderTensor< DIM1, DIM2, DIM3, DIM4 >
FunctionalBoundaryCondition< SPACE_DIM >
GammaDistributedStochasticDurationCellCycleModel
GaussianQuadratureRule< ELEMENT_DIM >
GeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >
GeneralPlaneStimulusCellFactory< CELL, ELEMENT_DIM, SPACE_DIM >
GenericEventHandler< NUM_EVENTS, CONCRETE >
GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
Hdf5ToCmguiConverter< ELEMENT_DIM, SPACE_DIM >
Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM >
Hdf5ToTxtConverter< ELEMENT_DIM, SPACE_DIM >
Hdf5ToVtkConverter< ELEMENT_DIM, SPACE_DIM >
Hdf5ToXdmfConverter< ELEMENT_DIM, SPACE_DIM >
HeartConfigRelatedCellFactory< SPACE_DIM >
HeartGeometryInformation< SPACE_DIM >
HeterotypicBoundaryLengthWriter< ELEMENT_DIM, SPACE_DIM >
ImplicitCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >
IncompressibleNonlinearElasticitySolver< DIM >
IsolatedLabelledCellKiller< DIM >
LabelBasedContractionCellFactory< DIM >
LinearBasisFunction< ELEMENT_DIM >
LinearParabolicPdeSystemWithCoupledOdeSystemSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
LinearSpringWithVariableSpringConstantsForce< DIM >
MassMatrixAssembler< ELEMENT_DIM, SPACE_DIM >
MemfemMeshReader< ELEMENT_DIM, SPACE_DIM >
MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >
MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::SpringIterator
MeshBasedCellPopulationWithGhostNodes< DIM >
MeshPottsWriterIterators< SPACE_DIM >
MeshWriterIterators< ELEMENT_DIM, SPACE_DIM >
MixedDimensionMesh< ELEMENT_DIM, SPACE_DIM >
MonodomainAssembler< ELEMENT_DIM, SPACE_DIM >
MonodomainCorrectionTermAssembler< ELEM_DIM, SPACE_DIM >
MonodomainProblem< ELEMENT_DIM, SPACE_DIM >
MonodomainSolver< ELEMENT_DIM, SPACE_DIM >
MonodomainStiffnessMatrixAssembler< ELEMENT_DIM, SPACE_DIM >
MonodomainTissue< ELEMENT_DIM, SPACE_DIM >
MooneyRivlinMaterialLaw< DIM >
MutableElement< ELEMENT_DIM, SPACE_DIM >
MutableElement< 1, SPACE_DIM >
MutableMesh< ELEMENT_DIM, SPACE_DIM >
MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
NagaiHondaDifferentialAdhesionForce< DIM >
NaturalNeumannSurfaceTermAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
Node< SPACE_DIM >::ContainingBoundaryElementIterator
Node< SPACE_DIM >::ContainingElementIterator
NodeBasedCellPopulation< DIM >
NodeBasedCellPopulationWithBuskeUpdate< DIM >
NodeBasedCellPopulationWithParticles< DIM >
NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >
NodePartitioner< ELEMENT_DIM, SPACE_DIM >
NodeVelocityWriter< ELEMENT_DIM, SPACE_DIM >
NonCachedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
NonlinearElasticityTools< DIM >
NonPhysiologicalContractionModel
OdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
OdePdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
OdeSystemForCoupledHeatEquation
OdeSystemForCoupledHeatEquationWithSource
OdeSystemInformation< ODE_SYSTEM >
OffLatticeSimulation< ELEMENT_DIM, SPACE_DIM >
OperatorSplittingMonodomainSolver< ELEMENT_DIM, SPACE_DIM >
OrthotropicConductivityTensors< ELEMENT_DIM, SPACE_DIM >
ParallelCellsGenerator< CELL_CYCLE_MODEL, DIM >
PCBlockDiagonal::PCBlockDiagonalContext
PCLDUFactorisation::PCLDUFactorisationContext
PCTwoLevelsBlockDiagonal::PCTwoLevelsBlockDiagonalContext
PdeAndBoundaryConditions< DIM >
PdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
PlaneStimulusCellFactory< CELL, ELEMENT_DIM, SPACE_DIM >
PostProcessingWriter< ELEMENT_DIM, SPACE_DIM >
PottsBasedCellPopulation< DIM >
PottsMesh< DIM >::PottsElementIterator
ProcessSpecificArchive< Archive >
PropagationPropertiesCalculator
PseudoEcgCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
PurkinjeVentricularJunctionStimulus
QuadraticBasisFunction< ELEMENT_DIM >
RampedQuarterStimulusCellFactory< CELL, DIM >
RandomDirectionVertexBasedDivisionRule< SPACE_DIM >
RungeKuttaFehlbergIvpOdeSolver
SerializableSingleton< SINGLETON_CLASS >
ShortAxisVertexBasedDivisionRule< SPACE_DIM >
SimpleLinearEllipticSolver< ELEMENT_DIM, SPACE_DIM >
SimpleLinearParabolicSolver< ELEMENT_DIM, SPACE_DIM >
SimpleNonlinearEllipticSolver< ELEMENT_DIM, SPACE_DIM >
SimpleOxygenBasedCellCycleModel
SimpleTargetAreaModifier< DIM >
SolidMechanicsProblemDefinition< DIM >
SpaceConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
SphereGeometryBoundaryCondition< DIM >
SteadyStateRestitutionStimulus
StiffnessMatrixAssembler< ELEMENT_DIM, SPACE_DIM >
StimulusBoundaryCondition< SPACE_DIM >
StochasticDurationCellCycleModel
StochasticDurationGenerationBasedCellCycleModel
StochasticOxygenBasedCellCycleModel
StokesFlowPreconditionerAssembler< DIM >
StokesFlowProblemDefinition< DIM >
StreeterFibreGenerator< SPACE_DIM >
SurfaceAreaConstraintPottsUpdateRule< DIM >
TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator
ToroidalHoneycombVertexMeshGenerator
TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
TrianglesMeshWriter< ELEMENT_DIM, SPACE_DIM >
VanLeeuwen2009WntSwatCellCycleModelHypothesisOne
VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo
VanLeeuwen2009WntSwatCellCycleOdeSystem
VertexBasedCellPopulation< DIM >
VertexCryptBoundaryForce< DIM >
VertexElement< ELEMENT_DIM, SPACE_DIM >
VertexMesh< ELEMENT_DIM, SPACE_DIM >
VertexMesh< ELEMENT_DIM, SPACE_DIM >::VertexElementIterator
VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >
VertexT1SwapLocationsWriter< ELEMENT_DIM, SPACE_DIM >
VertexT2SwapLocationsWriter< ELEMENT_DIM, SPACE_DIM >
VertexT3SwapLocationsWriter< ELEMENT_DIM, SPACE_DIM >
VoltageInterpolaterOntoMechanicsMesh< DIM >
VolumeConstraintPottsUpdateRule< DIM >
VolumeDependentAveragedSourcePde< DIM >
VoronoiDataWriter< ELEMENT_DIM, SPACE_DIM >
VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >
VtkNonlinearElasticitySolutionWriter< DIM >
XdmfMeshWriter< ELEMENT_DIM, SPACE_DIM >
AbstractBoundaryCondition< SPACE_DIM >
AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM >
AbstractCardiacCellFactory< 2 >
AbstractCardiacCellFactory< DIM >
AbstractCardiacCellFactory< SPACE_DIM >
AbstractCardiacMechanicsSolverInterface< DIM >
AbstractCellCycleModelOdeSolver
CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >
CellCycleModelOdeSolver< CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver >
AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::Iterator
AbstractChasteRegion< SPACE_DIM >
AbstractConductivityModifier< ELEMENT_DIM, SPACE_DIM >
AbstractConductivityModifier< DIM, DIM >
AbstractConductivityModifier< ELEMENT_DIM, ELEMENT_DIM >
AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM >
AbstractConductivityTensors< ELEMENT_DIM, ELEMENT_DIM >
AbstractContinuumMechanicsSolver< DIM >
AbstractContractionCellFactory< DIM >
AbstractDynamicallyLoadableEntity
AbstractElement< ELEMENT_DIM, SPACE_DIM >
AbstractElement< 0, SPACE_DIM >
AbstractElement< 1, SPACE_DIM >
AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >
Hdf5ToCmguiConverter< ELEMENT_DIM, SPACE_DIM >
Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM >
Hdf5ToTxtConverter< ELEMENT_DIM, SPACE_DIM >
AbstractLinearEllipticPde< ELEMENT_DIM, SPACE_DIM >
AbstractLinearEllipticPde< DIM, DIM >
AbstractLinearParabolicPde< ELEMENT_DIM, SPACE_DIM >
AbstractLinearParabolicPdeSystemForCoupledOdeSystem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
AbstractCompressibleMaterialLaw< DIM >
AbstractMesh< ELEMENT_DIM, SPACE_DIM >::NodeIterator
AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
AbstractMeshReader< SPACE_DIM, SPACE_DIM >
AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
AbstractMeshWriter< SPACE_DIM, SPACE_DIM >
AbstractNonlinearEllipticPde< SPACE_DIM >
AbstractPerElementWriter< ELEMENT_DIM, SPACE_DIM, DATA_SIZE >
AbstractPerElementWriter< DIM, DIM, DIM *DIM >
AbstractPerElementWriter< SPACE_DIM, SPACE_DIM, SPACE_DIM *SPACE_DIM >
AbstractStimulusFactory< ELEMENT_DIM, SPACE_DIM >
AbstractStimulusFactory< DIM >
AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ElementIterator
AbstractTimeAdaptivityController
AbstractUntemplatedConvergenceTester
AbstractUntemplatedParameterisedSystem
AbstractParameterisedSystem< VECTOR >
AbstractParameterisedSystem< N_Vector >
ArchiveOpener< Archive, Stream >
AbstractBoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
AbstractCardiacTissue< SPACE_DIM >
AbstractOdeBasedCellCycleModel
AbstractWntOdeBasedCellCycleModel
AbstractFeAssemblerInterface< CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >
AbstractContinuumMechanicsAssembler< DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >
AbstractContinuumMechanicsAssembler< DIM, true, true >
AbstractCardiacFeVolumeIntegralAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM, true, false, CARDIAC >
AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
AbstractCardiacFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, 1, false, true, CARDIAC >
AbstractCardiacFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, 1, false, true, NORMAL >
AbstractCardiacFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, 2, false, true, CARDIAC >
AbstractCardiacFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, 3, true, true, NORMAL >
AbstractFeVolumeIntegralAssembler< DIM, DIM, 2, false, true, CARDIAC >
AbstractFeVolumeIntegralAssembler< DIM, DIM, 3, false, true, NORMAL >
AbstractFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, 1, false, true, NORMAL >
AbstractAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, INTERPOLATION_LEVEL >
AbstractAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, 1, NORMAL >
AbstractAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NORMAL >
AbstractFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, true, true, NONLINEAR >
AbstractFeAssemblerCommon< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, true, false, NORMAL >
AbstractFeAssemblerInterface< true, false >
AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 1 >
MonodomainSolver< ELEMENT_DIM, SPACE_DIM >
AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 >
AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 >
AbstractStaticLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
AbstractMesh< ELEMENT_DIM, SPACE_DIM >
AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
DistributedTetrahedralMesh< DIM, DIM >
AbstractTetrahedralMesh< DIM, DIM >
AbstractTetrahedralMesh< ELEMENT_DIM, ELEMENT_DIM >
AbstractTetrahedralMesh< SPACE_DIM, SPACE_DIM >
AbstractMesh< ELEMENT_DIM, ELEMENT_DIM >
AbstractUntemplatedCardiacProblem
AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
AbstractCardiacProblem< DIM, DIM, 1 >
AbstractCardiacProblem< DIM, DIM, 2 >
CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >
CellCycleModelOdeSolver< CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver >
SerializableSingleton< SINGLETON_CLASS >
SerializableSingleton< RandomNumberGenerator >
boost::random::detail::normal_table< RealType >
boost::random::detail::unit_normal_distribution< RealType >
boost::random::normal_distribution_v156< RealType >
boost::random::normal_distribution_v156< RealType >::param_type
boost::serialization::version< AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > >
boost::serialization::version< AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM > >
boost::serialization::version< AbstractChasteRegion< SPACE_DIM > >
boost::serialization::version< AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > >
CardiacNewtonSolver< SIZE, CELLTYPE >
CardiacSimulationArchiver< PROBLEM_CLASS >
CellBasedSimulationArchiver< ELEMENT_DIM, SIM, SPACE_DIM >
CellMLToSharedLibraryConverter
CellsGenerator< CELL_CYCLE_MODEL, DIM >
CellsGenerator< CELL_CYCLE_MODEL, 2 >
CombinedOdeSystem::VariableParameterMap
CombinedOdeSystemInformation::InstancePointers
ContinuumMechanicsProblemDefinition< DIM >
ContractionModelInputParameters_
CreateElectricsProblem< DIM, PROBLEM_DIM >
CreateElectricsProblem< DIM, 1u >
CreateElectricsProblem< DIM, 2u >
CuboidMeshConstructor< ELEMENT_DIM, SPACE_DIM >
DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >
DistributedBoxCollection< DIM >
DistributedBoxCollection< SPACE_DIM >
DistributedTetrahedralMeshPartitionType
FourthOrderTensor< DIM1, DIM2, DIM3, DIM4 >
GaussianQuadratureRule< ELEMENT_DIM >
GaussianQuadratureRule< ELEMENT_DIM-1 >
GenericEventHandler< NUM_EVENTS, CONCRETE >
GenericEventHandler< 1, EventHandler >
GenericEventHandler< 11, CellBasedEventHandler >
GenericEventHandler< 11, MeshEventHandler >
GenericEventHandler< 16, HeartEventHandler >
GenericEventHandler< 7, MechanicsEventHandler >
HeartGeometryInformation< SPACE_DIM >
HeartGeometryInformation< ELEMENT_DIM >
AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
AbstractCellBasedSimulation< DIM >
AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
AbstractCellBasedSimulationModifier< ELEMENT_DIM, SPACE_DIM >
AbstractCellBasedSimulationModifier< DIM, DIM >
AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >
CellMutationStatesCountWriter< ELEMENT_DIM, SPACE_DIM >
CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >
AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >
BoundaryNodeWriter< ELEMENT_DIM, SPACE_DIM >
CellPopulationAreaWriter< ELEMENT_DIM, SPACE_DIM >
CellPopulationElementWriter< ELEMENT_DIM, SPACE_DIM >
HeterotypicBoundaryLengthWriter< ELEMENT_DIM, SPACE_DIM >
NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >
NodeVelocityWriter< ELEMENT_DIM, SPACE_DIM >
VertexT1SwapLocationsWriter< ELEMENT_DIM, SPACE_DIM >
VertexT2SwapLocationsWriter< ELEMENT_DIM, SPACE_DIM >
AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >
CellAgesWriter< ELEMENT_DIM, SPACE_DIM >
CellAncestorWriter< ELEMENT_DIM, SPACE_DIM >
CellBetaCateninWriter< ELEMENT_DIM, SPACE_DIM >
CellCycleModelProteinConcentrationsWriter< ELEMENT_DIM, SPACE_DIM >
CellIdWriter< ELEMENT_DIM, SPACE_DIM >
CellLabelWriter< ELEMENT_DIM, SPACE_DIM >
CellLocationIndexWriter< ELEMENT_DIM, SPACE_DIM >
CellMutationStatesWriter< ELEMENT_DIM, SPACE_DIM >
CellProliferativePhasesWriter< ELEMENT_DIM, SPACE_DIM >
CellProliferativeTypesWriter< ELEMENT_DIM, SPACE_DIM >
AbstractCellKiller< SPACE_DIM >
AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
AbstractCentreBasedCellPopulation< ELEMENT_DIM, ELEMENT_DIM >
AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM >
AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM >
AbstractCellPopulation< SPACE_DIM >
AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >
AbstractCellPopulationBoundaryCondition< DIM >
AbstractForce< ELEMENT_DIM, SPACE_DIM >
AbstractForce< ELEMENT_DIM, ELEMENT_DIM >
AbstractPottsUpdateRule< DIM >
AdhesionPottsUpdateRule< DIM >
ChemotaxisPottsUpdateRule< DIM >
AbstractVertexBasedDivisionRule< SPACE_DIM >
LinearBasisFunction< ELEMENT_DIM >
MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::SpringIterator
MeshPottsWriterIterators< SPACE_DIM >
MeshWriterIterators< ELEMENT_DIM, SPACE_DIM >
Node< SPACE_DIM >::ContainingBoundaryElementIterator
Node< SPACE_DIM >::ContainingElementIterator
NodePartitioner< ELEMENT_DIM, SPACE_DIM >
NonlinearElasticityTools< DIM >
ParallelCellsGenerator< CELL_CYCLE_MODEL, DIM >
PCBlockDiagonal::PCBlockDiagonalContext
PCLDUFactorisation::PCLDUFactorisationContext
PCTwoLevelsBlockDiagonal::PCTwoLevelsBlockDiagonalContext
PdeAndBoundaryConditions< DIM >
PostProcessingWriter< ELEMENT_DIM, SPACE_DIM >
PottsMesh< DIM >::PottsElementIterator
ProcessSpecificArchive< Archive >
PropagationPropertiesCalculator
QuadraticBasisFunction< ELEMENT_DIM >
TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator
VertexMesh< ELEMENT_DIM, SPACE_DIM >::VertexElementIterator
VoltageInterpolaterOntoMechanicsMesh< DIM >
VtkNonlinearElasticitySolutionWriter< DIM >
NaturalNeumannSurfaceTermAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
NaturalNeumannSurfaceTermAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > *
vector< AbstractChasteRegion< ELEMENT_DIM > * >
vector< boost::shared_ptr< AbstractCellBasedSimulationModifier< ELEMENT_DIM, ELEMENT_DIM > > >
vector< boost::shared_ptr< AbstractCellKiller< ELEMENT_DIM > > >
vector< boost::shared_ptr< AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, ELEMENT_DIM > > >
vector< boost::shared_ptr< AbstractCellPopulationCountWriter< ELEMENT_DIM, ELEMENT_DIM > > >
vector< boost::shared_ptr< AbstractCellPopulationWriter< ELEMENT_DIM, ELEMENT_DIM > > >
vector< boost::shared_ptr< AbstractCellWriter< ELEMENT_DIM, ELEMENT_DIM > > >
vector< boost::shared_ptr< AbstractForce< ELEMENT_DIM, ELEMENT_DIM > > >
cell_based/src/common/OdeLinearSystemSolver.cpp
cell_based/src/common/OdeLinearSystemSolver.hpp
cell_based/src/common/SimulationTime.cpp
cell_based/src/common/SimulationTime.hpp
cell_based/src/fortests/AbstractCellBasedTestSuite.hpp
cell_based/src/fortests/AbstractCellBasedWithTimingsTestSuite.hpp
cell_based/src/fortests/CheckReadyToDivideAndPhaseIsUpdated.hpp
cell_based/src/mesh/Cylindrical2dMesh.cpp
cell_based/src/mesh/Cylindrical2dMesh.hpp
cell_based/src/mesh/Cylindrical2dNodesOnlyMesh.cpp
cell_based/src/mesh/Cylindrical2dNodesOnlyMesh.hpp
cell_based/src/mesh/CylindricalHoneycombMeshGenerator.cpp
cell_based/src/mesh/CylindricalHoneycombMeshGenerator.hpp
cell_based/src/mesh/HoneycombMeshGenerator.cpp
cell_based/src/mesh/HoneycombMeshGenerator.hpp
cell_based/src/mesh/PottsElement.cpp
cell_based/src/mesh/PottsElement.hpp
cell_based/src/mesh/PottsMesh.cpp
cell_based/src/mesh/PottsMesh.hpp
cell_based/src/mesh/PottsMeshGenerator.cpp
cell_based/src/mesh/PottsMeshGenerator.hpp
cell_based/src/mesh/PottsMeshReader.cpp
cell_based/src/mesh/PottsMeshReader.hpp
cell_based/src/mesh/PottsMeshWriter.cpp
cell_based/src/mesh/PottsMeshWriter.hpp
cell_based/src/odes/Alarcon2004OxygenBasedCellCycleOdeSystem.cpp
cell_based/src/odes/Alarcon2004OxygenBasedCellCycleOdeSystem.hpp
cell_based/src/odes/CellwiseOdeSystemInformation.hpp
cell_based/src/odes/DeltaNotchOdeSystem.cpp
cell_based/src/odes/DeltaNotchOdeSystem.hpp
cell_based/src/odes/TysonNovak2001OdeSystem.cpp
cell_based/src/odes/TysonNovak2001OdeSystem.hpp
cell_based/src/population/AbstractCellPopulation.cpp
cell_based/src/population/AbstractCellPopulation.hpp
cell_based/src/population/AbstractCentreBasedCellPopulation.cpp
cell_based/src/population/AbstractCentreBasedCellPopulation.hpp
cell_based/src/population/AbstractOffLatticeCellPopulation.cpp
cell_based/src/population/AbstractOffLatticeCellPopulation.hpp
cell_based/src/population/AbstractOnLatticeCellPopulation.cpp
cell_based/src/population/AbstractOnLatticeCellPopulation.hpp
cell_based/src/population/CaBasedCellPopulation.cpp
cell_based/src/population/CaBasedCellPopulation.hpp
cell_based/src/population/CellwiseDataGradient.cpp
cell_based/src/population/CellwiseDataGradient.hpp
cell_based/src/population/MeshBasedCellPopulation.cpp
cell_based/src/population/MeshBasedCellPopulation.hpp
cell_based/src/population/MeshBasedCellPopulationWithGhostNodes.cpp
cell_based/src/population/MeshBasedCellPopulationWithGhostNodes.hpp
cell_based/src/population/NodeBasedCellPopulation.cpp
cell_based/src/population/NodeBasedCellPopulation.hpp
cell_based/src/population/NodeBasedCellPopulationWithBuskeUpdate.cpp
cell_based/src/population/NodeBasedCellPopulationWithBuskeUpdate.hpp
cell_based/src/population/NodeBasedCellPopulationWithParticles.cpp
cell_based/src/population/NodeBasedCellPopulationWithParticles.hpp
cell_based/src/population/PottsBasedCellPopulation.cpp
cell_based/src/population/PottsBasedCellPopulation.hpp
cell_based/src/population/VertexBasedCellPopulation.cpp
cell_based/src/population/VertexBasedCellPopulation.hpp
cell_based/src/population/boundary_conditions/AbstractCellPopulationBoundaryCondition.cpp
cell_based/src/population/boundary_conditions/AbstractCellPopulationBoundaryCondition.hpp
cell_based/src/population/boundary_conditions/PlaneBoundaryCondition.cpp
cell_based/src/population/boundary_conditions/PlaneBoundaryCondition.hpp
cell_based/src/population/boundary_conditions/SphereGeometryBoundaryCondition.cpp
cell_based/src/population/boundary_conditions/SphereGeometryBoundaryCondition.hpp
cell_based/src/population/cell/Cell.cpp
cell_based/src/population/cell/Cell.hpp
cell_based/src/population/cell/CellsGenerator.hpp
cell_based/src/population/cell/ParallelCellsGenerator.hpp
cell_based/src/population/cell/cycle/AbstractCellCycleModel.cpp
cell_based/src/population/cell/cycle/AbstractCellCycleModel.hpp
cell_based/src/population/cell/cycle/AbstractCellCycleModelOdeSolver.cpp
cell_based/src/population/cell/cycle/AbstractCellCycleModelOdeSolver.hpp
cell_based/src/population/cell/cycle/AbstractOdeBasedCellCycleModel.cpp
cell_based/src/population/cell/cycle/AbstractOdeBasedCellCycleModel.hpp
cell_based/src/population/cell/cycle/AbstractSimpleCellCycleModel.cpp
cell_based/src/population/cell/cycle/AbstractSimpleCellCycleModel.hpp
cell_based/src/population/cell/cycle/AbstractSimpleGenerationBasedCellCycleModel.cpp
cell_based/src/population/cell/cycle/AbstractSimpleGenerationBasedCellCycleModel.hpp
cell_based/src/population/cell/cycle/Alarcon2004OxygenBasedCellCycleModel.cpp
cell_based/src/population/cell/cycle/Alarcon2004OxygenBasedCellCycleModel.hpp
cell_based/src/population/cell/cycle/CellCycleModelOdeHandler.cpp
cell_based/src/population/cell/cycle/CellCycleModelOdeHandler.hpp
cell_based/src/population/cell/cycle/CellCycleModelOdeSolver.hpp
cell_based/src/population/cell/cycle/CellCycleModelOdeSolverExportWrapper.hpp
cell_based/src/population/cell/cycle/CellCyclePhases.hpp
cell_based/src/population/cell/cycle/ContactInhibitionCellCycleModel.cpp
cell_based/src/population/cell/cycle/ContactInhibitionCellCycleModel.hpp
cell_based/src/population/cell/cycle/DeltaNotchCellCycleModel.cpp
cell_based/src/population/cell/cycle/DeltaNotchCellCycleModel.hpp
cell_based/src/population/cell/cycle/ExponentiallyDistributedStochasticDurationGenerationBasedCellCycleModel.cpp
cell_based/src/population/cell/cycle/ExponentiallyDistributedStochasticDurationGenerationBasedCellCycleModel.hpp
cell_based/src/population/cell/cycle/FixedDurationGenerationBasedCellCycleModel.cpp
cell_based/src/population/cell/cycle/FixedDurationGenerationBasedCellCycleModel.hpp
cell_based/src/population/cell/cycle/GammaDistributedStochasticDurationCellCycleModel.cpp
cell_based/src/population/cell/cycle/GammaDistributedStochasticDurationCellCycleModel.hpp
cell_based/src/population/cell/cycle/SimpleOxygenBasedCellCycleModel.cpp
cell_based/src/population/cell/cycle/SimpleOxygenBasedCellCycleModel.hpp
cell_based/src/population/cell/cycle/StochasticDurationCellCycleModel.cpp
cell_based/src/population/cell/cycle/StochasticDurationCellCycleModel.hpp
cell_based/src/population/cell/cycle/StochasticDurationGenerationBasedCellCycleModel.cpp
cell_based/src/population/cell/cycle/StochasticDurationGenerationBasedCellCycleModel.hpp
cell_based/src/population/cell/cycle/StochasticOxygenBasedCellCycleModel.cpp
cell_based/src/population/cell/cycle/StochasticOxygenBasedCellCycleModel.hpp
cell_based/src/population/cell/cycle/TysonNovakCellCycleModel.cpp
cell_based/src/population/cell/cycle/TysonNovakCellCycleModel.hpp
cell_based/src/population/cell/properties/AbstractCellProperty.cpp
cell_based/src/population/cell/properties/AbstractCellProperty.hpp
cell_based/src/population/cell/properties/ApoptoticCellProperty.cpp
cell_based/src/population/cell/properties/ApoptoticCellProperty.hpp
cell_based/src/population/cell/properties/CellAncestor.cpp
cell_based/src/population/cell/properties/CellAncestor.hpp
cell_based/src/population/cell/properties/CellData.cpp
cell_based/src/population/cell/properties/CellData.hpp
cell_based/src/population/cell/properties/CellId.cpp
cell_based/src/population/cell/properties/CellId.hpp
cell_based/src/population/cell/properties/CellLabel.cpp
cell_based/src/population/cell/properties/CellLabel.hpp
cell_based/src/population/cell/properties/CellPropertyCollection.cpp
cell_based/src/population/cell/properties/CellPropertyCollection.hpp
cell_based/src/population/cell/properties/CellPropertyRegistry.cpp
cell_based/src/population/cell/properties/CellPropertyRegistry.hpp
cell_based/src/population/cell/properties/mutations/AbstractCellMutationState.cpp
cell_based/src/population/cell/properties/mutations/AbstractCellMutationState.hpp
cell_based/src/population/cell/properties/mutations/ApcOneHitCellMutationState.cpp
cell_based/src/population/cell/properties/mutations/ApcOneHitCellMutationState.hpp
cell_based/src/population/cell/properties/mutations/ApcTwoHitCellMutationState.cpp
cell_based/src/population/cell/properties/mutations/ApcTwoHitCellMutationState.hpp
cell_based/src/population/cell/properties/mutations/BetaCateninOneHitCellMutationState.cpp
cell_based/src/population/cell/properties/mutations/BetaCateninOneHitCellMutationState.hpp
cell_based/src/population/cell/properties/mutations/WildTypeCellMutationState.cpp
cell_based/src/population/cell/properties/mutations/WildTypeCellMutationState.hpp
cell_based/src/population/cell/properties/proliferative_types/AbstractCellProliferativeType.cpp
cell_based/src/population/cell/properties/proliferative_types/AbstractCellProliferativeType.hpp
cell_based/src/population/cell/properties/proliferative_types/DefaultCellProliferativeType.cpp
cell_based/src/population/cell/properties/proliferative_types/DefaultCellProliferativeType.hpp
cell_based/src/population/cell/properties/proliferative_types/DifferentiatedCellProliferativeType.cpp
cell_based/src/population/cell/properties/proliferative_types/DifferentiatedCellProliferativeType.hpp
cell_based/src/population/cell/properties/proliferative_types/StemCellProliferativeType.cpp
cell_based/src/population/cell/properties/proliferative_types/StemCellProliferativeType.hpp
cell_based/src/population/cell/properties/proliferative_types/TransitCellProliferativeType.cpp
cell_based/src/population/cell/properties/proliferative_types/TransitCellProliferativeType.hpp
cell_based/src/population/division_rules/AbstractVertexBasedDivisionRule.cpp
cell_based/src/population/division_rules/AbstractVertexBasedDivisionRule.hpp
cell_based/src/population/division_rules/DiagonalVertexBasedDivisionRule.cpp
cell_based/src/population/division_rules/DiagonalVertexBasedDivisionRule.hpp
cell_based/src/population/division_rules/RandomDirectionVertexBasedDivisionRule.cpp
cell_based/src/population/division_rules/RandomDirectionVertexBasedDivisionRule.hpp
cell_based/src/population/division_rules/ShortAxisVertexBasedDivisionRule.cpp
cell_based/src/population/division_rules/ShortAxisVertexBasedDivisionRule.hpp
cell_based/src/population/killers/AbstractCellKiller.cpp
cell_based/src/population/killers/AbstractCellKiller.hpp
cell_based/src/population/killers/ApoptoticCellKiller.cpp
cell_based/src/population/killers/ApoptoticCellKiller.hpp
cell_based/src/population/killers/IsolatedLabelledCellKiller.cpp
cell_based/src/population/killers/IsolatedLabelledCellKiller.hpp
cell_based/src/population/killers/PlaneBasedCellKiller.cpp
cell_based/src/population/killers/PlaneBasedCellKiller.hpp
cell_based/src/population/killers/RandomCellKiller.cpp
cell_based/src/population/killers/RandomCellKiller.hpp
cell_based/src/population/killers/T2SwapCellKiller.cpp
cell_based/src/population/killers/T2SwapCellKiller.hpp
cell_based/src/population/killers/TargetedCellKiller.cpp
cell_based/src/population/killers/TargetedCellKiller.hpp
cell_based/src/population/mechanics/AbstractForce.cpp
cell_based/src/population/mechanics/AbstractForce.hpp
cell_based/src/population/mechanics/AbstractTwoBodyInteractionForce.cpp
cell_based/src/population/mechanics/AbstractTwoBodyInteractionForce.hpp
cell_based/src/population/mechanics/BuskeAdhesiveForce.cpp
cell_based/src/population/mechanics/BuskeAdhesiveForce.hpp
cell_based/src/population/mechanics/BuskeCompressionForce.cpp
cell_based/src/population/mechanics/BuskeCompressionForce.hpp
cell_based/src/population/mechanics/BuskeElasticForce.cpp
cell_based/src/population/mechanics/BuskeElasticForce.hpp
cell_based/src/population/mechanics/ChemotacticForce.cpp
cell_based/src/population/mechanics/ChemotacticForce.hpp
cell_based/src/population/mechanics/DiffusionForce.cpp
cell_based/src/population/mechanics/DiffusionForce.hpp
cell_based/src/population/mechanics/DiscreteSystemForceCalculator.cpp
cell_based/src/population/mechanics/DiscreteSystemForceCalculator.hpp
cell_based/src/population/mechanics/FarhadifarForce.cpp
cell_based/src/population/mechanics/FarhadifarForce.hpp
cell_based/src/population/mechanics/GeneralisedLinearSpringForce.cpp
cell_based/src/population/mechanics/GeneralisedLinearSpringForce.hpp
cell_based/src/population/mechanics/NagaiHondaDifferentialAdhesionForce.cpp
cell_based/src/population/mechanics/NagaiHondaDifferentialAdhesionForce.hpp
cell_based/src/population/mechanics/NagaiHondaForce.cpp
cell_based/src/population/mechanics/NagaiHondaForce.hpp
cell_based/src/population/mechanics/RepulsionForce.cpp
cell_based/src/population/mechanics/RepulsionForce.hpp
cell_based/src/population/mechanics/WelikyOsterForce.cpp
cell_based/src/population/mechanics/WelikyOsterForce.hpp
cell_based/src/population/pdes/AveragedSourcePde.cpp
cell_based/src/population/pdes/AveragedSourcePde.hpp
cell_based/src/population/pdes/CellBasedPdeHandler.cpp
cell_based/src/population/pdes/CellBasedPdeHandler.hpp
cell_based/src/population/pdes/CellBasedPdeHandlerOnCuboid.cpp
cell_based/src/population/pdes/CellBasedPdeHandlerOnCuboid.hpp
cell_based/src/population/pdes/CellBasedPdeSolver.cpp
cell_based/src/population/pdes/CellBasedPdeSolver.hpp
cell_based/src/population/pdes/CellwiseSourcePde.cpp
cell_based/src/population/pdes/CellwiseSourcePde.hpp
cell_based/src/population/pdes/PdeAndBoundaryConditions.cpp
cell_based/src/population/pdes/PdeAndBoundaryConditions.hpp
cell_based/src/population/pdes/SimpleUniformSourcePde.cpp
cell_based/src/population/pdes/SimpleUniformSourcePde.hpp
cell_based/src/population/pdes/VolumeDependentAveragedSourcePde.cpp
cell_based/src/population/pdes/VolumeDependentAveragedSourcePde.hpp
cell_based/src/population/update_rules/AbstractCaUpdateRule.cpp
cell_based/src/population/update_rules/AbstractCaUpdateRule.hpp
cell_based/src/population/update_rules/AbstractPottsUpdateRule.cpp
cell_based/src/population/update_rules/AbstractPottsUpdateRule.hpp
cell_based/src/population/update_rules/AdhesionPottsUpdateRule.cpp
cell_based/src/population/update_rules/AdhesionPottsUpdateRule.hpp
cell_based/src/population/update_rules/ChemotaxisPottsUpdateRule.cpp
cell_based/src/population/update_rules/ChemotaxisPottsUpdateRule.hpp
cell_based/src/population/update_rules/DifferentialAdhesionPottsUpdateRule.cpp
cell_based/src/population/update_rules/DifferentialAdhesionPottsUpdateRule.hpp
cell_based/src/population/update_rules/DiffusionCaUpdateRule.cpp
cell_based/src/population/update_rules/DiffusionCaUpdateRule.hpp
cell_based/src/population/update_rules/SurfaceAreaConstraintPottsUpdateRule.cpp
cell_based/src/population/update_rules/SurfaceAreaConstraintPottsUpdateRule.hpp
cell_based/src/population/update_rules/VolumeConstraintPottsUpdateRule.cpp
cell_based/src/population/update_rules/VolumeConstraintPottsUpdateRule.hpp
cell_based/src/population/writers/AbstractCellBasedWriter.cpp
cell_based/src/population/writers/AbstractCellBasedWriter.hpp
cell_based/src/population/writers/cell_writers/AbstractCellWriter.cpp
cell_based/src/population/writers/cell_writers/AbstractCellWriter.hpp
cell_based/src/population/writers/cell_writers/CellAgesWriter.cpp
cell_based/src/population/writers/cell_writers/CellAgesWriter.hpp
cell_based/src/population/writers/cell_writers/CellAncestorWriter.cpp
cell_based/src/population/writers/cell_writers/CellAncestorWriter.hpp
cell_based/src/population/writers/cell_writers/CellCycleModelProteinConcentrationsWriter.cpp
cell_based/src/population/writers/cell_writers/CellCycleModelProteinConcentrationsWriter.hpp
cell_based/src/population/writers/cell_writers/CellIdWriter.cpp
cell_based/src/population/writers/cell_writers/CellIdWriter.hpp
cell_based/src/population/writers/cell_writers/CellLabelWriter.cpp
cell_based/src/population/writers/cell_writers/CellLabelWriter.hpp
cell_based/src/population/writers/cell_writers/CellLocationIndexWriter.cpp
cell_based/src/population/writers/cell_writers/CellLocationIndexWriter.hpp
cell_based/src/population/writers/cell_writers/CellMutationStatesWriter.cpp
cell_based/src/population/writers/cell_writers/CellMutationStatesWriter.hpp
cell_based/src/population/writers/cell_writers/CellProliferativePhasesWriter.cpp
cell_based/src/population/writers/cell_writers/CellProliferativePhasesWriter.hpp
cell_based/src/population/writers/cell_writers/CellProliferativeTypesWriter.cpp
cell_based/src/population/writers/cell_writers/CellProliferativeTypesWriter.hpp
cell_based/src/population/writers/cell_writers/CellRadiusWriter.cpp
cell_based/src/population/writers/cell_writers/CellRadiusWriter.hpp
cell_based/src/population/writers/cell_writers/CellVolumesWriter.cpp
cell_based/src/population/writers/cell_writers/CellVolumesWriter.hpp
cell_based/src/population/writers/population_count_writers/AbstractCellPopulationCountWriter.cpp
cell_based/src/population/writers/population_count_writers/AbstractCellPopulationCountWriter.hpp
cell_based/src/population/writers/population_count_writers/CellMutationStatesCountWriter.cpp
cell_based/src/population/writers/population_count_writers/CellMutationStatesCountWriter.hpp
cell_based/src/population/writers/population_count_writers/CellProliferativePhasesCountWriter.cpp
cell_based/src/population/writers/population_count_writers/CellProliferativePhasesCountWriter.hpp
cell_based/src/population/writers/population_count_writers/CellProliferativeTypesCountWriter.cpp
cell_based/src/population/writers/population_count_writers/CellProliferativeTypesCountWriter.hpp
cell_based/src/population/writers/population_writers/AbstractCellPopulationWriter.cpp
cell_based/src/population/writers/population_writers/AbstractCellPopulationWriter.hpp
cell_based/src/population/writers/population_writers/BoundaryNodeWriter.cpp
cell_based/src/population/writers/population_writers/BoundaryNodeWriter.hpp
cell_based/src/population/writers/population_writers/CellPopulationAreaWriter.cpp
cell_based/src/population/writers/population_writers/CellPopulationAreaWriter.hpp
cell_based/src/population/writers/population_writers/CellPopulationElementWriter.cpp
cell_based/src/population/writers/population_writers/CellPopulationElementWriter.hpp
cell_based/src/population/writers/population_writers/HeterotypicBoundaryLengthWriter.cpp
cell_based/src/population/writers/population_writers/HeterotypicBoundaryLengthWriter.hpp
cell_based/src/population/writers/population_writers/NodeLocationWriter.cpp
cell_based/src/population/writers/population_writers/NodeLocationWriter.hpp
cell_based/src/population/writers/population_writers/NodeVelocityWriter.cpp
cell_based/src/population/writers/population_writers/NodeVelocityWriter.hpp
cell_based/src/population/writers/population_writers/VertexT1SwapLocationsWriter.cpp
cell_based/src/population/writers/population_writers/VertexT1SwapLocationsWriter.hpp
cell_based/src/population/writers/population_writers/VertexT2SwapLocationsWriter.cpp
cell_based/src/population/writers/population_writers/VertexT2SwapLocationsWriter.hpp
cell_based/src/population/writers/population_writers/VertexT3SwapLocationsWriter.cpp
cell_based/src/population/writers/population_writers/VertexT3SwapLocationsWriter.hpp
cell_based/src/population/writers/population_writers/VoronoiDataWriter.cpp
cell_based/src/population/writers/population_writers/VoronoiDataWriter.hpp
cell_based/src/simulation/AbstractCellBasedSimulation.cpp
cell_based/src/simulation/AbstractCellBasedSimulation.hpp
cell_based/src/simulation/CellBasedSimulationArchiver.hpp
cell_based/src/simulation/OffLatticeSimulation.cpp
cell_based/src/simulation/OffLatticeSimulation.hpp
cell_based/src/simulation/OnLatticeSimulation.cpp
cell_based/src/simulation/OnLatticeSimulation.hpp
cell_based/src/simulation/modifiers/AbstractCellBasedSimulationModifier.cpp
cell_based/src/simulation/modifiers/AbstractCellBasedSimulationModifier.hpp
cell_based/src/simulation/modifiers/AbstractTargetAreaModifier.cpp
cell_based/src/simulation/modifiers/AbstractTargetAreaModifier.hpp
cell_based/src/simulation/modifiers/DeltaNotchTrackingModifier.cpp
cell_based/src/simulation/modifiers/DeltaNotchTrackingModifier.hpp
cell_based/src/simulation/modifiers/FarhadifarTypeModifier.cpp
cell_based/src/simulation/modifiers/FarhadifarTypeModifier.hpp
cell_based/src/simulation/modifiers/SimpleTargetAreaModifier.cpp
cell_based/src/simulation/modifiers/SimpleTargetAreaModifier.hpp
cell_based/src/simulation/modifiers/VolumeTrackingModifier.cpp
cell_based/src/simulation/modifiers/VolumeTrackingModifier.hpp
continuum_mechanics/src/common/NonlinearElasticityTools.cpp
continuum_mechanics/src/common/NonlinearElasticityTools.hpp
continuum_mechanics/src/problem/CompressibilityType.hpp
continuum_mechanics/src/problem/ContinuumMechanicsProblemDefinition.cpp
continuum_mechanics/src/problem/ContinuumMechanicsProblemDefinition.hpp
continuum_mechanics/src/problem/SolidMechanicsProblemDefinition.cpp
continuum_mechanics/src/problem/SolidMechanicsProblemDefinition.hpp
continuum_mechanics/src/problem/StokesFlowProblemDefinition.hpp
continuum_mechanics/src/problem/material_laws/AbstractCompressibleMaterialLaw.hpp
continuum_mechanics/src/problem/material_laws/AbstractIncompressibleMaterialLaw.hpp
continuum_mechanics/src/problem/material_laws/AbstractIsotropicCompressibleMaterialLaw.cpp
continuum_mechanics/src/problem/material_laws/AbstractIsotropicCompressibleMaterialLaw.hpp
continuum_mechanics/src/problem/material_laws/AbstractIsotropicIncompressibleMaterialLaw.cpp
continuum_mechanics/src/problem/material_laws/AbstractIsotropicIncompressibleMaterialLaw.hpp
continuum_mechanics/src/problem/material_laws/AbstractMaterialLaw.cpp
continuum_mechanics/src/problem/material_laws/AbstractMaterialLaw.hpp
continuum_mechanics/src/problem/material_laws/CompressibleExponentialLaw.cpp
continuum_mechanics/src/problem/material_laws/CompressibleExponentialLaw.hpp
continuum_mechanics/src/problem/material_laws/CompressibleMooneyRivlinMaterialLaw.hpp
continuum_mechanics/src/problem/material_laws/ExponentialMaterialLaw.cpp
continuum_mechanics/src/problem/material_laws/ExponentialMaterialLaw.hpp
continuum_mechanics/src/problem/material_laws/MooneyRivlinMaterialLaw.cpp
continuum_mechanics/src/problem/material_laws/MooneyRivlinMaterialLaw.hpp
continuum_mechanics/src/problem/material_laws/NashHunterPoleZeroLaw.cpp
continuum_mechanics/src/problem/material_laws/NashHunterPoleZeroLaw.hpp
continuum_mechanics/src/problem/material_laws/PoleZeroMaterialLaw.cpp
continuum_mechanics/src/problem/material_laws/PoleZeroMaterialLaw.hpp
continuum_mechanics/src/problem/material_laws/PolynomialMaterialLaw3d.cpp
continuum_mechanics/src/problem/material_laws/PolynomialMaterialLaw3d.hpp
continuum_mechanics/src/problem/material_laws/SchmidCostaExponentialLaw2d.cpp
continuum_mechanics/src/problem/material_laws/SchmidCostaExponentialLaw2d.hpp
continuum_mechanics/src/solver/AbstractContinuumMechanicsAssembler.hpp
continuum_mechanics/src/solver/AbstractContinuumMechanicsSolver.hpp
continuum_mechanics/src/solver/AbstractNonlinearElasticitySolver.hpp
continuum_mechanics/src/solver/CompressibleNonlinearElasticitySolver.cpp
continuum_mechanics/src/solver/CompressibleNonlinearElasticitySolver.hpp
continuum_mechanics/src/solver/ContinuumMechanicsNeumannBcsAssembler.hpp
continuum_mechanics/src/solver/IncompressibleNonlinearElasticitySolver.cpp
continuum_mechanics/src/solver/IncompressibleNonlinearElasticitySolver.hpp
continuum_mechanics/src/solver/StokesFlowAssembler.hpp
continuum_mechanics/src/solver/StokesFlowPreconditionerAssembler.hpp
continuum_mechanics/src/solver/StokesFlowSolver.hpp
continuum_mechanics/src/solver/VtkNonlinearElasticitySolutionWriter.cpp
continuum_mechanics/src/solver/VtkNonlinearElasticitySolutionWriter.hpp
crypt/src/boundary_conditions/CryptSimulationBoundaryCondition.cpp
crypt/src/boundary_conditions/CryptSimulationBoundaryCondition.hpp
crypt/src/killers/RadialSloughingCellKiller.cpp
crypt/src/killers/RadialSloughingCellKiller.hpp
crypt/src/killers/SloughingCellKiller.cpp
crypt/src/killers/SloughingCellKiller.hpp
crypt/src/mechanics/CryptProjectionForce.cpp
crypt/src/mechanics/CryptProjectionForce.hpp
crypt/src/mechanics/LinearSpringWithVariableSpringConstantsForce.cpp
crypt/src/mechanics/LinearSpringWithVariableSpringConstantsForce.hpp
crypt/src/mechanics/VertexCryptBoundaryForce.cpp
crypt/src/mechanics/VertexCryptBoundaryForce.hpp
crypt/src/odes/Mirams2010WntOdeSystem.cpp
crypt/src/odes/Mirams2010WntOdeSystem.hpp
crypt/src/odes/VanLeeuwen2009WntSwatCellCycleOdeSystem.cpp
crypt/src/odes/VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp
crypt/src/odes/WntCellCycleOdeSystem.cpp
crypt/src/odes/WntCellCycleOdeSystem.hpp
crypt/src/population/cell/CryptCellsGenerator.hpp
crypt/src/population/cell/cycle/AbstractVanLeeuwen2009WntSwatCellCycleModel.cpp
crypt/src/population/cell/cycle/AbstractVanLeeuwen2009WntSwatCellCycleModel.hpp
crypt/src/population/cell/cycle/AbstractWntOdeBasedCellCycleModel.cpp
crypt/src/population/cell/cycle/AbstractWntOdeBasedCellCycleModel.hpp
crypt/src/population/cell/cycle/SimpleWntCellCycleModel.cpp
crypt/src/population/cell/cycle/SimpleWntCellCycleModel.hpp
crypt/src/population/cell/cycle/SingleOdeWntCellCycleModel.cpp
crypt/src/population/cell/cycle/SingleOdeWntCellCycleModel.hpp
crypt/src/population/cell/cycle/StochasticWntCellCycleModel.cpp
crypt/src/population/cell/cycle/StochasticWntCellCycleModel.hpp
crypt/src/population/cell/cycle/VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.cpp
crypt/src/population/cell/cycle/VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.hpp
crypt/src/population/cell/cycle/VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo.cpp
crypt/src/population/cell/cycle/VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo.hpp
crypt/src/population/cell/cycle/WntCellCycleModel.cpp
crypt/src/population/cell/cycle/WntCellCycleModel.hpp
crypt/src/population/cell/cycle/WntConcentration.cpp
crypt/src/population/cell/cycle/WntConcentration.hpp
crypt/src/population/writers/CellBetaCateninWriter.cpp
crypt/src/population/writers/CellBetaCateninWriter.hpp
crypt/src/simulation/CryptSimulation1d.cpp
crypt/src/simulation/CryptSimulation1d.hpp
crypt/src/simulation/CryptSimulation2d.cpp
crypt/src/simulation/CryptSimulation2d.hpp
crypt/src/statistics/AbstractCryptStatistics.cpp
crypt/src/statistics/AbstractCryptStatistics.hpp
crypt/src/statistics/CryptProjectionStatistics.cpp
crypt/src/statistics/CryptProjectionStatistics.hpp
crypt/src/statistics/CryptStatistics.cpp
crypt/src/statistics/CryptStatistics.hpp
global/src/Boost156NormalDistribution.hpp
global/src/BoostFilesystem.hpp
global/src/ChasteBuildRoot.hpp
global/src/Citations.cpp
global/src/Citations.hpp
global/src/CommandLineArguments.cpp
global/src/CommandLineArguments.hpp
global/src/Debug.cpp
global/src/DoxygenMainPage.hpp
global/src/Exception.cpp
global/src/ExecutableSupport.cpp
global/src/ExecutableSupport.hpp
global/src/FileFinder.cpp
global/src/FileFinder.hpp
global/src/GetCurrentWorkingDirectory.cpp
global/src/GetCurrentWorkingDirectory.hpp
global/src/LogFile.cpp
global/src/LogFile.hpp
global/src/MathsCustomFunctions.cpp
global/src/MathsCustomFunctions.hpp
global/src/ObjectCommunicator.hpp
global/src/OutputDirectoryFifoQueue.cpp
global/src/OutputDirectoryFifoQueue.hpp
global/src/OutputFileHandler.cpp
global/src/OutputFileHandler.hpp
global/src/PosixPathFixer.cpp
global/src/PosixPathFixer.hpp
global/src/ProgressReporter.cpp
global/src/ProgressReporter.hpp
global/src/RandomNumberGenerator.cpp
global/src/RandomNumberGenerator.hpp
global/src/TimeStepper.cpp
global/src/TimeStepper.hpp
global/src/VectorHelperFunctions.hpp
global/src/Version.hpp
global/src/Warnings.cpp
global/src/Warnings.hpp
global/src/checkpointing/ArchiveLocationInfo.cpp
global/src/checkpointing/ArchiveLocationInfo.hpp
global/src/checkpointing/ArchiveOpener.cpp
global/src/checkpointing/ArchiveOpener.hpp
global/src/checkpointing/ChasteSerialization.hpp
global/src/checkpointing/ChasteSerializationVersion.hpp
global/src/checkpointing/CheckpointArchiveTypes.hpp
global/src/checkpointing/CheckpointArchiveTypesIfNeeded.hpp
global/src/checkpointing/ClassIsAbstract.hpp
global/src/checkpointing/Identifiable.cpp
global/src/checkpointing/Identifiable.hpp
global/src/checkpointing/ProcessSpecificArchive.cpp
global/src/checkpointing/ProcessSpecificArchive.hpp
global/src/checkpointing/SerializableSingleton.hpp
global/src/checkpointing/SerializationExportWrapper.hpp
global/src/checkpointing/SerializationExportWrapperForCpp.hpp
global/src/fortests/AbstractFileComparison.hpp
global/src/fortests/CommandLineArgumentsMocker.cpp
global/src/fortests/CommandLineArgumentsMocker.hpp
global/src/fortests/FakePetscSetup.hpp
global/src/fortests/FileComparison.hpp
global/src/fortests/NumericFileComparison.hpp
global/src/fortests/PetscSetupAndFinalize.hpp
global/src/fortests/PetscSetupUtils.cpp
global/src/fortests/PetscSetupUtils.hpp
global/src/parallel/DistributedVector.cpp
global/src/parallel/DistributedVector.hpp
global/src/parallel/DistributedVectorException.cpp
global/src/parallel/DistributedVectorException.hpp
global/src/parallel/DistributedVectorFactory.cpp
global/src/parallel/DistributedVectorFactory.hpp
global/src/parallel/PetscException.cpp
global/src/parallel/PetscException.hpp
global/src/parallel/PetscTools.cpp
global/src/parallel/PetscTools.hpp
global/src/parallel/ReplicatableVector.cpp
global/src/parallel/ReplicatableVector.hpp
global/src/timing/CellBasedEventHandler.cpp
global/src/timing/CellBasedEventHandler.hpp
global/src/timing/GenericEventHandler.hpp
global/src/timing/HeartEventHandler.cpp
global/src/timing/HeartEventHandler.hpp
global/src/timing/MechanicsEventHandler.cpp
global/src/timing/MechanicsEventHandler.hpp
global/src/timing/Timer.cpp
global/src/timing/Timer.hpp
heart/src/convergence/AbstractConvergenceTester.cpp
heart/src/convergence/AbstractConvergenceTester.hpp
heart/src/convergence/OdeConvergenceTester.hpp
heart/src/convergence/OdePdeConvergenceTester.hpp
heart/src/convergence/PdeConvergenceTester.hpp
heart/src/convergence/SpaceConvergenceTester.hpp
heart/src/fortests/CheckMonoLr91Vars.hpp
heart/src/fortests/LuoRudySpiralWaveCellFactory.hpp
heart/src/fortests/RunAndCheckIonicModels.hpp
heart/src/fortests/SimpleBathProblemSetup.hpp
heart/src/io/FibreConverter.cpp
heart/src/io/FibreConverter.hpp
heart/src/io/FibreReader.cpp
heart/src/io/FibreReader.hpp
heart/src/io/FibreWriter.cpp
heart/src/io/FibreWriter.hpp
heart/src/io/HeartFileFinder.cpp
heart/src/io/HeartFileFinder.hpp
heart/src/io/XmlTools.cpp
heart/src/io/XmlTools.hpp
heart/src/odes/AbstractBackwardEulerCardiacCell.hpp
heart/src/odes/AbstractCardiacCell.cpp
heart/src/odes/AbstractCardiacCell.hpp
heart/src/odes/AbstractCardiacCellInterface.cpp
heart/src/odes/AbstractCardiacCellInterface.hpp
heart/src/odes/AbstractCardiacCellWithModifiers.cpp
heart/src/odes/AbstractCardiacCellWithModifiers.hpp
heart/src/odes/AbstractCvodeCell.cpp
heart/src/odes/AbstractCvodeCell.hpp
heart/src/odes/AbstractDynamicallyLoadableEntity.cpp
heart/src/odes/AbstractDynamicallyLoadableEntity.hpp
heart/src/odes/AbstractGeneralizedRushLarsenCardiacCell.cpp
heart/src/odes/AbstractGeneralizedRushLarsenCardiacCell.hpp
heart/src/odes/AbstractLookupTableCollection.cpp
heart/src/odes/AbstractLookupTableCollection.hpp
heart/src/odes/AbstractModifier.hpp
heart/src/odes/AbstractRushLarsenCardiacCell.cpp
heart/src/odes/AbstractRushLarsenCardiacCell.hpp
heart/src/odes/CardiacNewtonSolver.hpp
heart/src/odes/CellMLLoader.cpp
heart/src/odes/CellMLLoader.hpp
heart/src/odes/CellMLToSharedLibraryConverter.cpp
heart/src/odes/CellMLToSharedLibraryConverter.hpp
heart/src/odes/DynamicCellModelLoader.cpp
heart/src/odes/DynamicCellModelLoader.hpp
heart/src/odes/DynamicModelLoaderRegistry.cpp
heart/src/odes/DynamicModelLoaderRegistry.hpp
heart/src/odes/Modifiers.hpp
heart/src/odes/contractionmodels/AbstractAlgebraicContractionModel.hpp
heart/src/odes/contractionmodels/AbstractContractionModel.hpp
heart/src/odes/contractionmodels/AbstractOdeBasedContractionModel.hpp
heart/src/odes/contractionmodels/ConstantActiveTension.hpp
heart/src/odes/contractionmodels/ContractionModelName.hpp
heart/src/odes/contractionmodels/FakeBathContractionModel.cpp
heart/src/odes/contractionmodels/FakeBathContractionModel.hpp
heart/src/odes/contractionmodels/Kerchoffs2003ContractionModel.cpp
heart/src/odes/contractionmodels/Kerchoffs2003ContractionModel.hpp
heart/src/odes/contractionmodels/Nash2004ContractionModel.cpp
heart/src/odes/contractionmodels/Nash2004ContractionModel.hpp
heart/src/odes/contractionmodels/NhsContractionModel.cpp
heart/src/odes/contractionmodels/NhsContractionModel.hpp
heart/src/odes/contractionmodels/NhsModelWithBackwardSolver.cpp
heart/src/odes/contractionmodels/NhsModelWithBackwardSolver.hpp
heart/src/odes/contractionmodels/NonPhysiologicalContractionModel.cpp
heart/src/odes/contractionmodels/NonPhysiologicalContractionModel.hpp
heart/src/odes/ionicmodels/FakeBathCell.cpp
heart/src/odes/ionicmodels/FakeBathCell.hpp
heart/src/odes/ionicmodels/FitzHughNagumo1961OdeSystem.cpp
heart/src/odes/ionicmodels/FitzHughNagumo1961OdeSystem.hpp
heart/src/odes/ionicmodels/NobleVargheseKohlNoble1998WithSac.cpp
heart/src/odes/ionicmodels/NobleVargheseKohlNoble1998WithSac.hpp
heart/src/odes/ionicmodels/noncardiac/CorriasBuistICCModified.cpp
heart/src/odes/ionicmodels/noncardiac/CorriasBuistICCModified.hpp
heart/src/odes/ionicmodels/noncardiac/CorriasBuistSMCModified.cpp
heart/src/odes/ionicmodels/noncardiac/CorriasBuistSMCModified.hpp
heart/src/odes/single_cell/AbstractSteadyStateRunner.cpp
heart/src/odes/single_cell/AbstractSteadyStateRunner.hpp
heart/src/odes/single_cell/SteadyStateRunner.cpp
heart/src/odes/single_cell/SteadyStateRunner.hpp
heart/src/postprocessing/CellProperties.cpp
heart/src/postprocessing/CellProperties.hpp
heart/src/postprocessing/Hdf5ToCmguiConverter.cpp
heart/src/postprocessing/Hdf5ToCmguiConverter.hpp
heart/src/postprocessing/PostProcessingWriter.cpp
heart/src/postprocessing/PostProcessingWriter.hpp
heart/src/postprocessing/PropagationPropertiesCalculator.cpp
heart/src/postprocessing/PropagationPropertiesCalculator.hpp
heart/src/postprocessing/PseudoEcgCalculator.cpp
heart/src/postprocessing/PseudoEcgCalculator.hpp
heart/src/postprocessing/VoltageInterpolaterOntoMechanicsMesh.cpp
heart/src/postprocessing/VoltageInterpolaterOntoMechanicsMesh.hpp
heart/src/problem/AbstractCardiacProblem.cpp
heart/src/problem/AbstractCardiacProblem.hpp
heart/src/problem/AbstractOutputModifier.hpp
heart/src/problem/ActivationOutputModifier.cpp
heart/src/problem/ActivationOutputModifier.hpp
heart/src/problem/BidomainProblem.cpp
heart/src/problem/BidomainProblem.hpp
heart/src/problem/BidomainWithBathProblem.cpp
heart/src/problem/BidomainWithBathProblem.hpp
heart/src/problem/CardiacElectroMechanicsProblem.cpp
heart/src/problem/CardiacElectroMechanicsProblem.hpp
heart/src/problem/CardiacElectroMechProbRegularGeom.hpp
heart/src/problem/CardiacSimulation.cpp
heart/src/problem/CardiacSimulation.hpp
heart/src/problem/CardiacSimulationArchiver.cpp
heart/src/problem/CardiacSimulationArchiver.hpp
heart/src/problem/Electrodes.cpp
heart/src/problem/Electrodes.hpp
heart/src/problem/ElectroMechanicsProblemDefinition.cpp
heart/src/problem/ElectroMechanicsProblemDefinition.hpp
heart/src/problem/ExtendedBidomainProblem.cpp
heart/src/problem/ExtendedBidomainProblem.hpp
heart/src/problem/HeartConfig.cpp
heart/src/problem/HeartConfig.hpp
heart/src/problem/HeartConfigDefaults.hpp
heart/src/problem/HeartGeometryInformation.cpp
heart/src/problem/HeartGeometryInformation.hpp
heart/src/problem/HeartRegionCodes.cpp
heart/src/problem/HeartRegionCodes.hpp
heart/src/problem/MonodomainProblem.cpp
heart/src/problem/MonodomainProblem.hpp
heart/src/problem/PapillaryFibreCalculator.hpp
heart/src/problem/SingleTraceOutputModifier.cpp
heart/src/problem/SingleTraceOutputModifier.hpp
heart/src/problem/SolverType.hpp
heart/src/problem/StreeterFibreGenerator.cpp
heart/src/problem/StreeterFibreGenerator.hpp
heart/src/problem/cell_factories/AbstractCardiacCellFactory.cpp
heart/src/problem/cell_factories/AbstractCardiacCellFactory.hpp
heart/src/problem/cell_factories/AbstractContractionCellFactory.hpp
heart/src/problem/cell_factories/AbstractPurkinjeCellFactory.cpp
heart/src/problem/cell_factories/AbstractPurkinjeCellFactory.hpp
heart/src/problem/cell_factories/GeneralPlaneStimulusCellFactory.hpp
heart/src/problem/cell_factories/HeartConfigRelatedCellFactory.cpp
heart/src/problem/cell_factories/HeartConfigRelatedCellFactory.hpp
heart/src/problem/cell_factories/LabelBasedContractionCellFactory.hpp
heart/src/problem/cell_factories/PlaneStimulusCellFactory.hpp
heart/src/problem/cell_factories/ZeroStimulusCellFactory.hpp
heart/src/problem/conductivity_tensors/AbstractConductivityTensors.cpp
heart/src/problem/conductivity_tensors/AbstractConductivityTensors.hpp
heart/src/problem/conductivity_tensors/AxisymmetricConductivityTensors.cpp
heart/src/problem/conductivity_tensors/AxisymmetricConductivityTensors.hpp
heart/src/problem/conductivity_tensors/OrthotropicConductivityTensors.cpp
heart/src/problem/conductivity_tensors/OrthotropicConductivityTensors.hpp
heart/src/solver/electrics/AbstractCardiacFeVolumeIntegralAssembler.hpp
heart/src/solver/electrics/AbstractCorrectionTermAssembler.cpp
heart/src/solver/electrics/AbstractCorrectionTermAssembler.hpp
heart/src/solver/electrics/bidomain/AbstractBidomainSolver.cpp
heart/src/solver/electrics/bidomain/AbstractBidomainSolver.hpp
heart/src/solver/electrics/bidomain/BidomainAssembler.cpp
heart/src/solver/electrics/bidomain/BidomainAssembler.hpp
heart/src/solver/electrics/bidomain/BidomainCorrectionTermAssembler.cpp
heart/src/solver/electrics/bidomain/BidomainCorrectionTermAssembler.hpp
heart/src/solver/electrics/bidomain/BidomainMassMatrixAssembler.cpp
heart/src/solver/electrics/bidomain/BidomainMassMatrixAssembler.hpp
heart/src/solver/electrics/bidomain/BidomainNeumannSurfaceTermAssembler.hpp
heart/src/solver/electrics/bidomain/BidomainSolver.cpp
heart/src/solver/electrics/bidomain/BidomainSolver.hpp
heart/src/solver/electrics/bidomain/BidomainWithBathAssembler.cpp
heart/src/solver/electrics/bidomain/BidomainWithBathAssembler.hpp
heart/src/solver/electrics/extended_bidomain/AbstractExtendedBidomainSolver.cpp
heart/src/solver/electrics/extended_bidomain/AbstractExtendedBidomainSolver.hpp
heart/src/solver/electrics/extended_bidomain/ExtendedBidomainAssembler.cpp
heart/src/solver/electrics/extended_bidomain/ExtendedBidomainAssembler.hpp
heart/src/solver/electrics/extended_bidomain/ExtendedBidomainMassMatrixAssembler.cpp
heart/src/solver/electrics/extended_bidomain/ExtendedBidomainMassMatrixAssembler.hpp
heart/src/solver/electrics/extended_bidomain/ExtendedBidomainNeumannSurfaceTermAssembler.hpp
heart/src/solver/electrics/extended_bidomain/ExtendedBidomainSolver.cpp
heart/src/solver/electrics/extended_bidomain/ExtendedBidomainSolver.hpp
heart/src/solver/electrics/monodomain/MonodomainAssembler.cpp
heart/src/solver/electrics/monodomain/MonodomainAssembler.hpp
heart/src/solver/electrics/monodomain/MonodomainCorrectionTermAssembler.cpp
heart/src/solver/electrics/monodomain/MonodomainCorrectionTermAssembler.hpp
heart/src/solver/electrics/monodomain/MonodomainSolver.cpp
heart/src/solver/electrics/monodomain/MonodomainSolver.hpp
heart/src/solver/electrics/monodomain/MonodomainStiffnessMatrixAssembler.hpp
heart/src/solver/electrics/monodomain/OperatorSplittingMonodomainSolver.cpp
heart/src/solver/electrics/monodomain/OperatorSplittingMonodomainSolver.hpp
heart/src/solver/mechanics/AbstractCardiacMechanicsSolver.cpp
heart/src/solver/mechanics/AbstractCardiacMechanicsSolver.hpp
heart/src/solver/mechanics/AbstractCardiacMechanicsSolverInterface.hpp
heart/src/solver/mechanics/ExplicitCardiacMechanicsSolver.cpp
heart/src/solver/mechanics/ExplicitCardiacMechanicsSolver.hpp
heart/src/solver/mechanics/ImplicitCardiacMechanicsSolver.cpp
heart/src/solver/mechanics/ImplicitCardiacMechanicsSolver.hpp
heart/src/stimulus/AbstractStimulusFunction.cpp
heart/src/stimulus/AbstractStimulusFunction.hpp
heart/src/stimulus/MultiStimulus.cpp
heart/src/stimulus/MultiStimulus.hpp
heart/src/stimulus/PurkinjeVentricularJunctionStimulus.cpp
heart/src/stimulus/PurkinjeVentricularJunctionStimulus.hpp
heart/src/stimulus/RegularStimulus.cpp
heart/src/stimulus/RegularStimulus.hpp
heart/src/stimulus/RegularStimulusZeroNetCharge.cpp
heart/src/stimulus/RegularStimulusZeroNetCharge.hpp
heart/src/stimulus/S1S2Stimulus.cpp
heart/src/stimulus/S1S2Stimulus.hpp
heart/src/stimulus/SimpleStimulus.cpp
heart/src/stimulus/SimpleStimulus.hpp
heart/src/stimulus/SteadyStateRestitutionStimulus.cpp
heart/src/stimulus/SteadyStateRestitutionStimulus.hpp
heart/src/stimulus/StimulusBoundaryCondition.cpp
heart/src/stimulus/StimulusBoundaryCondition.hpp
heart/src/stimulus/ZeroStimulus.cpp
heart/src/stimulus/ZeroStimulus.hpp
heart/src/stimulus/tissue_electrodes/AbstractStimulusFactory.cpp
heart/src/stimulus/tissue_electrodes/AbstractStimulusFactory.hpp
heart/src/stimulus/tissue_electrodes/ElectrodesStimulusFactory.cpp
heart/src/stimulus/tissue_electrodes/ElectrodesStimulusFactory.hpp
heart/src/stimulus/tissue_electrodes/ZeroNetChargeElectrodes.cpp
heart/src/stimulus/tissue_electrodes/ZeroNetChargeElectrodes.hpp
heart/src/tissue/AbstractCardiacTissue.cpp
heart/src/tissue/AbstractCardiacTissue.hpp
heart/src/tissue/AbstractConductivityModifier.hpp
heart/src/tissue/BidomainTissue.cpp
heart/src/tissue/BidomainTissue.hpp
heart/src/tissue/ExtendedBidomainTissue.cpp
heart/src/tissue/ExtendedBidomainTissue.hpp
heart/src/tissue/MonodomainTissue.cpp
heart/src/tissue/MonodomainTissue.hpp
io/src/common/AbstractHdf5Access.cpp
io/src/common/AbstractHdf5Access.hpp
io/src/common/ColumnDataConstants.hpp
io/src/fortests/CompareHdf5ResultsFiles.cpp
io/src/fortests/CompareHdf5ResultsFiles.hpp
io/src/reader/AbstractDataReader.hpp
io/src/reader/ColumnDataReader.cpp
io/src/reader/ColumnDataReader.hpp
io/src/reader/Hdf5DataReader.cpp
io/src/reader/Hdf5DataReader.hpp
io/src/writer/AbstractDataWriter.hpp
io/src/writer/ColumnDataWriter.cpp
io/src/writer/ColumnDataWriter.hpp
io/src/writer/DataWriterVariable.hpp
io/src/writer/Hdf5DataWriter.cpp
io/src/writer/Hdf5DataWriter.hpp
io/src/writer/ParallelColumnDataWriter.cpp
io/src/writer/ParallelColumnDataWriter.hpp
io/src/writer/SimpleDataWriter.cpp
io/src/writer/SimpleDataWriter.hpp
linalg/src/AbstractNonlinearSolver.hpp
linalg/src/FourthOrderTensor.hpp
linalg/src/LinearSystem.cpp
linalg/src/LinearSystem.hpp
linalg/src/PCBlockDiagonal.cpp
linalg/src/PCBlockDiagonal.hpp
linalg/src/PCLDUFactorisation.cpp
linalg/src/PCLDUFactorisation.hpp
linalg/src/PCTwoLevelsBlockDiagonal.cpp
linalg/src/PCTwoLevelsBlockDiagonal.hpp
linalg/src/PetscMatTools.cpp
linalg/src/PetscMatTools.hpp
linalg/src/PetscVecTools.cpp
linalg/src/PetscVecTools.hpp
linalg/src/SimpleNewtonNonlinearSolver.cpp
linalg/src/SimpleNewtonNonlinearSolver.hpp
linalg/src/SimplePetscNonlinearSolver.cpp
linalg/src/SimplePetscNonlinearSolver.hpp
linalg/src/UblasCustomFunctions.cpp
linalg/src/UblasCustomFunctions.hpp
linalg/src/UblasMatrixInclude.hpp
linalg/src/UblasVectorInclude.hpp
mesh/src/3rdparty/tetgen1.4.2/predicates.cpp
mesh/src/3rdparty/tetgen1.4.2/predicates.hpp
mesh/src/3rdparty/tetgen1.4.2/tetgen.cpp
mesh/src/3rdparty/triangle/triangle.cpp
mesh/src/common/AbstractChasteRegion.hpp
mesh/src/common/AbstractElement.cpp
mesh/src/common/AbstractElement.hpp
mesh/src/common/AbstractMesh.cpp
mesh/src/common/AbstractMesh.hpp
mesh/src/common/AbstractTetrahedralElement.cpp
mesh/src/common/AbstractTetrahedralElement.hpp
mesh/src/common/AbstractTetrahedralMesh.cpp
mesh/src/common/AbstractTetrahedralMesh.hpp
mesh/src/common/BoundaryElement.cpp
mesh/src/common/BoundaryElement.hpp
mesh/src/common/ChastePoint.cpp
mesh/src/common/ChastePoint.hpp
mesh/src/common/DistributedQuadraticMesh.cpp
mesh/src/common/DistributedQuadraticMesh.hpp
mesh/src/common/DistributedTetrahedralMesh.cpp
mesh/src/common/DistributedTetrahedralMesh.hpp
mesh/src/common/DistributedTetrahedralMeshPartitionType.hpp
mesh/src/common/Element.cpp
mesh/src/common/Element.hpp
mesh/src/common/MixedDimensionMesh.cpp
mesh/src/common/MixedDimensionMesh.hpp
mesh/src/common/MutableElement.cpp
mesh/src/common/MutableElement.hpp
mesh/src/common/MutableMesh.cpp
mesh/src/common/MutableMesh.hpp
mesh/src/common/Node.cpp
mesh/src/common/Node.hpp
mesh/src/common/NodeAttributes.cpp
mesh/src/common/NodeAttributes.hpp
mesh/src/common/NodeMap.cpp
mesh/src/common/NodeMap.hpp
mesh/src/common/NodePartitioner.cpp
mesh/src/common/NodePartitioner.hpp
mesh/src/common/NodesOnlyMesh.cpp
mesh/src/common/NodesOnlyMesh.hpp
mesh/src/common/NonCachedTetrahedralMesh.cpp
mesh/src/common/NonCachedTetrahedralMesh.hpp
mesh/src/common/QuadraticMesh.cpp
mesh/src/common/QuadraticMesh.hpp
mesh/src/common/QuadraticMeshHelper.cpp
mesh/src/common/QuadraticMeshHelper.hpp
mesh/src/common/TetrahedralMesh.cpp
mesh/src/common/TetrahedralMesh.hpp
mesh/src/reader/AbstractCachedMeshReader.cpp
mesh/src/reader/AbstractCachedMeshReader.hpp
mesh/src/reader/AbstractMeshReader.cpp
mesh/src/reader/AbstractMeshReader.hpp
mesh/src/reader/FemlabMeshReader.cpp
mesh/src/reader/FemlabMeshReader.hpp
mesh/src/reader/GenericMeshReader.hpp
mesh/src/reader/GmshMeshReader.cpp
mesh/src/reader/GmshMeshReader.hpp
mesh/src/reader/MemfemMeshReader.cpp
mesh/src/reader/MemfemMeshReader.hpp
mesh/src/reader/TrianglesMeshReader.cpp
mesh/src/reader/TrianglesMeshReader.hpp
mesh/src/reader/VtkMeshReader.cpp
mesh/src/reader/VtkMeshReader.hpp
mesh/src/utilities/AbstractPerElementWriter.hpp
mesh/src/utilities/Box.cpp
mesh/src/utilities/Box.hpp
mesh/src/utilities/BoxCollection.cpp
mesh/src/utilities/BoxCollection.hpp
mesh/src/utilities/ChasteCuboid.cpp
mesh/src/utilities/ChasteCuboid.hpp
mesh/src/utilities/ChasteEllipsoid.cpp
mesh/src/utilities/ChasteEllipsoid.hpp
mesh/src/utilities/ChasteNodesList.cpp
mesh/src/utilities/ChasteNodesList.hpp
mesh/src/utilities/CuboidMeshConstructor.cpp
mesh/src/utilities/CuboidMeshConstructor.hpp
mesh/src/utilities/DistanceMapCalculator.cpp
mesh/src/utilities/DistanceMapCalculator.hpp
mesh/src/utilities/DistributedBoxCollection.cpp
mesh/src/utilities/DistributedBoxCollection.hpp
mesh/src/vertex/Cylindrical2dVertexMesh.cpp
mesh/src/vertex/Cylindrical2dVertexMesh.hpp
mesh/src/vertex/CylindricalHoneycombVertexMeshGenerator.cpp
mesh/src/vertex/CylindricalHoneycombVertexMeshGenerator.hpp
mesh/src/vertex/HoneycombVertexMeshGenerator.cpp
mesh/src/vertex/HoneycombVertexMeshGenerator.hpp
mesh/src/vertex/MutableVertexMesh.cpp
mesh/src/vertex/MutableVertexMesh.hpp
mesh/src/vertex/Toroidal2dVertexMesh.cpp
mesh/src/vertex/Toroidal2dVertexMesh.hpp
mesh/src/vertex/ToroidalHoneycombVertexMeshGenerator.cpp
mesh/src/vertex/ToroidalHoneycombVertexMeshGenerator.hpp
mesh/src/vertex/VertexElement.cpp
mesh/src/vertex/VertexElement.hpp
mesh/src/vertex/VertexElementMap.cpp
mesh/src/vertex/VertexElementMap.hpp
mesh/src/vertex/VertexMesh.cpp
mesh/src/vertex/VertexMesh.hpp
mesh/src/vertex/VertexMeshReader.cpp
mesh/src/vertex/VertexMeshReader.hpp
mesh/src/vertex/VertexMeshWriter.cpp
mesh/src/vertex/VertexMeshWriter.hpp
mesh/src/writer/AbstractMeshWriter.cpp
mesh/src/writer/AbstractMeshWriter.hpp
mesh/src/writer/AbstractTetrahedralMeshWriter.cpp
mesh/src/writer/AbstractTetrahedralMeshWriter.hpp
mesh/src/writer/CmguiDeformedSolutionsWriter.cpp
mesh/src/writer/CmguiDeformedSolutionsWriter.hpp
mesh/src/writer/CmguiMeshWriter.cpp
mesh/src/writer/CmguiMeshWriter.hpp
mesh/src/writer/MeshalyzerMeshWriter.cpp
mesh/src/writer/MeshalyzerMeshWriter.hpp
mesh/src/writer/TrianglesMeshWriter.cpp
mesh/src/writer/TrianglesMeshWriter.hpp
mesh/src/writer/VtkMeshWriter.cpp
mesh/src/writer/VtkMeshWriter.hpp
mesh/src/writer/XdmfMeshWriter.cpp
mesh/src/writer/XdmfMeshWriter.hpp
ode/src/common/AbstractCvodeSystem.cpp
ode/src/common/AbstractCvodeSystem.hpp
ode/src/common/AbstractOdeSystem.cpp
ode/src/common/AbstractOdeSystem.hpp
ode/src/common/AbstractOdeSystemForCoupledPdeSystem.hpp
ode/src/common/AbstractOdeSystemInformation.cpp
ode/src/common/AbstractOdeSystemInformation.hpp
ode/src/common/AbstractOdeSystemWithAnalyticJacobian.hpp
ode/src/common/AbstractParameterisedSystem.cpp
ode/src/common/AbstractParameterisedSystem.hpp
ode/src/common/AbstractUntemplatedParameterisedSystem.cpp
ode/src/common/AbstractUntemplatedParameterisedSystem.hpp
ode/src/common/CombinedOdeSystem.cpp
ode/src/common/CombinedOdeSystem.hpp
ode/src/common/CombinedOdeSystemInformation.cpp
ode/src/common/CombinedOdeSystemInformation.hpp
ode/src/common/OdeSolution.cpp
ode/src/common/OdeSolution.hpp
ode/src/common/OdeSystemInformation.hpp
ode/src/fortests/OdeSystemForCoupledHeatEquation.hpp
ode/src/fortests/OdeSystemForCoupledHeatEquationWithSource.hpp
ode/src/solver/AbstractIvpOdeSolver.cpp
ode/src/solver/AbstractIvpOdeSolver.hpp
ode/src/solver/AbstractOneStepIvpOdeSolver.cpp
ode/src/solver/AbstractOneStepIvpOdeSolver.hpp
ode/src/solver/BackwardEulerIvpOdeSolver.cpp
ode/src/solver/BackwardEulerIvpOdeSolver.hpp
ode/src/solver/CvodeAdaptor.cpp
ode/src/solver/CvodeAdaptor.hpp
ode/src/solver/EulerIvpOdeSolver.cpp
ode/src/solver/EulerIvpOdeSolver.hpp
ode/src/solver/GRL1IvpOdeSolver.cpp
ode/src/solver/GRL1IvpOdeSolver.hpp
ode/src/solver/GRL2IvpOdeSolver.cpp
ode/src/solver/GRL2IvpOdeSolver.hpp
ode/src/solver/HeunIvpOdeSolver.cpp
ode/src/solver/HeunIvpOdeSolver.hpp
ode/src/solver/MockEulerIvpOdeSolver.cpp
ode/src/solver/MockEulerIvpOdeSolver.hpp
ode/src/solver/RungeKutta2IvpOdeSolver.cpp
ode/src/solver/RungeKutta2IvpOdeSolver.hpp
ode/src/solver/RungeKutta4IvpOdeSolver.cpp
ode/src/solver/RungeKutta4IvpOdeSolver.hpp
ode/src/solver/RungeKuttaFehlbergIvpOdeSolver.cpp
ode/src/solver/RungeKuttaFehlbergIvpOdeSolver.hpp
pde/src/common/AbstractBoundaryCondition.hpp
pde/src/common/AbstractBoundaryConditionsContainer.cpp
pde/src/common/AbstractBoundaryConditionsContainer.hpp
pde/src/common/AbstractBoundaryConditionsContainerImplementation.hpp
pde/src/common/AbstractFunctionalCalculator.hpp
pde/src/common/AbstractTimeAdaptivityController.hpp
pde/src/common/BoundaryConditionsContainer.cpp
pde/src/common/BoundaryConditionsContainer.hpp
pde/src/common/BoundaryConditionsContainerImplementation.hpp
pde/src/common/ConstBoundaryCondition.cpp
pde/src/common/ConstBoundaryCondition.hpp
pde/src/common/FineCoarseMeshPair.cpp
pde/src/common/FineCoarseMeshPair.hpp
pde/src/common/FunctionalBoundaryCondition.cpp
pde/src/common/FunctionalBoundaryCondition.hpp
pde/src/common/PdeSimulationTime.cpp
pde/src/common/PdeSimulationTime.hpp
pde/src/common/QuadraturePointsGroup.cpp
pde/src/common/QuadraturePointsGroup.hpp
pde/src/postprocessing/AbstractHdf5Converter.cpp
pde/src/postprocessing/AbstractHdf5Converter.hpp
pde/src/postprocessing/Hdf5ToMeshalyzerConverter.cpp
pde/src/postprocessing/Hdf5ToMeshalyzerConverter.hpp
pde/src/postprocessing/Hdf5ToTxtConverter.cpp
pde/src/postprocessing/Hdf5ToTxtConverter.hpp
pde/src/postprocessing/Hdf5ToVtkConverter.cpp
pde/src/postprocessing/Hdf5ToVtkConverter.hpp
pde/src/postprocessing/Hdf5ToXdmfConverter.cpp
pde/src/postprocessing/Hdf5ToXdmfConverter.hpp
pde/src/problem/AbstractLinearEllipticPde.hpp
pde/src/problem/AbstractLinearParabolicPde.hpp
pde/src/problem/AbstractLinearParabolicPdeSystemForCoupledOdeSystem.hpp
pde/src/problem/AbstractNonlinearEllipticPde.hpp
pde/src/solver/AbstractAssemblerSolverHybrid.hpp
pde/src/solver/AbstractDynamicLinearPdeSolver.hpp
pde/src/solver/AbstractFeAssemblerCommon.hpp
pde/src/solver/AbstractFeAssemblerInterface.hpp
pde/src/solver/AbstractFeCableIntegralAssembler.hpp
pde/src/solver/AbstractFeSurfaceIntegralAssembler.hpp
pde/src/solver/AbstractFeVolumeIntegralAssembler.hpp
pde/src/solver/AbstractLinearPdeSolver.hpp
pde/src/solver/AbstractNonlinearAssemblerSolverHybrid.hpp
pde/src/solver/AbstractStaticLinearPdeSolver.hpp
pde/src/solver/GaussianQuadratureRule.cpp
pde/src/solver/GaussianQuadratureRule.hpp
pde/src/solver/LinearBasisFunction.cpp
pde/src/solver/LinearBasisFunction.hpp
pde/src/solver/LinearParabolicPdeSystemWithCoupledOdeSystemSolver.hpp
pde/src/solver/MassMatrixAssembler.hpp
pde/src/solver/NaturalNeumannSurfaceTermAssembler.hpp
pde/src/solver/QuadraticBasisFunction.cpp
pde/src/solver/QuadraticBasisFunction.hpp
pde/src/solver/SimpleLinearEllipticSolver.cpp
pde/src/solver/SimpleLinearEllipticSolver.hpp
pde/src/solver/SimpleLinearParabolicSolver.cpp
pde/src/solver/SimpleLinearParabolicSolver.hpp
pde/src/solver/SimpleNonlinearEllipticSolver.cpp
pde/src/solver/SimpleNonlinearEllipticSolver.hpp
pde/src/solver/StiffnessMatrixAssembler.hpp