==915267== Memcheck, a memory error detector ==915267== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==915267== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==915267== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSimpleLinearParabolicSolver -malloc_debug -malloc_dump -memory_info ==915267== Parent PID: 914403 ==915267== ==915267== WARNING: pwritev(vector[...]) is an obsolete suppression line not supported in valgrind 3.15 or later. ==915267== You should replace [...] by a specific index such as [0] or [1] or [2] or similar ==915267== ==915267== Syscall param socketcall.getsockopt(optlen) points to uninitialised byte(s) ==915267== at 0x7E9079E: getsockopt_syscall (getsockopt.c:29) ==915267== by 0x7E9079E: getsockopt (getsockopt.c:94) ==915267== by 0x107D3157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==915267== by 0x107DAA1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==915267== by 0x107E1DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==915267== by 0x106E13C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==915267== by 0x1065AE4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==915267== by 0xFE19E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==915267== by 0xBCB54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==915267== by 0x8471418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==915267== by 0x840AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==915267== by 0x6448D38: PetscInitialize (pinit.c:924) ==915267== by 0x631C58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==915267== by 0x631C5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==915267== by 0x15FBB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==915267== by 0x158BAF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==915267== by 0x15C0EA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==915267== by 0x15BF8A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==915267== by 0x15C621: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==915267== by 0x156EE0: main (TestSimpleLinearParabolicSolver.cpp:19) ==915267== Address 0x1ffeffdfcc is on thread 1's stack ==915267== in frame #2, created by pmix_ptl_base_make_connection (???:) ==915267== { Memcheck:Param socketcall.getsockopt(optlen) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==915267== Syscall param socketcall.getsockopt(optlen_out) points to uninitialised byte(s) ==915267== at 0x7E9079E: getsockopt_syscall (getsockopt.c:29) ==915267== by 0x7E9079E: getsockopt (getsockopt.c:94) ==915267== by 0x107D3157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==915267== by 0x107DAA1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==915267== by 0x107E1DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==915267== by 0x106E13C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==915267== by 0x1065AE4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==915267== by 0xFE19E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==915267== by 0xBCB54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==915267== by 0x8471418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==915267== by 0x840AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==915267== by 0x6448D38: PetscInitialize (pinit.c:924) ==915267== by 0x631C58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==915267== by 0x631C5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==915267== by 0x15FBB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==915267== by 0x158BAF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==915267== by 0x15C0EA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==915267== by 0x15BF8A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==915267== by 0x15C621: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==915267== by 0x156EE0: main (TestSimpleLinearParabolicSolver.cpp:19) ==915267== Address 0x1ffeffdfcc is on thread 1's stack ==915267== in frame #2, created by pmix_ptl_base_make_connection (???:) ==915267== { Memcheck:Param socketcall.getsockopt(optlen_out) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==915267== Syscall param setsockopt(optlen) contains uninitialised byte(s) ==915267== at 0x7E90C7E: setsockopt_syscall (setsockopt.c:29) ==915267== by 0x7E90C7E: setsockopt (setsockopt.c:95) ==915267== by 0x107DABA9: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==915267== by 0x107E1DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==915267== by 0x106E13C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==915267== by 0x1065AE4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==915267== by 0xFE19E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==915267== by 0xBCB54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==915267== by 0x8471418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==915267== by 0x840AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==915267== by 0x6448D38: PetscInitialize (pinit.c:924) ==915267== by 0x631C58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==915267== by 0x631C5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==915267== by 0x15FBB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==915267== by 0x158BAF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==915267== by 0x15C0EA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==915267== by 0x15BF8A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==915267== by 0x15C621: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==915267== by 0x156EE0: main (TestSimpleLinearParabolicSolver.cpp:19) ==915267== { Memcheck:Param setsockopt(optlen) fun:setsockopt_syscall fun:setsockopt fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==915267== Syscall param pwrite64(buf) points to uninitialised byte(s) ==915267== at 0x7E7B9EF: __libc_pwrite64 (pwrite64.c:25) ==915267== by 0x7E7B9EF: pwrite (pwrite64.c:23) ==915267== by 0x13C509D2: mca_fbtl_posix_pwritev (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_fbtl_posix.so) ==915267== by 0x13C60419: mca_common_ompio_file_write (in /usr/lib/x86_64-linux-gnu/libmca_common_ompio.so.41.29.2) ==915267== by 0x13C6079A: mca_common_ompio_file_write_at (in /usr/lib/x86_64-linux-gnu/libmca_common_ompio.so.41.29.2) ==915267== by 0x13B4B89A: mca_io_ompio_file_write_at (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_io_ompio.so) ==915267== by 0x83FE6A7: PMPI_File_write_at (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==915267== by 0x829BFEB: ??? (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x80DB4ED: H5FD_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x80BE313: H5F__accum_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x81B9442: H5PB_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x80C5DEA: H5F_block_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x804FE98: H5C__flush_single_entry (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x828F3F9: H5C_apply_candidate_list (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x82909CA: H5AC__run_sync_point (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x829147E: H5AC__flush_entries (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x802C54C: H5AC_flush (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x80C4936: ??? (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x80C53FE: H5F__dest (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x80C8BB2: H5F_try_close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x80C8EFB: H5F__close_cb (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x813851F: H5I_dec_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x81385EA: H5I_dec_app_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x80C5831: H5F__close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x80BA881: H5Fclose (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x624B967: Hdf5DataWriter::Close() (Hdf5DataWriter.cpp:1100) ==915267== by 0x6246647: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:273) ==915267== by 0x62466ED: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:283) ==915267== by 0x16F5A1: AbstractDynamicLinearPdeSolver<2u, 2u, 1u>::Solve() (AbstractDynamicLinearPdeSolver.hpp:474) ==915267== by 0x1639A4: TestSimpleLinearParabolicSolver::TestSimpleLinearParabolicSolver2DZeroDirich() (TestSimpleLinearParabolicSolver.hpp:386) ==915267== by 0x16BF9E: TestDescription_TestSimpleLinearParabolicSolver_TestSimpleLinearParabolicSolver2DZeroDirich::runTest() (TestSimpleLinearParabolicSolver.cpp:49) ==915267== by 0x1581AA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==915267== by 0x15C398: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==915267== by 0x15C27D: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==915267== by 0x15C123: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==915267== by 0x15BF8A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==915267== by 0x15C621: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==915267== by 0x156EE0: main (TestSimpleLinearParabolicSolver.cpp:19) ==915267== Address 0x11d1eed2 is 66 bytes inside a block of size 320 alloc'd ==915267== at 0x4848899: malloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==915267== by 0x804FE26: H5C__flush_single_entry (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x828F3F9: H5C_apply_candidate_list (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x82909CA: H5AC__run_sync_point (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x829147E: H5AC__flush_entries (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x802C54C: H5AC_flush (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x80C4936: ??? (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x80C53FE: H5F__dest (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x80C8BB2: H5F_try_close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x80C8EFB: H5F__close_cb (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x813851F: H5I_dec_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x81385EA: H5I_dec_app_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x80C5831: H5F__close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x80BA881: H5Fclose (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==915267== by 0x624B967: Hdf5DataWriter::Close() (Hdf5DataWriter.cpp:1100) ==915267== by 0x6246647: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:273) ==915267== by 0x62466ED: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:283) ==915267== by 0x16F5A1: AbstractDynamicLinearPdeSolver<2u, 2u, 1u>::Solve() (AbstractDynamicLinearPdeSolver.hpp:474) ==915267== by 0x1639A4: TestSimpleLinearParabolicSolver::TestSimpleLinearParabolicSolver2DZeroDirich() (TestSimpleLinearParabolicSolver.hpp:386) ==915267== by 0x16BF9E: TestDescription_TestSimpleLinearParabolicSolver_TestSimpleLinearParabolicSolver2DZeroDirich::runTest() (TestSimpleLinearParabolicSolver.cpp:49) ==915267== by 0x1581AA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==915267== by 0x15C398: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==915267== by 0x15C27D: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==915267== by 0x15C123: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==915267== by 0x15BF8A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==915267== by 0x15C621: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==915267== by 0x156EE0: main (TestSimpleLinearParabolicSolver.cpp:19) ==915267== { Memcheck:Param pwrite64(buf) fun:__libc_pwrite64 fun:pwrite fun:mca_fbtl_posix_pwritev fun:mca_common_ompio_file_write fun:mca_common_ompio_file_write_at fun:mca_io_ompio_file_write_at fun:PMPI_File_write_at obj:/usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0 fun:H5FD_write fun:H5F__accum_write fun:H5PB_write fun:H5F_block_write fun:H5C__flush_single_entry fun:H5C_apply_candidate_list fun:H5AC__run_sync_point fun:H5AC__flush_entries fun:H5AC_flush obj:/usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0 fun:H5F__dest fun:H5F_try_close fun:H5F__close_cb fun:H5I_dec_ref fun:H5I_dec_app_ref fun:H5F__close fun:H5Fclose fun:_ZN14Hdf5DataWriter5CloseEv fun:_ZN14Hdf5DataWriterD1Ev fun:_ZN14Hdf5DataWriterD0Ev fun:_ZN30AbstractDynamicLinearPdeSolverILj2ELj2ELj1EE5SolveEv fun:_ZN31TestSimpleLinearParabolicSolver43TestSimpleLinearParabolicSolver2DZeroDirichEv fun:_ZN91TestDescription_TestSimpleLinearParabolicSolver_TestSimpleLinearParabolicSolver2DZeroDirich7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==915267== ==915267== FILE DESCRIPTORS: 9 open (3 std) at exit. ==915267== Open file descriptor 12: ==915267== at 0x7E7E22D: pipe (pipe.c:29) ==915267== by 0xFE1A07D: ??? ==915267== by 0xBCB54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==915267== by 0x8471418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==915267== by 0x840AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==915267== by 0x6448D38: PetscInitialize (pinit.c:924) ==915267== by 0x631C58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==915267== by 0x631C5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==915267== by 0x15FBB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==915267== by 0x158BAF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==915267== by 0x15C0EA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==915267== by 0x15BF8A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==915267== by 0x15C621: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==915267== by 0x156EE0: main (TestSimpleLinearParabolicSolver.cpp:19) ==915267== ==915267== Open file descriptor 8: /dev/shm/open_mpi.0000 ==915267== at 0x7E82BCC: __open_nocancel (open64_nocancel.c:39) ==915267== by 0x7E06C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==915267== by 0x76D2822: ??? ==915267== by 0x76D296F: ??? ==915267== by 0xBD5A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==915267== by 0xBD5A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==915267== by 0xBD10922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==915267== by 0xBCB52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==915267== by 0x8471418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==915267== by 0x840AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==915267== by 0x6448D38: PetscInitialize (pinit.c:924) ==915267== by 0x631C58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==915267== by 0x631C5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==915267== by 0x15FBB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==915267== by 0x158BAF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==915267== by 0x15C0EA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==915267== by 0x15BF8A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==915267== by 0x15C621: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==915267== by 0x156EE0: main (TestSimpleLinearParabolicSolver.cpp:19) ==915267== ==915267== Open file descriptor 111: ==915267== ==915267== ==915267== Open file descriptor 108: ==915267== ==915267== ==915267== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleLinearParabolicSolver_valgrind.txt ==915267== ==915267== ==915267== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==915267== ==915267== ==915267== ==915267== HEAP SUMMARY: ==915267== in use at exit: 701,154 bytes in 9,387 blocks ==915267== total heap usage: 371,613 allocs, 362,226 frees, 1,444,103,322 bytes allocated ==915267== ==915267== 552 bytes in 1 blocks are definitely lost in loss record 43 of 69 ==915267== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==915267== by 0x106E8C13: ??? ==915267== by 0x106E922C: ??? ==915267== by 0x1065C4B7: ??? ==915267== by 0x83D715A: ompi_proc_complete_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==915267== by 0x8471A97: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==915267== by 0x840AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==915267== by 0x6448D38: PetscInitialize (pinit.c:924) ==915267== by 0x631C58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==915267== by 0x631C5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==915267== by 0x15FBB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==915267== by 0x158BAF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==915267== by 0x15C0EA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==915267== by 0x15BF8A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==915267== by 0x15C621: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==915267== by 0x156EE0: main (TestSimpleLinearParabolicSolver.cpp:19) ==915267== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* fun:ompi_proc_complete_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==915267== 84,459 (136 direct, 84,323 indirect) bytes in 1 blocks are definitely lost in loss record 66 of 69 ==915267== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==915267== by 0x1185B74E: ??? ==915267== by 0x1185BE0B: ??? ==915267== by 0x1185EF56: ??? ==915267== by 0x1185465D: ??? ==915267== by 0x11854FA3: ??? ==915267== by 0xBDC6F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==915267== by 0xBDA2AE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==915267== by 0xBD53CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==915267== by 0xBC80EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==915267== by 0xFE1AF03: ??? ==915267== by 0xBCB54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==915267== by 0x8471418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==915267== by 0x840AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==915267== by 0x6448D38: PetscInitialize (pinit.c:924) ==915267== by 0x631C58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==915267== by 0x631C5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==915267== by 0x15FBB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==915267== by 0x158BAF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==915267== by 0x15C0EA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==915267== by 0x15BF8A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==915267== by 0x15C621: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==915267== by 0x156EE0: main (TestSimpleLinearParabolicSolver.cpp:19) ==915267== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* obj:* obj:* obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2 fun:hwloc_topology_load fun:opal_hwloc_base_get_topology fun:orte_ess_base_proc_binding obj:* fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==915267== LEAK SUMMARY: ==915267== definitely lost: 688 bytes in 2 blocks ==915267== indirectly lost: 1,760 bytes in 16 blocks ==915267== possibly lost: 0 bytes in 0 blocks ==915267== still reachable: 1,531 bytes in 6 blocks ==915267== suppressed: 697,175 bytes in 9,363 blocks ==915267== Reachable blocks (those to which a pointer was found) are not shown. ==915267== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==915267== ==915267== Use --track-origins=yes to see where uninitialised values come from ==915267== For lists of detected and suppressed errors, rerun with: -s ==915267== ERROR SUMMARY: 11 errors from 6 contexts (suppressed: 32 from 32)