==935190== Memcheck, a memory error detector
==935190== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==935190== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==935190== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedVsBidomainProblem -malloc_debug -malloc_dump -memory_info
==935190== Parent PID: 914403
==935190== 
==935190== WARNING: pwritev(vector[...]) is an obsolete suppression line not supported in valgrind 3.15 or later.
==935190== You should replace [...] by a specific index such as [0] or [1] or [2] or similar
==935190== 
==935190== Syscall param socketcall.getsockopt(optlen) points to uninitialised byte(s)
==935190==    at 0xA33679E: getsockopt_syscall (getsockopt.c:29)
==935190==    by 0xA33679E: getsockopt (getsockopt.c:94)
==935190==    by 0x1444F157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==935190==    by 0x14456A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==935190==    by 0x1445DDF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==935190==    by 0x1435D3C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==935190==    by 0x142D6E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so)
==935190==    by 0x13A95E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so)
==935190==    by 0xF29D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==935190==    by 0xBA37418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==935190==    by 0xB9D0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==935190==    by 0xA6C7D38: PetscInitialize (pinit.c:924)
==935190==    by 0x9C0D58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==935190==    by 0x9C0D5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==935190==    by 0x1374BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==935190==    by 0x13200F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==935190==    by 0x13546E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==935190==    by 0x13530E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==935190==    by 0x1359A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==935190==    by 0x130340: main (TestExtendedVsBidomainProblem.cpp:19)
==935190==  Address 0x1ffeffdfcc is on thread 1's stack
==935190==  in frame #2, created by pmix_ptl_base_make_connection (???:)
==935190== 
{
   <insert_a_suppression_name_here>
   Memcheck:Param
   socketcall.getsockopt(optlen)
   fun:getsockopt_syscall
   fun:getsockopt
   fun:pmix_ptl_base_set_timeout
   fun:pmix_ptl_base_make_connection
   obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2
   fun:PMIx_Init
   fun:ext3x_client_init
   obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so
   fun:orte_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==935190== Syscall param socketcall.getsockopt(optlen_out) points to uninitialised byte(s)
==935190==    at 0xA33679E: getsockopt_syscall (getsockopt.c:29)
==935190==    by 0xA33679E: getsockopt (getsockopt.c:94)
==935190==    by 0x1444F157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==935190==    by 0x14456A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==935190==    by 0x1445DDF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==935190==    by 0x1435D3C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==935190==    by 0x142D6E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so)
==935190==    by 0x13A95E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so)
==935190==    by 0xF29D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==935190==    by 0xBA37418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==935190==    by 0xB9D0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==935190==    by 0xA6C7D38: PetscInitialize (pinit.c:924)
==935190==    by 0x9C0D58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==935190==    by 0x9C0D5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==935190==    by 0x1374BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==935190==    by 0x13200F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==935190==    by 0x13546E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==935190==    by 0x13530E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==935190==    by 0x1359A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==935190==    by 0x130340: main (TestExtendedVsBidomainProblem.cpp:19)
==935190==  Address 0x1ffeffdfcc is on thread 1's stack
==935190==  in frame #2, created by pmix_ptl_base_make_connection (???:)
==935190== 
{
   <insert_a_suppression_name_here>
   Memcheck:Param
   socketcall.getsockopt(optlen_out)
   fun:getsockopt_syscall
   fun:getsockopt
   fun:pmix_ptl_base_set_timeout
   fun:pmix_ptl_base_make_connection
   obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2
   fun:PMIx_Init
   fun:ext3x_client_init
   obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so
   fun:orte_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==935190== Syscall param setsockopt(optlen) contains uninitialised byte(s)
==935190==    at 0xA336C7E: setsockopt_syscall (setsockopt.c:29)
==935190==    by 0xA336C7E: setsockopt (setsockopt.c:95)
==935190==    by 0x14456BA9: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==935190==    by 0x1445DDF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==935190==    by 0x1435D3C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==935190==    by 0x142D6E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so)
==935190==    by 0x13A95E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so)
==935190==    by 0xF29D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==935190==    by 0xBA37418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==935190==    by 0xB9D0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==935190==    by 0xA6C7D38: PetscInitialize (pinit.c:924)
==935190==    by 0x9C0D58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==935190==    by 0x9C0D5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==935190==    by 0x1374BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==935190==    by 0x13200F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==935190==    by 0x13546E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==935190==    by 0x13530E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==935190==    by 0x1359A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==935190==    by 0x130340: main (TestExtendedVsBidomainProblem.cpp:19)
==935190== 
{
   <insert_a_suppression_name_here>
   Memcheck:Param
   setsockopt(optlen)
   fun:setsockopt_syscall
   fun:setsockopt
   fun:pmix_ptl_base_make_connection
   obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2
   fun:PMIx_Init
   fun:ext3x_client_init
   obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so
   fun:orte_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==935190== Syscall param pwrite64(buf) points to uninitialised byte(s)
==935190==    at 0xA3219EF: __libc_pwrite64 (pwrite64.c:25)
==935190==    by 0xA3219EF: pwrite (pwrite64.c:23)
==935190==    by 0x17CCC9D2: mca_fbtl_posix_pwritev (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_fbtl_posix.so)
==935190==    by 0x17CDC419: mca_common_ompio_file_write (in /usr/lib/x86_64-linux-gnu/libmca_common_ompio.so.41.29.2)
==935190==    by 0x17CDC79A: mca_common_ompio_file_write_at (in /usr/lib/x86_64-linux-gnu/libmca_common_ompio.so.41.29.2)
==935190==    by 0x17BC789A: mca_io_ompio_file_write_at (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_io_ompio.so)
==935190==    by 0xB9C46A7: PMPI_File_write_at (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==935190==    by 0xC21FFEB: ??? (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC05F4ED: H5FD_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC042313: H5F__accum_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC13D442: H5PB_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC049DEA: H5F_block_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xBFD3E98: H5C__flush_single_entry (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC2133F9: H5C_apply_candidate_list (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC2149CA: H5AC__run_sync_point (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC21547E: H5AC__flush_entries (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xBFB054C: H5AC_flush (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC048936: ??? (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC0493FE: H5F__dest (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC04CBB2: H5F_try_close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC04CEFB: H5F__close_cb (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC0BC51F: H5I_dec_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC0BC5EA: H5I_dec_app_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC049831: H5F__close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC03E881: H5Fclose (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0x9B3C967: Hdf5DataWriter::Close() (Hdf5DataWriter.cpp:1100)
==935190==    by 0x9B37647: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:273)
==935190==    by 0x9B376ED: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:283)
==935190==    by 0x678ABE5: AbstractCardiacProblem<1u, 1u, 2u>::CloseFilesAndPostProcess() (AbstractCardiacProblem.cpp:597)
==935190==    by 0x678A785: AbstractCardiacProblem<1u, 1u, 2u>::Solve() (AbstractCardiacProblem.cpp:582)
==935190==    by 0x13A877: TestExtendedVsBidomainProblem::RunBidomain() (TestExtendedVsBidomainProblem.hpp:226)
==935190==    by 0x13A9DE: TestExtendedVsBidomainProblem::TestCompareStimulationOfFirstCell() (TestExtendedVsBidomainProblem.hpp:233)
==935190==    by 0x147B38: TestDescription_TestExtendedVsBidomainProblem_TestCompareStimulationOfFirstCell::runTest() (TestExtendedVsBidomainProblem.cpp:31)
==935190==    by 0x13160A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==935190==    by 0x13571C: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==935190==    by 0x135601: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==935190==    by 0x1354A7: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==935190==    by 0x13530E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==935190==    by 0x1359A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==935190==    by 0x130340: main (TestExtendedVsBidomainProblem.cpp:19)
==935190==  Address 0x15e02f9e is 62 bytes inside a block of size 320 alloc'd
==935190==    at 0x4848899: malloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==935190==    by 0xBFD3E26: H5C__flush_single_entry (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC2133F9: H5C_apply_candidate_list (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC2149CA: H5AC__run_sync_point (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC21547E: H5AC__flush_entries (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xBFB054C: H5AC_flush (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC048936: ??? (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC0493FE: H5F__dest (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC04CBB2: H5F_try_close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC04CEFB: H5F__close_cb (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC0BC51F: H5I_dec_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC0BC5EA: H5I_dec_app_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC049831: H5F__close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0xC03E881: H5Fclose (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==935190==    by 0x9B3C967: Hdf5DataWriter::Close() (Hdf5DataWriter.cpp:1100)
==935190==    by 0x9B37647: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:273)
==935190==    by 0x9B376ED: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:283)
==935190==    by 0x678ABE5: AbstractCardiacProblem<1u, 1u, 2u>::CloseFilesAndPostProcess() (AbstractCardiacProblem.cpp:597)
==935190==    by 0x678A785: AbstractCardiacProblem<1u, 1u, 2u>::Solve() (AbstractCardiacProblem.cpp:582)
==935190==    by 0x13A877: TestExtendedVsBidomainProblem::RunBidomain() (TestExtendedVsBidomainProblem.hpp:226)
==935190==    by 0x13A9DE: TestExtendedVsBidomainProblem::TestCompareStimulationOfFirstCell() (TestExtendedVsBidomainProblem.hpp:233)
==935190==    by 0x147B38: TestDescription_TestExtendedVsBidomainProblem_TestCompareStimulationOfFirstCell::runTest() (TestExtendedVsBidomainProblem.cpp:31)
==935190==    by 0x13160A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==935190==    by 0x13571C: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==935190==    by 0x135601: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==935190==    by 0x1354A7: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==935190==    by 0x13530E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==935190==    by 0x1359A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==935190==    by 0x130340: main (TestExtendedVsBidomainProblem.cpp:19)
==935190== 
{
   <insert_a_suppression_name_here>
   Memcheck:Param
   pwrite64(buf)
   fun:__libc_pwrite64
   fun:pwrite
   fun:mca_fbtl_posix_pwritev
   fun:mca_common_ompio_file_write
   fun:mca_common_ompio_file_write_at
   fun:mca_io_ompio_file_write_at
   fun:PMPI_File_write_at
   obj:/usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0
   fun:H5FD_write
   fun:H5F__accum_write
   fun:H5PB_write
   fun:H5F_block_write
   fun:H5C__flush_single_entry
   fun:H5C_apply_candidate_list
   fun:H5AC__run_sync_point
   fun:H5AC__flush_entries
   fun:H5AC_flush
   obj:/usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0
   fun:H5F__dest
   fun:H5F_try_close
   fun:H5F__close_cb
   fun:H5I_dec_ref
   fun:H5I_dec_app_ref
   fun:H5F__close
   fun:H5Fclose
   fun:_ZN14Hdf5DataWriter5CloseEv
   fun:_ZN14Hdf5DataWriterD1Ev
   fun:_ZN14Hdf5DataWriterD0Ev
   fun:_ZN22AbstractCardiacProblemILj1ELj1ELj2EE24CloseFilesAndPostProcessEv
   fun:_ZN22AbstractCardiacProblemILj1ELj1ELj2EE5SolveEv
   fun:_ZN29TestExtendedVsBidomainProblem11RunBidomainEv
   fun:_ZN29TestExtendedVsBidomainProblem33TestCompareStimulationOfFirstCellEv
   fun:_ZN79TestDescription_TestExtendedVsBidomainProblem_TestCompareStimulationOfFirstCell7runTestEv
   fun:_ZN7CxxTest19RealTestDescription3runEv
   fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE
   fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==935190== 
==935190== FILE DESCRIPTORS: 9 open (3 std) at exit.
==935190== Open file descriptor 12:
==935190==    at 0xA32422D: pipe (pipe.c:29)
==935190==    by 0x13A9607D: ???
==935190==    by 0xF29D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==935190==    by 0xBA37418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==935190==    by 0xB9D0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==935190==    by 0xA6C7D38: PetscInitialize (pinit.c:924)
==935190==    by 0x9C0D58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==935190==    by 0x9C0D5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==935190==    by 0x1374BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==935190==    by 0x13200F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==935190==    by 0x13546E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==935190==    by 0x13530E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==935190==    by 0x1359A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==935190==    by 0x130340: main (TestExtendedVsBidomainProblem.cpp:19)
==935190== 
==935190== Open file descriptor 8: /dev/shm/open_mpi.0000
==935190==    at 0xA328BCC: __open_nocancel (open64_nocancel.c:39)
==935190==    by 0xA2ACC4F: shm_open@@GLIBC_2.34 (shm_open.c:40)
==935190==    by 0x9C45822: ???
==935190==    by 0x9C4596F: ???
==935190==    by 0xF3426DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==935190==    by 0xF342938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==935190==    by 0xF2F8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==935190==    by 0xF29D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==935190==    by 0xBA37418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==935190==    by 0xB9D0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==935190==    by 0xA6C7D38: PetscInitialize (pinit.c:924)
==935190==    by 0x9C0D58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==935190==    by 0x9C0D5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==935190==    by 0x1374BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==935190==    by 0x13200F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==935190==    by 0x13546E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==935190==    by 0x13530E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==935190==    by 0x1359A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==935190==    by 0x130340: main (TestExtendedVsBidomainProblem.cpp:19)
==935190== 
==935190== Open file descriptor 111:
==935190==    <inherited from parent>
==935190== 
==935190== Open file descriptor 108:
==935190==    <inherited from parent>
==935190== 
==935190== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedVsBidomainProblem_valgrind.txt
==935190==    <inherited from parent>
==935190== 
==935190== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==935190==    <inherited from parent>
==935190== 
==935190== 
==935190== HEAP SUMMARY:
==935190==     in use at exit: 701,234 bytes in 9,387 blocks
==935190==   total heap usage: 467,616 allocs, 458,229 frees, 1,460,934,586 bytes allocated
==935190== 
==935190== 552 bytes in 1 blocks are definitely lost in loss record 44 of 67
==935190==    at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==935190==    by 0x14364C13: ???
==935190==    by 0x1436522C: ???
==935190==    by 0x142D84B7: ???
==935190==    by 0xB99D15A: ompi_proc_complete_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==935190==    by 0xBA37A97: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==935190==    by 0xB9D0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==935190==    by 0xA6C7D38: PetscInitialize (pinit.c:924)
==935190==    by 0x9C0D58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==935190==    by 0x9C0D5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==935190==    by 0x1374BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==935190==    by 0x13200F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==935190==    by 0x13546E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==935190==    by 0x13530E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==935190==    by 0x1359A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==935190==    by 0x130340: main (TestExtendedVsBidomainProblem.cpp:19)
==935190== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: definite
   fun:calloc
   obj:*
   obj:*
   obj:*
   fun:ompi_proc_complete_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==935190== 685,226 (136 direct, 685,090 indirect) bytes in 1 blocks are definitely lost in loss record 67 of 67
==935190==    at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==935190==    by 0x154D774E: ???
==935190==    by 0x154D7E0B: ???
==935190==    by 0x154DAF56: ???
==935190==    by 0x154D065D: ???
==935190==    by 0x154D0FA3: ???
==935190==    by 0xF3AEF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==935190==    by 0xF38AAE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==935190==    by 0xF33BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==935190==    by 0xF268EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==935190==    by 0x13A96F03: ???
==935190==    by 0xF29D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==935190==    by 0xBA37418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==935190==    by 0xB9D0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==935190==    by 0xA6C7D38: PetscInitialize (pinit.c:924)
==935190==    by 0x9C0D58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==935190==    by 0x9C0D5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==935190==    by 0x1374BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==935190==    by 0x13200F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==935190==    by 0x13546E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==935190==    by 0x13530E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==935190==    by 0x1359A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==935190==    by 0x130340: main (TestExtendedVsBidomainProblem.cpp:19)
==935190== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: definite
   fun:calloc
   obj:*
   obj:*
   obj:*
   obj:*
   obj:*
   obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2
   fun:hwloc_topology_load
   fun:opal_hwloc_base_get_topology
   fun:orte_ess_base_proc_binding
   obj:*
   fun:orte_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==935190== LEAK SUMMARY:
==935190==    definitely lost: 688 bytes in 2 blocks
==935190==    indirectly lost: 1,760 bytes in 16 blocks
==935190==      possibly lost: 0 bytes in 0 blocks
==935190==    still reachable: 1,531 bytes in 6 blocks
==935190==         suppressed: 697,255 bytes in 9,363 blocks
==935190== Reachable blocks (those to which a pointer was found) are not shown.
==935190== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==935190== 
==935190== Use --track-origins=yes to see where uninitialised values come from
==935190== For lists of detected and suppressed errors, rerun with: -s
==935190== ERROR SUMMARY: 32 errors from 6 contexts (suppressed: 30 from 30)
