==2062885== Memcheck, a memory error detector
==2062885== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==2062885== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==2062885== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info
==2062885== Parent PID: 2040441
==2062885== 
==2062885== WARNING: pwritev(vector[...]) is an obsolete suppression line not supported in valgrind 3.15 or later.
==2062885== You should replace [...] by a specific index such as [0] or [1] or [2] or similar
==2062885== 
==2062885== Syscall param socketcall.getsockopt(optlen) points to uninitialised byte(s)
==2062885==    at 0xBA6079E: getsockopt_syscall (getsockopt.c:29)
==2062885==    by 0xBA6079E: getsockopt (getsockopt.c:94)
==2062885==    by 0x1467D157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==2062885==    by 0x14684A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==2062885==    by 0x1468BDF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==2062885==    by 0x1458B3C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==2062885==    by 0x14504E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so)
==2062885==    by 0x13CC3E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so)
==2062885==    by 0xF9854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==2062885==    by 0xB33E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2062885==    by 0xB2D7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2062885==    by 0x9C19D38: PetscInitialize (pinit.c:924)
==2062885==    by 0x9A8958B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==2062885==    by 0x9A895D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==2062885==    by 0x154BCC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==2062885==    by 0x14A8EF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==2062885==    by 0x14DB8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==2062885==    by 0x14DA2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==2062885==    by 0x14E0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==2062885==    by 0x148BD0: main (TestMonodomainProblem.cpp:19)
==2062885==  Address 0x1ffeffdfcc is on thread 1's stack
==2062885==  in frame #2, created by pmix_ptl_base_make_connection (???:)
==2062885== 
{
   <insert_a_suppression_name_here>
   Memcheck:Param
   socketcall.getsockopt(optlen)
   fun:getsockopt_syscall
   fun:getsockopt
   fun:pmix_ptl_base_set_timeout
   fun:pmix_ptl_base_make_connection
   obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2
   fun:PMIx_Init
   fun:ext3x_client_init
   obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so
   fun:orte_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==2062885== Syscall param socketcall.getsockopt(optlen_out) points to uninitialised byte(s)
==2062885==    at 0xBA6079E: getsockopt_syscall (getsockopt.c:29)
==2062885==    by 0xBA6079E: getsockopt (getsockopt.c:94)
==2062885==    by 0x1467D157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==2062885==    by 0x14684A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==2062885==    by 0x1468BDF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==2062885==    by 0x1458B3C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==2062885==    by 0x14504E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so)
==2062885==    by 0x13CC3E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so)
==2062885==    by 0xF9854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==2062885==    by 0xB33E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2062885==    by 0xB2D7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2062885==    by 0x9C19D38: PetscInitialize (pinit.c:924)
==2062885==    by 0x9A8958B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==2062885==    by 0x9A895D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==2062885==    by 0x154BCC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==2062885==    by 0x14A8EF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==2062885==    by 0x14DB8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==2062885==    by 0x14DA2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==2062885==    by 0x14E0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==2062885==    by 0x148BD0: main (TestMonodomainProblem.cpp:19)
==2062885==  Address 0x1ffeffdfcc is on thread 1's stack
==2062885==  in frame #2, created by pmix_ptl_base_make_connection (???:)
==2062885== 
{
   <insert_a_suppression_name_here>
   Memcheck:Param
   socketcall.getsockopt(optlen_out)
   fun:getsockopt_syscall
   fun:getsockopt
   fun:pmix_ptl_base_set_timeout
   fun:pmix_ptl_base_make_connection
   obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2
   fun:PMIx_Init
   fun:ext3x_client_init
   obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so
   fun:orte_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==2062885== Syscall param setsockopt(optlen) contains uninitialised byte(s)
==2062885==    at 0xBA60C7E: setsockopt_syscall (setsockopt.c:29)
==2062885==    by 0xBA60C7E: setsockopt (setsockopt.c:95)
==2062885==    by 0x14684BA9: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==2062885==    by 0x1468BDF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==2062885==    by 0x1458B3C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==2062885==    by 0x14504E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so)
==2062885==    by 0x13CC3E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so)
==2062885==    by 0xF9854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==2062885==    by 0xB33E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2062885==    by 0xB2D7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2062885==    by 0x9C19D38: PetscInitialize (pinit.c:924)
==2062885==    by 0x9A8958B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==2062885==    by 0x9A895D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==2062885==    by 0x154BCC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==2062885==    by 0x14A8EF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==2062885==    by 0x14DB8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==2062885==    by 0x14DA2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==2062885==    by 0x14E0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==2062885==    by 0x148BD0: main (TestMonodomainProblem.cpp:19)
==2062885== 
{
   <insert_a_suppression_name_here>
   Memcheck:Param
   setsockopt(optlen)
   fun:setsockopt_syscall
   fun:setsockopt
   fun:pmix_ptl_base_make_connection
   obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2
   fun:PMIx_Init
   fun:ext3x_client_init
   obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so
   fun:orte_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==2062885== Syscall param pwrite64(buf) points to uninitialised byte(s)
==2062885==    at 0xBA4B9EF: __libc_pwrite64 (pwrite64.c:25)
==2062885==    by 0xBA4B9EF: pwrite (pwrite64.c:23)
==2062885==    by 0x176FA9D2: mca_fbtl_posix_pwritev (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_fbtl_posix.so)
==2062885==    by 0x1770A419: mca_common_ompio_file_write (in /usr/lib/x86_64-linux-gnu/libmca_common_ompio.so.41.29.2)
==2062885==    by 0x1770A79A: mca_common_ompio_file_write_at (in /usr/lib/x86_64-linux-gnu/libmca_common_ompio.so.41.29.2)
==2062885==    by 0x175F589A: mca_io_ompio_file_write_at (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_io_ompio.so)
==2062885==    by 0xB2CB6A7: PMPI_File_write_at (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2062885==    by 0xB16AFEB: ??? (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xAFAA4ED: H5FD_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xAF8D313: H5F__accum_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xB088442: H5PB_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xAF94DEA: H5F_block_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xAF1EE98: H5C__flush_single_entry (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xB15E3F9: H5C_apply_candidate_list (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xB15F9CA: H5AC__run_sync_point (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xB16047E: H5AC__flush_entries (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xAEFB54C: H5AC_flush (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xAF93936: ??? (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xAF943FE: H5F__dest (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xAF97BB2: H5F_try_close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xAF97EFB: H5F__close_cb (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xB00751F: H5I_dec_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xB0075EA: H5I_dec_app_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xAF94831: H5F__close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xAF89881: H5Fclose (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0x99B8967: Hdf5DataWriter::Close() (Hdf5DataWriter.cpp:1100)
==2062885==    by 0x99B3647: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:273)
==2062885==    by 0x99B36ED: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:283)
==2062885==    by 0x6858337: AbstractCardiacProblem<1u, 1u, 1u>::CloseFilesAndPostProcess() (AbstractCardiacProblem.cpp:597)
==2062885==    by 0x6857ED7: AbstractCardiacProblem<1u, 1u, 1u>::Solve() (AbstractCardiacProblem.cpp:582)
==2062885==    by 0x1559F5: TestMonodomainProblem::TestMonodomainProblemSimplestMesh1D() (TestMonodomainProblem.hpp:207)
==2062885==    by 0x17C1A2: TestDescription_TestMonodomainProblem_TestMonodomainProblemSimplestMesh1D::runTest() (TestMonodomainProblem.cpp:31)
==2062885==    by 0x149EEA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==2062885==    by 0x14DE38: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==2062885==    by 0x14DD1D: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==2062885==    by 0x14DBC3: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==2062885==    by 0x14DA2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==2062885==    by 0x14E0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==2062885==    by 0x148BD0: main (TestMonodomainProblem.cpp:19)
==2062885==  Address 0x15a7842e is 62 bytes inside a block of size 320 alloc'd
==2062885==    at 0x4848899: malloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==2062885==    by 0xAF1EE26: H5C__flush_single_entry (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xB15E3F9: H5C_apply_candidate_list (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xB15F9CA: H5AC__run_sync_point (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xB16047E: H5AC__flush_entries (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xAEFB54C: H5AC_flush (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xAF93936: ??? (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xAF943FE: H5F__dest (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xAF97BB2: H5F_try_close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xAF97EFB: H5F__close_cb (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xB00751F: H5I_dec_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xB0075EA: H5I_dec_app_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xAF94831: H5F__close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0xAF89881: H5Fclose (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==2062885==    by 0x99B8967: Hdf5DataWriter::Close() (Hdf5DataWriter.cpp:1100)
==2062885==    by 0x99B3647: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:273)
==2062885==    by 0x99B36ED: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:283)
==2062885==    by 0x6858337: AbstractCardiacProblem<1u, 1u, 1u>::CloseFilesAndPostProcess() (AbstractCardiacProblem.cpp:597)
==2062885==    by 0x6857ED7: AbstractCardiacProblem<1u, 1u, 1u>::Solve() (AbstractCardiacProblem.cpp:582)
==2062885==    by 0x1559F5: TestMonodomainProblem::TestMonodomainProblemSimplestMesh1D() (TestMonodomainProblem.hpp:207)
==2062885==    by 0x17C1A2: TestDescription_TestMonodomainProblem_TestMonodomainProblemSimplestMesh1D::runTest() (TestMonodomainProblem.cpp:31)
==2062885==    by 0x149EEA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==2062885==    by 0x14DE38: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==2062885==    by 0x14DD1D: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==2062885==    by 0x14DBC3: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==2062885==    by 0x14DA2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==2062885==    by 0x14E0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==2062885==    by 0x148BD0: main (TestMonodomainProblem.cpp:19)
==2062885== 
{
   <insert_a_suppression_name_here>
   Memcheck:Param
   pwrite64(buf)
   fun:__libc_pwrite64
   fun:pwrite
   fun:mca_fbtl_posix_pwritev
   fun:mca_common_ompio_file_write
   fun:mca_common_ompio_file_write_at
   fun:mca_io_ompio_file_write_at
   fun:PMPI_File_write_at
   obj:/usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0
   fun:H5FD_write
   fun:H5F__accum_write
   fun:H5PB_write
   fun:H5F_block_write
   fun:H5C__flush_single_entry
   fun:H5C_apply_candidate_list
   fun:H5AC__run_sync_point
   fun:H5AC__flush_entries
   fun:H5AC_flush
   obj:/usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0
   fun:H5F__dest
   fun:H5F_try_close
   fun:H5F__close_cb
   fun:H5I_dec_ref
   fun:H5I_dec_app_ref
   fun:H5F__close
   fun:H5Fclose
   fun:_ZN14Hdf5DataWriter5CloseEv
   fun:_ZN14Hdf5DataWriterD1Ev
   fun:_ZN14Hdf5DataWriterD0Ev
   fun:_ZN22AbstractCardiacProblemILj1ELj1ELj1EE24CloseFilesAndPostProcessEv
   fun:_ZN22AbstractCardiacProblemILj1ELj1ELj1EE5SolveEv
   fun:_ZN21TestMonodomainProblem35TestMonodomainProblemSimplestMesh1DEv
   fun:_ZN73TestDescription_TestMonodomainProblem_TestMonodomainProblemSimplestMesh1D7runTestEv
   fun:_ZN7CxxTest19RealTestDescription3runEv
   fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE
   fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==2062885== Warning: invalid file descriptor -1 in syscall close()
==2062885== 
==2062885== FILE DESCRIPTORS: 9 open (3 std) at exit.
==2062885== Open file descriptor 12:
==2062885==    at 0xBA4E22D: pipe (pipe.c:29)
==2062885==    by 0x13CC407D: ???
==2062885==    by 0xF9854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==2062885==    by 0xB33E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2062885==    by 0xB2D7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2062885==    by 0x9C19D38: PetscInitialize (pinit.c:924)
==2062885==    by 0x9A8958B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==2062885==    by 0x9A895D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==2062885==    by 0x154BCC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==2062885==    by 0x14A8EF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==2062885==    by 0x14DB8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==2062885==    by 0x14DA2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==2062885==    by 0x14E0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==2062885==    by 0x148BD0: main (TestMonodomainProblem.cpp:19)
==2062885== 
==2062885== Open file descriptor 8: /dev/shm/open_mpi.0000
==2062885==    at 0xBA52BCC: __open_nocancel (open64_nocancel.c:39)
==2062885==    by 0xB9D6C4F: shm_open@@GLIBC_2.34 (shm_open.c:40)
==2062885==    by 0x9AC1822: ???
==2062885==    by 0x9AC196F: ???
==2062885==    by 0xFA2A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==2062885==    by 0xFA2A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==2062885==    by 0xF9E0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==2062885==    by 0xF9852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==2062885==    by 0xB33E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2062885==    by 0xB2D7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2062885==    by 0x9C19D38: PetscInitialize (pinit.c:924)
==2062885==    by 0x9A8958B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==2062885==    by 0x9A895D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==2062885==    by 0x154BCC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==2062885==    by 0x14A8EF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==2062885==    by 0x14DB8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==2062885==    by 0x14DA2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==2062885==    by 0x14E0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==2062885==    by 0x148BD0: main (TestMonodomainProblem.cpp:19)
==2062885== 
==2062885== Open file descriptor 117:
==2062885==    <inherited from parent>
==2062885== 
==2062885== Open file descriptor 110:
==2062885==    <inherited from parent>
==2062885== 
==2062885== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt
==2062885==    <inherited from parent>
==2062885== 
==2062885== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==2062885==    <inherited from parent>
==2062885== 
==2062885== 
==2062885== HEAP SUMMARY:
==2062885==     in use at exit: 701,168 bytes in 9,383 blocks
==2062885==   total heap usage: 6,603,253 allocs, 6,593,870 frees, 4,030,770,664 bytes allocated
==2062885== 
==2062885== 552 bytes in 1 blocks are definitely lost in loss record 39 of 65
==2062885==    at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==2062885==    by 0x14592C13: ???
==2062885==    by 0x1459322C: ???
==2062885==    by 0x145064B7: ???
==2062885==    by 0xB2A415A: ompi_proc_complete_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2062885==    by 0xB33EA97: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2062885==    by 0xB2D7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2062885==    by 0x9C19D38: PetscInitialize (pinit.c:924)
==2062885==    by 0x9A8958B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==2062885==    by 0x9A895D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==2062885==    by 0x154BCC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==2062885==    by 0x14A8EF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==2062885==    by 0x14DB8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==2062885==    by 0x14DA2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==2062885==    by 0x14E0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==2062885==    by 0x148BD0: main (TestMonodomainProblem.cpp:19)
==2062885== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: definite
   fun:calloc
   obj:*
   obj:*
   obj:*
   fun:ompi_proc_complete_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==2062885== 84,459 (136 direct, 84,323 indirect) bytes in 1 blocks are definitely lost in loss record 62 of 65
==2062885==    at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==2062885==    by 0x1570574E: ???
==2062885==    by 0x15705E0B: ???
==2062885==    by 0x15708F56: ???
==2062885==    by 0x156FE65D: ???
==2062885==    by 0x156FEFA3: ???
==2062885==    by 0xFA96F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==2062885==    by 0xFA72AE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==2062885==    by 0xFA23CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==2062885==    by 0xF950EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==2062885==    by 0x13CC4F03: ???
==2062885==    by 0xF9854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==2062885==    by 0xB33E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2062885==    by 0xB2D7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==2062885==    by 0x9C19D38: PetscInitialize (pinit.c:924)
==2062885==    by 0x9A8958B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==2062885==    by 0x9A895D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==2062885==    by 0x154BCC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==2062885==    by 0x14A8EF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==2062885==    by 0x14DB8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==2062885==    by 0x14DA2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==2062885==    by 0x14E0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==2062885==    by 0x148BD0: main (TestMonodomainProblem.cpp:19)
==2062885== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: definite
   fun:calloc
   obj:*
   obj:*
   obj:*
   obj:*
   obj:*
   obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2
   fun:hwloc_topology_load
   fun:opal_hwloc_base_get_topology
   fun:orte_ess_base_proc_binding
   obj:*
   fun:orte_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==2062885== LEAK SUMMARY:
==2062885==    definitely lost: 688 bytes in 2 blocks
==2062885==    indirectly lost: 1,760 bytes in 16 blocks
==2062885==      possibly lost: 0 bytes in 0 blocks
==2062885==    still reachable: 1,531 bytes in 6 blocks
==2062885==         suppressed: 697,189 bytes in 9,359 blocks
==2062885== Reachable blocks (those to which a pointer was found) are not shown.
==2062885== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==2062885== 
==2062885== Use --track-origins=yes to see where uninitialised values come from
==2062885== For lists of detected and suppressed errors, rerun with: -s
==2062885== ERROR SUMMARY: 100 errors from 6 contexts (suppressed: 28 from 28)