==936914== Memcheck, a memory error detector ==936914== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==936914== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==936914== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestVoltageInterpolaterOntoMechanicsMesh -malloc_debug -malloc_dump -memory_info ==936914== Parent PID: 914403 ==936914== ==936914== WARNING: pwritev(vector[...]) is an obsolete suppression line not supported in valgrind 3.15 or later. ==936914== You should replace [...] by a specific index such as [0] or [1] or [2] or similar ==936914== ==936914== Syscall param socketcall.getsockopt(optlen) points to uninitialised byte(s) ==936914== at 0xB01979E: getsockopt_syscall (getsockopt.c:29) ==936914== by 0xB01979E: getsockopt (getsockopt.c:94) ==936914== by 0x1444F157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==936914== by 0x14456A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==936914== by 0x1445DDF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==936914== by 0x1435D3C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==936914== by 0x142D6E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==936914== by 0x13A95E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==936914== by 0xF2994CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==936914== by 0xB39A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936914== by 0xB333D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936914== by 0x969ED38: PetscInitialize (pinit.c:924) ==936914== by 0x957258B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==936914== by 0x95725D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==936914== by 0x128164: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==936914== by 0x12245D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==936914== by 0x124BB4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==936914== by 0x124AB0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==936914== by 0x1250C3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==936914== by 0x120C60: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) ==936914== Address 0x1ffeffdfbc is on thread 1's stack ==936914== in frame #2, created by pmix_ptl_base_make_connection (???:) ==936914== { Memcheck:Param socketcall.getsockopt(optlen) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==936914== Syscall param socketcall.getsockopt(optlen_out) points to uninitialised byte(s) ==936914== at 0xB01979E: getsockopt_syscall (getsockopt.c:29) ==936914== by 0xB01979E: getsockopt (getsockopt.c:94) ==936914== by 0x1444F157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==936914== by 0x14456A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==936914== by 0x1445DDF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==936914== by 0x1435D3C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==936914== by 0x142D6E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==936914== by 0x13A95E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==936914== by 0xF2994CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==936914== by 0xB39A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936914== by 0xB333D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936914== by 0x969ED38: PetscInitialize (pinit.c:924) ==936914== by 0x957258B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==936914== by 0x95725D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==936914== by 0x128164: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==936914== by 0x12245D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==936914== by 0x124BB4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==936914== by 0x124AB0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==936914== by 0x1250C3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==936914== by 0x120C60: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) ==936914== Address 0x1ffeffdfbc is on thread 1's stack ==936914== in frame #2, created by pmix_ptl_base_make_connection (???:) ==936914== { Memcheck:Param socketcall.getsockopt(optlen_out) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==936914== Syscall param setsockopt(optlen) contains uninitialised byte(s) ==936914== at 0xB019C7E: setsockopt_syscall (setsockopt.c:29) ==936914== by 0xB019C7E: setsockopt (setsockopt.c:95) ==936914== by 0x14456BA9: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==936914== by 0x1445DDF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==936914== by 0x1435D3C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==936914== by 0x142D6E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==936914== by 0x13A95E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==936914== by 0xF2994CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==936914== by 0xB39A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936914== by 0xB333D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936914== by 0x969ED38: PetscInitialize (pinit.c:924) ==936914== by 0x957258B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==936914== by 0x95725D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==936914== by 0x128164: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==936914== by 0x12245D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==936914== by 0x124BB4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==936914== by 0x124AB0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==936914== by 0x1250C3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==936914== by 0x120C60: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) ==936914== { Memcheck:Param setsockopt(optlen) fun:setsockopt_syscall fun:setsockopt fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==936914== Syscall param pwrite64(buf) points to uninitialised byte(s) ==936914== at 0xB0049EF: __libc_pwrite64 (pwrite64.c:25) ==936914== by 0xB0049EF: pwrite (pwrite64.c:23) ==936914== by 0x177A29D2: mca_fbtl_posix_pwritev (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_fbtl_posix.so) ==936914== by 0x17782419: mca_common_ompio_file_write (in /usr/lib/x86_64-linux-gnu/libmca_common_ompio.so.41.29.2) ==936914== by 0x1778279A: mca_common_ompio_file_write_at (in /usr/lib/x86_64-linux-gnu/libmca_common_ompio.so.41.29.2) ==936914== by 0x1775189A: mca_io_ompio_file_write_at (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_io_ompio.so) ==936914== by 0xB3276A7: PMPI_File_write_at (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936914== by 0xCEF1FEB: ??? (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCD314ED: H5FD_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCD14313: H5F__accum_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCE0F442: H5PB_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCD1BDEA: H5F_block_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCCA5E98: H5C__flush_single_entry (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCEE53F9: H5C_apply_candidate_list (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCEE69CA: H5AC__run_sync_point (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCEE747E: H5AC__flush_entries (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCC8254C: H5AC_flush (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCD1A936: ??? (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCD1B3FE: H5F__dest (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCD1EBB2: H5F_try_close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCD1EEFB: H5F__close_cb (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCD8E51F: H5I_dec_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCD8E5EA: H5I_dec_app_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCD1B831: H5F__close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCD10881: H5Fclose (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0x94A1967: Hdf5DataWriter::Close() (Hdf5DataWriter.cpp:1100) ==936914== by 0x949C647: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:273) ==936914== by 0x949C6ED: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:283) ==936914== by 0x6767CFB: VoltageInterpolaterOntoMechanicsMesh<1u>::VoltageInterpolaterOntoMechanicsMesh(TetrahedralMesh<1u, 1u>&, QuadraticMesh<1u>&, std::vector, std::allocator >, std::allocator, std::allocator > > >&, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >) (VoltageInterpolaterOntoMechanicsMesh.cpp:133) ==936914== by 0x1286E3: TestVoltageInterpolaterOntoMechanicsMesh::TestWith1dData() (TestVoltageInterpolaterOntoMechanicsMesh.hpp:87) ==936914== by 0x12B6D2: TestDescription_TestVoltageInterpolaterOntoMechanicsMesh_TestWith1dData::runTest() (TestVoltageInterpolaterOntoMechanicsMesh.cpp:30) ==936914== by 0x121C94: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==936914== by 0x124E62: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==936914== by 0x124D47: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==936914== by 0x124BED: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==936914== by 0x124AB0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==936914== by 0x1250C3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==936914== by 0x120C60: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) ==936914== Address 0x16c1ddbe is 62 bytes inside a block of size 320 alloc'd ==936914== at 0x4848899: malloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==936914== by 0xCCA5E26: H5C__flush_single_entry (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCEE53F9: H5C_apply_candidate_list (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCEE69CA: H5AC__run_sync_point (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCEE747E: H5AC__flush_entries (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCC8254C: H5AC_flush (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCD1A936: ??? (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCD1B3FE: H5F__dest (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCD1EBB2: H5F_try_close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCD1EEFB: H5F__close_cb (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCD8E51F: H5I_dec_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCD8E5EA: H5I_dec_app_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCD1B831: H5F__close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0xCD10881: H5Fclose (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==936914== by 0x94A1967: Hdf5DataWriter::Close() (Hdf5DataWriter.cpp:1100) ==936914== by 0x949C647: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:273) ==936914== by 0x949C6ED: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:283) ==936914== by 0x6767CFB: VoltageInterpolaterOntoMechanicsMesh<1u>::VoltageInterpolaterOntoMechanicsMesh(TetrahedralMesh<1u, 1u>&, QuadraticMesh<1u>&, std::vector, std::allocator >, std::allocator, std::allocator > > >&, std::__cxx11::basic_string, std::allocator >, std::__cxx11::basic_string, std::allocator >) (VoltageInterpolaterOntoMechanicsMesh.cpp:133) ==936914== by 0x1286E3: TestVoltageInterpolaterOntoMechanicsMesh::TestWith1dData() (TestVoltageInterpolaterOntoMechanicsMesh.hpp:87) ==936914== by 0x12B6D2: TestDescription_TestVoltageInterpolaterOntoMechanicsMesh_TestWith1dData::runTest() (TestVoltageInterpolaterOntoMechanicsMesh.cpp:30) ==936914== by 0x121C94: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==936914== by 0x124E62: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==936914== by 0x124D47: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==936914== by 0x124BED: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==936914== by 0x124AB0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==936914== by 0x1250C3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==936914== by 0x120C60: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) ==936914== { Memcheck:Param pwrite64(buf) fun:__libc_pwrite64 fun:pwrite fun:mca_fbtl_posix_pwritev fun:mca_common_ompio_file_write fun:mca_common_ompio_file_write_at fun:mca_io_ompio_file_write_at fun:PMPI_File_write_at obj:/usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0 fun:H5FD_write fun:H5F__accum_write fun:H5PB_write fun:H5F_block_write fun:H5C__flush_single_entry fun:H5C_apply_candidate_list fun:H5AC__run_sync_point fun:H5AC__flush_entries fun:H5AC_flush obj:/usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0 fun:H5F__dest fun:H5F_try_close fun:H5F__close_cb fun:H5I_dec_ref fun:H5I_dec_app_ref fun:H5F__close fun:H5Fclose fun:_ZN14Hdf5DataWriter5CloseEv fun:_ZN14Hdf5DataWriterD1Ev fun:_ZN14Hdf5DataWriterD0Ev fun:_ZN36VoltageInterpolaterOntoMechanicsMeshILj1EEC1ER15TetrahedralMeshILj1ELj1EER13QuadraticMeshILj1EERSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaISD_EESD_SD_ fun:_ZN40TestVoltageInterpolaterOntoMechanicsMesh14TestWith1dDataEv fun:_ZN71TestDescription_TestVoltageInterpolaterOntoMechanicsMesh_TestWith1dData7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==936914== ==936914== FILE DESCRIPTORS: 9 open (3 std) at exit. ==936914== Open file descriptor 12: ==936914== at 0xB00722D: pipe (pipe.c:29) ==936914== by 0x13A9607D: ??? ==936914== by 0xF2994CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==936914== by 0xB39A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936914== by 0xB333D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936914== by 0x969ED38: PetscInitialize (pinit.c:924) ==936914== by 0x957258B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==936914== by 0x95725D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==936914== by 0x128164: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==936914== by 0x12245D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==936914== by 0x124BB4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==936914== by 0x124AB0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==936914== by 0x1250C3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==936914== by 0x120C60: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) ==936914== ==936914== Open file descriptor 8: /dev/shm/open_mpi.0000 ==936914== at 0xB00BBCC: __open_nocancel (open64_nocancel.c:39) ==936914== by 0xAF8FC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==936914== by 0xA928822: ??? ==936914== by 0xA92896F: ??? ==936914== by 0xF33E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==936914== by 0xF33E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==936914== by 0xF2F4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==936914== by 0xF2992DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==936914== by 0xB39A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936914== by 0xB333D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936914== by 0x969ED38: PetscInitialize (pinit.c:924) ==936914== by 0x957258B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==936914== by 0x95725D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==936914== by 0x128164: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==936914== by 0x12245D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==936914== by 0x124BB4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==936914== by 0x124AB0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==936914== by 0x1250C3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==936914== by 0x120C60: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) ==936914== ==936914== Open file descriptor 111: ==936914== ==936914== ==936914== Open file descriptor 108: ==936914== ==936914== ==936914== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt ==936914== ==936914== ==936914== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==936914== ==936914== ==936914== ==936914== HEAP SUMMARY: ==936914== in use at exit: 701,234 bytes in 9,387 blocks ==936914== total heap usage: 547,990 allocs, 538,603 frees, 1,537,718,073 bytes allocated ==936914== ==936914== 552 bytes in 1 blocks are definitely lost in loss record 43 of 69 ==936914== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==936914== by 0x14364C13: ??? ==936914== by 0x1436522C: ??? ==936914== by 0x142D84B7: ??? ==936914== by 0xB30015A: ompi_proc_complete_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936914== by 0xB39AA97: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936914== by 0xB333D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936914== by 0x969ED38: PetscInitialize (pinit.c:924) ==936914== by 0x957258B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==936914== by 0x95725D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==936914== by 0x128164: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==936914== by 0x12245D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==936914== by 0x124BB4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==936914== by 0x124AB0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==936914== by 0x1250C3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==936914== by 0x120C60: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) ==936914== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* fun:ompi_proc_complete_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==936914== 84,415 (136 direct, 84,279 indirect) bytes in 1 blocks are definitely lost in loss record 66 of 69 ==936914== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==936914== by 0x154D774E: ??? ==936914== by 0x154D7E0B: ??? ==936914== by 0x154DAF56: ??? ==936914== by 0x154D065D: ??? ==936914== by 0x154D0FA3: ??? ==936914== by 0xF3AAF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==936914== by 0xF386AE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==936914== by 0xF337CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==936914== by 0xF264EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==936914== by 0x13A96F03: ??? ==936914== by 0xF2994CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==936914== by 0xB39A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936914== by 0xB333D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==936914== by 0x969ED38: PetscInitialize (pinit.c:924) ==936914== by 0x957258B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==936914== by 0x95725D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==936914== by 0x128164: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==936914== by 0x12245D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==936914== by 0x124BB4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==936914== by 0x124AB0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==936914== by 0x1250C3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==936914== by 0x120C60: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) ==936914== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* obj:* obj:* obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2 fun:hwloc_topology_load fun:opal_hwloc_base_get_topology fun:orte_ess_base_proc_binding obj:* fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==936914== LEAK SUMMARY: ==936914== definitely lost: 688 bytes in 2 blocks ==936914== indirectly lost: 1,760 bytes in 16 blocks ==936914== possibly lost: 0 bytes in 0 blocks ==936914== still reachable: 1,531 bytes in 6 blocks ==936914== suppressed: 697,255 bytes in 9,363 blocks ==936914== Reachable blocks (those to which a pointer was found) are not shown. ==936914== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==936914== ==936914== Use --track-origins=yes to see where uninitialised values come from ==936914== For lists of detected and suppressed errors, rerun with: -s ==936914== ERROR SUMMARY: 14 errors from 6 contexts (suppressed: 32 from 32)