==1979193== Memcheck, a memory error detector
==1979193== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==1979193== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==1979193== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacSimulation -malloc_debug -malloc_dump -memory_info
==1979193== Parent PID: 1956552
==1979193== 
==1979193== WARNING: pwritev(vector[...]) is an obsolete suppression line not supported in valgrind 3.15 or later.
==1979193== You should replace [...] by a specific index such as [0] or [1] or [2] or similar
==1979193== 
==1979193== Syscall param socketcall.getsockopt(optlen) points to uninitialised byte(s)
==1979193==    at 0x898D79E: getsockopt_syscall (getsockopt.c:29)
==1979193==    by 0x898D79E: getsockopt (getsockopt.c:94)
==1979193==    by 0x1467C157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==1979193==    by 0x14683A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==1979193==    by 0x1468ADF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==1979193==    by 0x1458A3C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==1979193==    by 0x14503E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so)
==1979193==    by 0x13CC2E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so)
==1979193==    by 0xE8064CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==1979193==    by 0xA08E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1979193==    by 0xA027D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1979193==    by 0x8D1ED38: PetscInitialize (pinit.c:924)
==1979193==    by 0x826658B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==1979193==    by 0x82665D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==1979193==    by 0x12AA12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==1979193==    by 0x123ACF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==1979193==    by 0x127372: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==1979193==    by 0x127212: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1979193==    by 0x1278A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1979193==    by 0x121E00: main (TestCardiacSimulation.cpp:19)
==1979193==  Address 0x1ffeffdfac is on thread 1's stack
==1979193==  in frame #2, created by pmix_ptl_base_make_connection (???:)
==1979193== 
{
   <insert_a_suppression_name_here>
   Memcheck:Param
   socketcall.getsockopt(optlen)
   fun:getsockopt_syscall
   fun:getsockopt
   fun:pmix_ptl_base_set_timeout
   fun:pmix_ptl_base_make_connection
   obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2
   fun:PMIx_Init
   fun:ext3x_client_init
   obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so
   fun:orte_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==1979193== Syscall param socketcall.getsockopt(optlen_out) points to uninitialised byte(s)
==1979193==    at 0x898D79E: getsockopt_syscall (getsockopt.c:29)
==1979193==    by 0x898D79E: getsockopt (getsockopt.c:94)
==1979193==    by 0x1467C157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==1979193==    by 0x14683A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==1979193==    by 0x1468ADF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==1979193==    by 0x1458A3C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==1979193==    by 0x14503E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so)
==1979193==    by 0x13CC2E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so)
==1979193==    by 0xE8064CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==1979193==    by 0xA08E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1979193==    by 0xA027D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1979193==    by 0x8D1ED38: PetscInitialize (pinit.c:924)
==1979193==    by 0x826658B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==1979193==    by 0x82665D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==1979193==    by 0x12AA12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==1979193==    by 0x123ACF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==1979193==    by 0x127372: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==1979193==    by 0x127212: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1979193==    by 0x1278A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1979193==    by 0x121E00: main (TestCardiacSimulation.cpp:19)
==1979193==  Address 0x1ffeffdfac is on thread 1's stack
==1979193==  in frame #2, created by pmix_ptl_base_make_connection (???:)
==1979193== 
{
   <insert_a_suppression_name_here>
   Memcheck:Param
   socketcall.getsockopt(optlen_out)
   fun:getsockopt_syscall
   fun:getsockopt
   fun:pmix_ptl_base_set_timeout
   fun:pmix_ptl_base_make_connection
   obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2
   fun:PMIx_Init
   fun:ext3x_client_init
   obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so
   fun:orte_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==1979193== Syscall param setsockopt(optlen) contains uninitialised byte(s)
==1979193==    at 0x898DC7E: setsockopt_syscall (setsockopt.c:29)
==1979193==    by 0x898DC7E: setsockopt (setsockopt.c:95)
==1979193==    by 0x14683BA9: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==1979193==    by 0x1468ADF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==1979193==    by 0x1458A3C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==1979193==    by 0x14503E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so)
==1979193==    by 0x13CC2E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so)
==1979193==    by 0xE8064CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==1979193==    by 0xA08E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1979193==    by 0xA027D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1979193==    by 0x8D1ED38: PetscInitialize (pinit.c:924)
==1979193==    by 0x826658B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==1979193==    by 0x82665D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==1979193==    by 0x12AA12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==1979193==    by 0x123ACF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==1979193==    by 0x127372: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==1979193==    by 0x127212: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1979193==    by 0x1278A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1979193==    by 0x121E00: main (TestCardiacSimulation.cpp:19)
==1979193== 
{
   <insert_a_suppression_name_here>
   Memcheck:Param
   setsockopt(optlen)
   fun:setsockopt_syscall
   fun:setsockopt
   fun:pmix_ptl_base_make_connection
   obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2
   fun:PMIx_Init
   fun:ext3x_client_init
   obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so
   fun:orte_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==1979193== Syscall param pwrite64(buf) points to uninitialised byte(s)
==1979193==    at 0x89789EF: __libc_pwrite64 (pwrite64.c:25)
==1979193==    by 0x89789EF: pwrite (pwrite64.c:23)
==1979193==    by 0x17AF99D2: mca_fbtl_posix_pwritev (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_fbtl_posix.so)
==1979193==    by 0x17B09419: mca_common_ompio_file_write (in /usr/lib/x86_64-linux-gnu/libmca_common_ompio.so.41.29.2)
==1979193==    by 0x17B0979A: mca_common_ompio_file_write_at (in /usr/lib/x86_64-linux-gnu/libmca_common_ompio.so.41.29.2)
==1979193==    by 0x175F489A: mca_io_ompio_file_write_at (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_io_ompio.so)
==1979193==    by 0xA01B6A7: PMPI_File_write_at (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1979193==    by 0xC44BFEB: ??? (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC28B4ED: H5FD_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC26E313: H5F__accum_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC369442: H5PB_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC275DEA: H5F_block_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC1FFE98: H5C__flush_single_entry (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC43F3F9: H5C_apply_candidate_list (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC4409CA: H5AC__run_sync_point (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC44147E: H5AC__flush_entries (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC1DC54C: H5AC_flush (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC274936: ??? (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC2753FE: H5F__dest (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC278BB2: H5F_try_close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC278EFB: H5F__close_cb (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC2E851F: H5I_dec_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC2E85EA: H5I_dec_app_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC275831: H5F__close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC26A881: H5Fclose (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0x8193967: Hdf5DataWriter::Close() (Hdf5DataWriter.cpp:1100)
==1979193==    by 0x818E647: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:273)
==1979193==    by 0x818E6ED: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:283)
==1979193==    by 0x6858337: AbstractCardiacProblem<1u, 1u, 1u>::CloseFilesAndPostProcess() (AbstractCardiacProblem.cpp:597)
==1979193==    by 0x6857ED7: AbstractCardiacProblem<1u, 1u, 1u>::Solve() (AbstractCardiacProblem.cpp:582)
==1979193==    by 0x69CDAB2: void CardiacSimulation::CreateAndRun<MonodomainProblem<1u, 1u>, 1u>() (CardiacSimulation.hpp:136)
==1979193==    by 0x69C8899: CardiacSimulation::Run() (CardiacSimulation.cpp:178)
==1979193==    by 0x69C8174: CardiacSimulation::CardiacSimulation(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, bool) (CardiacSimulation.cpp:106)
==1979193==    by 0x12AB87: TestCardiacSimulation::TestMono1dSmall() (TestCardiacSimulation.hpp:78)
==1979193==    by 0x13CD76: TestDescription_TestCardiacSimulation_TestMono1dSmall::runTest() (TestCardiacSimulation.cpp:31)
==1979193==    by 0x1230CA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==1979193==    by 0x127620: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==1979193==    by 0x127505: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==1979193==    by 0x1273AB: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==1979193==    by 0x127212: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1979193==    by 0x1278A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1979193==    by 0x121E00: main (TestCardiacSimulation.cpp:19)
==1979193==  Address 0x164fd75e is 62 bytes inside a block of size 320 alloc'd
==1979193==    at 0x4848899: malloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==1979193==    by 0xC1FFE26: H5C__flush_single_entry (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC43F3F9: H5C_apply_candidate_list (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC4409CA: H5AC__run_sync_point (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC44147E: H5AC__flush_entries (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC1DC54C: H5AC_flush (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC274936: ??? (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC2753FE: H5F__dest (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC278BB2: H5F_try_close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC278EFB: H5F__close_cb (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC2E851F: H5I_dec_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC2E85EA: H5I_dec_app_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC275831: H5F__close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0xC26A881: H5Fclose (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==1979193==    by 0x8193967: Hdf5DataWriter::Close() (Hdf5DataWriter.cpp:1100)
==1979193==    by 0x818E647: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:273)
==1979193==    by 0x818E6ED: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:283)
==1979193==    by 0x6858337: AbstractCardiacProblem<1u, 1u, 1u>::CloseFilesAndPostProcess() (AbstractCardiacProblem.cpp:597)
==1979193==    by 0x6857ED7: AbstractCardiacProblem<1u, 1u, 1u>::Solve() (AbstractCardiacProblem.cpp:582)
==1979193==    by 0x69CDAB2: void CardiacSimulation::CreateAndRun<MonodomainProblem<1u, 1u>, 1u>() (CardiacSimulation.hpp:136)
==1979193==    by 0x69C8899: CardiacSimulation::Run() (CardiacSimulation.cpp:178)
==1979193==    by 0x69C8174: CardiacSimulation::CardiacSimulation(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, bool) (CardiacSimulation.cpp:106)
==1979193==    by 0x12AB87: TestCardiacSimulation::TestMono1dSmall() (TestCardiacSimulation.hpp:78)
==1979193==    by 0x13CD76: TestDescription_TestCardiacSimulation_TestMono1dSmall::runTest() (TestCardiacSimulation.cpp:31)
==1979193==    by 0x1230CA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==1979193==    by 0x127620: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==1979193==    by 0x127505: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==1979193==    by 0x1273AB: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==1979193==    by 0x127212: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1979193==    by 0x1278A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1979193==    by 0x121E00: main (TestCardiacSimulation.cpp:19)
==1979193== 
{
   <insert_a_suppression_name_here>
   Memcheck:Param
   pwrite64(buf)
   fun:__libc_pwrite64
   fun:pwrite
   fun:mca_fbtl_posix_pwritev
   fun:mca_common_ompio_file_write
   fun:mca_common_ompio_file_write_at
   fun:mca_io_ompio_file_write_at
   fun:PMPI_File_write_at
   obj:/usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0
   fun:H5FD_write
   fun:H5F__accum_write
   fun:H5PB_write
   fun:H5F_block_write
   fun:H5C__flush_single_entry
   fun:H5C_apply_candidate_list
   fun:H5AC__run_sync_point
   fun:H5AC__flush_entries
   fun:H5AC_flush
   obj:/usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0
   fun:H5F__dest
   fun:H5F_try_close
   fun:H5F__close_cb
   fun:H5I_dec_ref
   fun:H5I_dec_app_ref
   fun:H5F__close
   fun:H5Fclose
   fun:_ZN14Hdf5DataWriter5CloseEv
   fun:_ZN14Hdf5DataWriterD1Ev
   fun:_ZN14Hdf5DataWriterD0Ev
   fun:_ZN22AbstractCardiacProblemILj1ELj1ELj1EE24CloseFilesAndPostProcessEv
   fun:_ZN22AbstractCardiacProblemILj1ELj1ELj1EE5SolveEv
   fun:_ZN17CardiacSimulation12CreateAndRunI17MonodomainProblemILj1ELj1EELj1EEEvv
   fun:_ZN17CardiacSimulation3RunEv
   fun:_ZN17CardiacSimulationC1ENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEbb
   fun:_ZN21TestCardiacSimulation15TestMono1dSmallEv
   fun:_ZN53TestDescription_TestCardiacSimulation_TestMono1dSmall7runTestEv
   fun:_ZN7CxxTest19RealTestDescription3runEv
   fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE
   fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==1979193== 
==1979193== FILE DESCRIPTORS: 9 open (3 std) at exit.
==1979193== Open file descriptor 12:
==1979193==    at 0x897B22D: pipe (pipe.c:29)
==1979193==    by 0x13CC307D: ???
==1979193==    by 0xE8064CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==1979193==    by 0xA08E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1979193==    by 0xA027D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1979193==    by 0x8D1ED38: PetscInitialize (pinit.c:924)
==1979193==    by 0x826658B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==1979193==    by 0x82665D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==1979193==    by 0x12AA12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==1979193==    by 0x123ACF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==1979193==    by 0x127372: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==1979193==    by 0x127212: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1979193==    by 0x1278A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1979193==    by 0x121E00: main (TestCardiacSimulation.cpp:19)
==1979193== 
==1979193== Open file descriptor 8: /dev/shm/open_mpi.0000
==1979193==    at 0x897FBCC: __open_nocancel (open64_nocancel.c:39)
==1979193==    by 0x8903C4F: shm_open@@GLIBC_2.34 (shm_open.c:40)
==1979193==    by 0x829E822: ???
==1979193==    by 0x829E96F: ???
==1979193==    by 0xE8AB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==1979193==    by 0xE8AB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==1979193==    by 0xE861922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==1979193==    by 0xE8062DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==1979193==    by 0xA08E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1979193==    by 0xA027D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1979193==    by 0x8D1ED38: PetscInitialize (pinit.c:924)
==1979193==    by 0x826658B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==1979193==    by 0x82665D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==1979193==    by 0x12AA12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==1979193==    by 0x123ACF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==1979193==    by 0x127372: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==1979193==    by 0x127212: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1979193==    by 0x1278A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1979193==    by 0x121E00: main (TestCardiacSimulation.cpp:19)
==1979193== 
==1979193== Open file descriptor 117:
==1979193==    <inherited from parent>
==1979193== 
==1979193== Open file descriptor 110:
==1979193==    <inherited from parent>
==1979193== 
==1979193== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacSimulation_valgrind.txt
==1979193==    <inherited from parent>
==1979193== 
==1979193== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==1979193==    <inherited from parent>
==1979193== 
==1979193== 
==1979193== HEAP SUMMARY:
==1979193==     in use at exit: 708,588 bytes in 9,399 blocks
==1979193==   total heap usage: 4,725,618 allocs, 4,716,219 frees, 2,842,089,752 bytes allocated
==1979193== 
==1979193== 552 bytes in 1 blocks are definitely lost in loss record 51 of 78
==1979193==    at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==1979193==    by 0x14591C13: ???
==1979193==    by 0x1459222C: ???
==1979193==    by 0x145054B7: ???
==1979193==    by 0x9FF415A: ompi_proc_complete_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1979193==    by 0xA08EA97: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1979193==    by 0xA027D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1979193==    by 0x8D1ED38: PetscInitialize (pinit.c:924)
==1979193==    by 0x826658B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==1979193==    by 0x82665D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==1979193==    by 0x12AA12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==1979193==    by 0x123ACF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==1979193==    by 0x127372: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==1979193==    by 0x127212: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1979193==    by 0x1278A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1979193==    by 0x121E00: main (TestCardiacSimulation.cpp:19)
==1979193== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: definite
   fun:calloc
   obj:*
   obj:*
   obj:*
   fun:ompi_proc_complete_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==1979193== 685,269 (136 direct, 685,133 indirect) bytes in 1 blocks are definitely lost in loss record 78 of 78
==1979193==    at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==1979193==    by 0x1570474E: ???
==1979193==    by 0x15704E0B: ???
==1979193==    by 0x15707F56: ???
==1979193==    by 0x156FD65D: ???
==1979193==    by 0x156FDFA3: ???
==1979193==    by 0xE917F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==1979193==    by 0xE8F3AE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==1979193==    by 0xE8A4CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==1979193==    by 0xE7D1EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==1979193==    by 0x13CC3F03: ???
==1979193==    by 0xE8064CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==1979193==    by 0xA08E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1979193==    by 0xA027D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1979193==    by 0x8D1ED38: PetscInitialize (pinit.c:924)
==1979193==    by 0x826658B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==1979193==    by 0x82665D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==1979193==    by 0x12AA12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==1979193==    by 0x123ACF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==1979193==    by 0x127372: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==1979193==    by 0x127212: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1979193==    by 0x1278A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1979193==    by 0x121E00: main (TestCardiacSimulation.cpp:19)
==1979193== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: definite
   fun:calloc
   obj:*
   obj:*
   obj:*
   obj:*
   obj:*
   obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2
   fun:hwloc_topology_load
   fun:opal_hwloc_base_get_topology
   fun:orte_ess_base_proc_binding
   obj:*
   fun:orte_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==1979193== LEAK SUMMARY:
==1979193==    definitely lost: 688 bytes in 2 blocks
==1979193==    indirectly lost: 1,760 bytes in 16 blocks
==1979193==      possibly lost: 0 bytes in 0 blocks
==1979193==    still reachable: 8,951 bytes in 22 blocks
==1979193==         suppressed: 697,189 bytes in 9,359 blocks
==1979193== Reachable blocks (those to which a pointer was found) are not shown.
==1979193== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==1979193== 
==1979193== Use --track-origins=yes to see where uninitialised values come from
==1979193== For lists of detected and suppressed errors, rerun with: -s
==1979193== ERROR SUMMARY: 203 errors from 6 contexts (suppressed: 25 from 25)
