==936744== Memcheck, a memory error detector ==936744== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==936744== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==936744== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestElectroMechanicsExactSolution -malloc_debug -malloc_dump -memory_info ==936744== Parent PID: 914403 ==936744== ==936744== WARNING: pwritev(vector[...]) is an obsolete suppression line not supported in valgrind 3.15 or later. ==936744== You should replace [...] by a specific index such as [0] or [1] or [2] or similar ==936744== ==936744== Syscall param socketcall.getsockopt(optlen) points to uninitialised byte(s) ==936744== at 0xA21779E: getsockopt_syscall (getsockopt.c:29) ==936744== by 0xA21779E: getsockopt (getsockopt.c:94) ==936744== by 0x1444D157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==936744== by 0x14454A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==936744== by 0x1445BDF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==936744== by 0x1435B3C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==936744== by 0x142D4E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==936744== by 0x13A93E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==936744== by 0xCCDD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==936744== by 0x9A0E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936744== by 0x99A7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936744== by 0xA40DD38: PetscInitialize (pinit.c:924) ==936744== by 0x98D058B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==936744== by 0x98D05D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==936744== by 0x137C7A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==936744== by 0x13132D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==936744== by 0x134074: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==936744== by 0x133F6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==936744== by 0x134583: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==936744== by 0x12F100: main (TestElectroMechanicsExactSolution.cpp:18) ==936744== Address 0x1ffeffdfcc is on thread 1's stack ==936744== in frame #2, created by pmix_ptl_base_make_connection (???:) ==936744== { Memcheck:Param socketcall.getsockopt(optlen) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==936744== Syscall param socketcall.getsockopt(optlen_out) points to uninitialised byte(s) ==936744== at 0xA21779E: getsockopt_syscall (getsockopt.c:29) ==936744== by 0xA21779E: getsockopt (getsockopt.c:94) ==936744== by 0x1444D157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==936744== by 0x14454A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==936744== by 0x1445BDF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==936744== by 0x1435B3C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==936744== by 0x142D4E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==936744== by 0x13A93E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==936744== by 0xCCDD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==936744== by 0x9A0E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936744== by 0x99A7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936744== by 0xA40DD38: PetscInitialize (pinit.c:924) ==936744== by 0x98D058B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==936744== by 0x98D05D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==936744== by 0x137C7A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==936744== by 0x13132D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==936744== by 0x134074: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==936744== by 0x133F6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==936744== by 0x134583: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==936744== by 0x12F100: main (TestElectroMechanicsExactSolution.cpp:18) ==936744== Address 0x1ffeffdfcc is on thread 1's stack ==936744== in frame #2, created by pmix_ptl_base_make_connection (???:) ==936744== { Memcheck:Param socketcall.getsockopt(optlen_out) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==936744== Syscall param setsockopt(optlen) contains uninitialised byte(s) ==936744== at 0xA217C7E: setsockopt_syscall (setsockopt.c:29) ==936744== by 0xA217C7E: setsockopt (setsockopt.c:95) ==936744== by 0x14454BA9: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==936744== by 0x1445BDF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==936744== by 0x1435B3C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==936744== by 0x142D4E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==936744== by 0x13A93E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==936744== by 0xCCDD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==936744== by 0x9A0E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936744== by 0x99A7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936744== by 0xA40DD38: PetscInitialize (pinit.c:924) ==936744== by 0x98D058B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==936744== by 0x98D05D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==936744== by 0x137C7A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==936744== by 0x13132D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==936744== by 0x134074: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==936744== by 0x133F6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==936744== by 0x134583: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==936744== by 0x12F100: main (TestElectroMechanicsExactSolution.cpp:18) ==936744== { Memcheck:Param setsockopt(optlen) fun:setsockopt_syscall fun:setsockopt fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==936744== Syscall param pwrite64(buf) points to uninitialised byte(s) ==936744== at 0xA2029EF: __libc_pwrite64 (pwrite64.c:25) ==936744== by 0xA2029EF: pwrite (pwrite64.c:23) ==936744== by 0x1A17E9D2: mca_fbtl_posix_pwritev (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_fbtl_posix.so) ==936744== by 0x1A18E419: mca_common_ompio_file_write (in /usr/lib/x86_64-linux-gnu/libmca_common_ompio.so.41.29.2) ==936744== by 0x1A18E79A: mca_common_ompio_file_write_at (in /usr/lib/x86_64-linux-gnu/libmca_common_ompio.so.41.29.2) ==936744== by 0x17BC589A: mca_io_ompio_file_write_at (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_io_ompio.so) ==936744== by 0x999B6A7: PMPI_File_write_at (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936744== by 0xEE30FEB: ??? (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xEC704ED: H5FD_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xEC53313: H5F__accum_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xED4E442: H5PB_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xEC5ADEA: H5F_block_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xEBE4E98: H5C__flush_single_entry (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xEE243F9: H5C_apply_candidate_list (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xEE259CA: H5AC__run_sync_point (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xEE2647E: H5AC__flush_entries (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xEBC154C: H5AC_flush (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xEC59936: ??? (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xEC5A3FE: H5F__dest (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xEC5DBB2: H5F_try_close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xEC5DEFB: H5F__close_cb (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xECCD51F: H5I_dec_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xECCD5EA: H5I_dec_app_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xEC5A831: H5F__close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xEC4F881: H5Fclose (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xBEF3967: Hdf5DataWriter::Close() (Hdf5DataWriter.cpp:1100) ==936744== by 0x68B0345: CardiacElectroMechanicsProblem<2u, 1u>::Solve() (CardiacElectroMechanicsProblem.cpp:889) ==936744== by 0x1382F2: TestElectroMechanicsExactSolution::TestIncompressibleSolveWithExactSolution() (TestElectroMechanicsExactSolution.hpp:212) ==936744== by 0x138852: TestDescription_TestElectroMechanicsExactSolution_TestIncompressibleSolveWithExactSolution::runTest() (TestElectroMechanicsExactSolution.cpp:30) ==936744== by 0x130B64: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==936744== by 0x134322: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==936744== by 0x134207: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==936744== by 0x1340AD: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==936744== by 0x133F6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==936744== by 0x134583: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==936744== by 0x12F100: main (TestElectroMechanicsExactSolution.cpp:18) ==936744== Address 0x15d682de is 62 bytes inside a block of size 320 alloc'd ==936744== at 0x4848899: malloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==936744== by 0xEBE4E26: H5C__flush_single_entry (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xEE243F9: H5C_apply_candidate_list (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xEE259CA: H5AC__run_sync_point (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xEE2647E: H5AC__flush_entries (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xEBC154C: H5AC_flush (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xEC59936: ??? (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xEC5A3FE: H5F__dest (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xEC5DBB2: H5F_try_close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xEC5DEFB: H5F__close_cb (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xECCD51F: H5I_dec_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xECCD5EA: H5I_dec_app_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xEC5A831: H5F__close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xEC4F881: H5Fclose (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936744== by 0xBEF3967: Hdf5DataWriter::Close() (Hdf5DataWriter.cpp:1100) ==936744== by 0x68B0345: CardiacElectroMechanicsProblem<2u, 1u>::Solve() (CardiacElectroMechanicsProblem.cpp:889) ==936744== by 0x1382F2: TestElectroMechanicsExactSolution::TestIncompressibleSolveWithExactSolution() (TestElectroMechanicsExactSolution.hpp:212) ==936744== by 0x138852: TestDescription_TestElectroMechanicsExactSolution_TestIncompressibleSolveWithExactSolution::runTest() (TestElectroMechanicsExactSolution.cpp:30) ==936744== by 0x130B64: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==936744== by 0x134322: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==936744== by 0x134207: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==936744== by 0x1340AD: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==936744== by 0x133F6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==936744== by 0x134583: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==936744== by 0x12F100: main (TestElectroMechanicsExactSolution.cpp:18) ==936744== { Memcheck:Param pwrite64(buf) fun:__libc_pwrite64 fun:pwrite fun:mca_fbtl_posix_pwritev fun:mca_common_ompio_file_write fun:mca_common_ompio_file_write_at fun:mca_io_ompio_file_write_at fun:PMPI_File_write_at obj:/usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0 fun:H5FD_write fun:H5F__accum_write fun:H5PB_write fun:H5F_block_write fun:H5C__flush_single_entry fun:H5C_apply_candidate_list fun:H5AC__run_sync_point fun:H5AC__flush_entries fun:H5AC_flush obj:/usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0 fun:H5F__dest fun:H5F_try_close fun:H5F__close_cb fun:H5I_dec_ref fun:H5I_dec_app_ref fun:H5F__close fun:H5Fclose fun:_ZN14Hdf5DataWriter5CloseEv fun:_ZN30CardiacElectroMechanicsProblemILj2ELj1EE5SolveEv fun:_ZN33TestElectroMechanicsExactSolution40TestIncompressibleSolveWithExactSolutionEv fun:_ZN90TestDescription_TestElectroMechanicsExactSolution_TestIncompressibleSolveWithExactSolution7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==936744== ==936744== FILE DESCRIPTORS: 9 open (3 std) at exit. ==936744== Open file descriptor 12: ==936744== at 0xA20522D: pipe (pipe.c:29) ==936744== by 0x13A9407D: ??? ==936744== by 0xCCDD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==936744== by 0x9A0E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936744== by 0x99A7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936744== by 0xA40DD38: PetscInitialize (pinit.c:924) ==936744== by 0x98D058B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==936744== by 0x98D05D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==936744== by 0x137C7A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==936744== by 0x13132D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==936744== by 0x134074: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==936744== by 0x133F6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==936744== by 0x134583: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==936744== by 0x12F100: main (TestElectroMechanicsExactSolution.cpp:18) ==936744== ==936744== Open file descriptor 8: /dev/shm/open_mpi.0000 ==936744== at 0xA209BCC: __open_nocancel (open64_nocancel.c:39) ==936744== by 0xA18DC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==936744== by 0x9908822: ??? ==936744== by 0x990896F: ??? ==936744== by 0xCD826DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==936744== by 0xCD82938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==936744== by 0xCD38922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==936744== by 0xCCDD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==936744== by 0x9A0E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936744== by 0x99A7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936744== by 0xA40DD38: PetscInitialize (pinit.c:924) ==936744== by 0x98D058B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==936744== by 0x98D05D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==936744== by 0x137C7A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==936744== by 0x13132D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==936744== by 0x134074: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==936744== by 0x133F6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==936744== by 0x134583: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==936744== by 0x12F100: main (TestElectroMechanicsExactSolution.cpp:18) ==936744== ==936744== Open file descriptor 111: ==936744== ==936744== ==936744== Open file descriptor 108: ==936744== ==936744== ==936744== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElectroMechanicsExactSolution_valgrind.txt ==936744== ==936744== ==936744== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==936744== ==936744== ==936744== ==936744== HEAP SUMMARY: ==936744== in use at exit: 701,166 bytes in 9,383 blocks ==936744== total heap usage: 1,183,391 allocs, 1,174,008 frees, 1,496,063,060 bytes allocated ==936744== ==936744== 552 bytes in 1 blocks are definitely lost in loss record 39 of 65 ==936744== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==936744== by 0x14362C13: ??? ==936744== by 0x1436322C: ??? ==936744== by 0x142D64B7: ??? ==936744== by 0x997415A: ompi_proc_complete_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936744== by 0x9A0EA97: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936744== by 0x99A7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936744== by 0xA40DD38: PetscInitialize (pinit.c:924) ==936744== by 0x98D058B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==936744== by 0x98D05D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==936744== by 0x137C7A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==936744== by 0x13132D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==936744== by 0x134074: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==936744== by 0x133F6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==936744== by 0x134583: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==936744== by 0x12F100: main (TestElectroMechanicsExactSolution.cpp:18) ==936744== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* fun:ompi_proc_complete_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==936744== 84,459 (136 direct, 84,323 indirect) bytes in 1 blocks are definitely lost in loss record 62 of 65 ==936744== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==936744== by 0x154D574E: ??? ==936744== by 0x154D5E0B: ??? ==936744== by 0x154D8F56: ??? ==936744== by 0x154CE65D: ??? ==936744== by 0x154CEFA3: ??? ==936744== by 0xCDEEF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==936744== by 0xCDCAAE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==936744== by 0xCD7BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==936744== by 0xCCA8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==936744== by 0x13A94F03: ??? ==936744== by 0xCCDD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==936744== by 0x9A0E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936744== by 0x99A7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936744== by 0xA40DD38: PetscInitialize (pinit.c:924) ==936744== by 0x98D058B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==936744== by 0x98D05D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==936744== by 0x137C7A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==936744== by 0x13132D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==936744== by 0x134074: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==936744== by 0x133F6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==936744== by 0x134583: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==936744== by 0x12F100: main (TestElectroMechanicsExactSolution.cpp:18) ==936744== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* obj:* obj:* obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2 fun:hwloc_topology_load fun:opal_hwloc_base_get_topology fun:orte_ess_base_proc_binding obj:* fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==936744== LEAK SUMMARY: ==936744== definitely lost: 688 bytes in 2 blocks ==936744== indirectly lost: 1,760 bytes in 16 blocks ==936744== possibly lost: 0 bytes in 0 blocks ==936744== still reachable: 1,531 bytes in 6 blocks ==936744== suppressed: 697,187 bytes in 9,359 blocks ==936744== Reachable blocks (those to which a pointer was found) are not shown. ==936744== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==936744== ==936744== Use --track-origins=yes to see where uninitialised values come from ==936744== For lists of detected and suppressed errors, rerun with: -s ==936744== ERROR SUMMARY: 11 errors from 6 contexts (suppressed: 28 from 28)