==2259326== Memcheck, a memory error detector ==2259326== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2259326== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2259326== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSingleOdeWntCellCycleModel -malloc_debug -malloc_dump -memory_info ==2259326== Parent PID: 2239309 ==2259326== ==2259326== WARNING: pwritev(vector[...]) is an obsolete suppression line not supported in valgrind 3.15 or later. ==2259326== You should replace [...] by a specific index such as [0] or [1] or [2] or similar ==2259326== ==2259326== Syscall param socketcall.getsockopt(optlen) points to uninitialised byte(s) ==2259326== at 0xFE8679E: getsockopt_syscall (getsockopt.c:29) ==2259326== by 0xFE8679E: getsockopt (getsockopt.c:94) ==2259326== by 0x1ABAB157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2259326== by 0x1ABB2A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2259326== by 0x1ABB9DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2259326== by 0x1AAB93C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2259326== by 0x1AA32E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==2259326== by 0x1A1F1E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==2259326== by 0x147404CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2259326== by 0xF77E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2259326== by 0xF717D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2259326== by 0xE40ED38: PetscInitialize (pinit.c:924) ==2259326== by 0xE28058B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2259326== by 0xE2805D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2259326== by 0x1961C3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2259326== by 0x18D1DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2259326== by 0x190592: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2259326== by 0x19048D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2259326== by 0x190AA1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2259326== by 0x18ADE0: main (TestSingleOdeWntCellCycleModel.cpp:18) ==2259326== Address 0x1ffeffdf9c is on thread 1's stack ==2259326== in frame #2, created by pmix_ptl_base_make_connection (???:) ==2259326== { Memcheck:Param socketcall.getsockopt(optlen) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2259326== Syscall param socketcall.getsockopt(optlen_out) points to uninitialised byte(s) ==2259326== at 0xFE8679E: getsockopt_syscall (getsockopt.c:29) ==2259326== by 0xFE8679E: getsockopt (getsockopt.c:94) ==2259326== by 0x1ABAB157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2259326== by 0x1ABB2A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2259326== by 0x1ABB9DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2259326== by 0x1AAB93C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2259326== by 0x1AA32E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==2259326== by 0x1A1F1E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==2259326== by 0x147404CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2259326== by 0xF77E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2259326== by 0xF717D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2259326== by 0xE40ED38: PetscInitialize (pinit.c:924) ==2259326== by 0xE28058B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2259326== by 0xE2805D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2259326== by 0x1961C3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2259326== by 0x18D1DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2259326== by 0x190592: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2259326== by 0x19048D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2259326== by 0x190AA1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2259326== by 0x18ADE0: main (TestSingleOdeWntCellCycleModel.cpp:18) ==2259326== Address 0x1ffeffdf9c is on thread 1's stack ==2259326== in frame #2, created by pmix_ptl_base_make_connection (???:) ==2259326== { Memcheck:Param socketcall.getsockopt(optlen_out) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2259326== Syscall param setsockopt(optlen) contains uninitialised byte(s) ==2259326== at 0xFE86C7E: setsockopt_syscall (setsockopt.c:29) ==2259326== by 0xFE86C7E: setsockopt (setsockopt.c:95) ==2259326== by 0x1ABB2BA9: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2259326== by 0x1ABB9DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2259326== by 0x1AAB93C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2259326== by 0x1AA32E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==2259326== by 0x1A1F1E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==2259326== by 0x147404CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2259326== by 0xF77E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2259326== by 0xF717D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2259326== by 0xE40ED38: PetscInitialize (pinit.c:924) ==2259326== by 0xE28058B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2259326== by 0xE2805D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2259326== by 0x1961C3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2259326== by 0x18D1DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2259326== by 0x190592: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2259326== by 0x19048D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2259326== by 0x190AA1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2259326== by 0x18ADE0: main (TestSingleOdeWntCellCycleModel.cpp:18) ==2259326== { Memcheck:Param setsockopt(optlen) fun:setsockopt_syscall fun:setsockopt fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2259326== Use of uninitialised value of size 8 ==2259326== at 0xF91C81B: ??? (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==2259326== by 0xF91CF99: std::ostreambuf_iterator > std::num_put > >::_M_insert_int(std::ostreambuf_iterator >, std::ios_base&, char, unsigned long) const (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==2259326== by 0xF92B399: std::ostream& std::ostream::_M_insert(unsigned long) (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==2259326== by 0x1B473C: void boost::archive::basic_text_oprimitive::save_impl(unsigned int const&, mpl_::bool_&) (basic_text_oprimitive.hpp:130) ==2259326== by 0x1B41FB: void boost::archive::basic_text_oprimitive::save(unsigned int const&) (basic_text_oprimitive.hpp:180) ==2259326== by 0x1B3C2E: void boost::archive::text_oarchive_impl::save(unsigned int const&) (text_oarchive.hpp:65) ==2259326== by 0x1B465F: void boost::archive::save_access::save_primitive(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:93) ==2259326== by 0x1B40A3: void boost::archive::detail::save_non_pointer_type::save_primitive::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:237) ==2259326== by 0x1B3B6B: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:315) ==2259326== by 0x1B3593: void boost::archive::save(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:539) ==2259326== by 0x1B312F: void boost::archive::detail::common_oarchive::save_override(unsigned int const&) (common_oarchive.hpp:71) ==2259326== by 0x1B2E4C: void boost::archive::basic_text_oarchive::save_override(unsigned int const&) (basic_text_oarchive.hpp:83) ==2259326== by 0x1B29D9: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (unsigned int const&) (interface_oarchive.hpp:70) ==2259326== by 0x1B26AD: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(unsigned int const&) (interface_oarchive.hpp:77) ==2259326== by 0xB53A5ED: void AbstractSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (AbstractSrnModel.hpp:83) ==2259326== by 0xB539772: void boost::serialization::access::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (access.hpp:116) ==2259326== by 0xB53848C: void boost::serialization::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:68) ==2259326== by 0xB537682: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:118) ==2259326== by 0xB536FAD: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==2259326== by 0xB536A3D: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:258) ==2259326== by 0xB536607: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:315) ==2259326== by 0xB5361D8: void boost::archive::save(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:539) ==2259326== by 0xB535E77: void boost::archive::detail::common_oarchive::save_override(AbstractSrnModel const&) (common_oarchive.hpp:71) ==2259326== by 0xB535B06: void boost::archive::basic_text_oarchive::save_override(AbstractSrnModel const&) (basic_text_oarchive.hpp:83) ==2259326== by 0xB5356E1: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (AbstractSrnModel const&) (interface_oarchive.hpp:70) ==2259326== by 0xB53536B: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(AbstractSrnModel const&) (interface_oarchive.hpp:77) ==2259326== by 0xB656156: void NullSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (NullSrnModel.hpp:67) ==2259326== by 0xB655DAE: void boost::serialization::access::serialize(boost::archive::text_oarchive&, NullSrnModel&, unsigned int) (access.hpp:116) ==2259326== by 0xB65573E: void boost::serialization::serialize(boost::archive::text_oarchive&, NullSrnModel&, unsigned int) (serialization.hpp:68) ==2259326== by 0xB654F8E: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, NullSrnModel&, unsigned int) (serialization.hpp:118) ==2259326== by 0xB654915: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==2259326== by 0xB656ED5: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, NullSrnModel const&) (oserializer.hpp:258) ==2259326== by 0xB656DBA: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, NullSrnModel const&) (oserializer.hpp:315) ==2259326== by 0xB656BDE: void boost::archive::save(boost::archive::text_oarchive&, NullSrnModel const&) (oserializer.hpp:539) ==2259326== by 0xB656A25: void boost::archive::detail::common_oarchive::save_override(NullSrnModel const&) (common_oarchive.hpp:71) ==2259326== by 0xB656840: void boost::archive::basic_text_oarchive::save_override(NullSrnModel const&) (basic_text_oarchive.hpp:83) ==2259326== by 0xB656735: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (NullSrnModel const&) (interface_oarchive.hpp:70) ==2259326== by 0xB6565B4: void boost::serialization::save(boost::archive::text_oarchive&, boost::serialization::nvp const&, unsigned int) (nvp.hpp:48) ==2259326== by 0xB65646A: boost::serialization::free_saver >::invoke(boost::archive::text_oarchive&, boost::serialization::nvp const&, unsigned int) (split_free.hpp:45) ==2259326== by 0xB65635C: void boost::serialization::split_free >(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (split_free.hpp:74) ==2259326== by 0xB656186: void boost::serialization::serialize(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (nvp.hpp:65) ==2259326== by 0xB655E0B: void boost::serialization::serialize_adl >(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (serialization.hpp:118) ==2259326== by 0xB655778: void boost::archive::detail::save_non_pointer_type::save_only::invoke >(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:246) ==2259326== by 0xB654FD1: void boost::archive::detail::save_non_pointer_type::invoke >(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:315) ==2259326== by 0xB654957: void boost::archive::save const>(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:539) ==2259326== by 0xB6544FF: void boost::archive::detail::common_oarchive::save_override const>(boost::serialization::nvp const&) (common_oarchive.hpp:71) ==2259326== by 0xB653F52: void boost::archive::basic_text_oarchive::save_override const>(boost::serialization::nvp const&) (basic_text_oarchive.hpp:83) ==2259326== by 0xB6538ED: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< >(boost::serialization::nvp const&) (interface_oarchive.hpp:70) ==2259326== by 0xB653358: boost::archive::detail::pointer_oserializer::save_object_ptr(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:206) ==2259326== by 0xE2F0389: ??? (in /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0) ==2259326== { Memcheck:Value8 obj:/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30 fun:_ZNKSt7num_putIcSt19ostreambuf_iteratorIcSt11char_traitsIcEEE13_M_insert_intImEES3_S3_RSt8ios_basecT_ fun:_ZNSo9_M_insertImEERSoT_ fun:_ZN5boost7archive21basic_text_oprimitiveISoE9save_implIjEEvRKT_RN4mpl_5bool_ILb0EEE fun:_ZN5boost7archive21basic_text_oprimitiveISoE4saveIjEEvRKT_ fun:_ZN5boost7archive18text_oarchive_implINS0_13text_oarchiveEE4saveIjEEvRKT_ fun:_ZN5boost7archive11save_access14save_primitiveINS0_13text_oarchiveEjEEvRT_RKT0_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE14save_primitive6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEKjEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsIjEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanIjEERS3_RKT_ fun:_ZN16AbstractSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE16AbstractSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK16AbstractSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI16AbstractSrnModelEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanI16AbstractSrnModelEERS3_RKT_ fun:_ZN12NullSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE12NullSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI12NullSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI12NullSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK12NullSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK12NullSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK12NullSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI12NullSrnModelEERS3_RKT_ fun:_ZN5boost13serialization4saveINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RKNS0_3nvpIT0_EEj fun:_ZN5boost13serialization10free_saverINS_7archive13text_oarchiveENS0_3nvpI12NullSrnModelEEE6invokeERS3_RKS6_j fun:_ZN5boost13serialization10split_freeINS_7archive13text_oarchiveENS0_3nvpI12NullSrnModelEEEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RNS0_3nvpIT0_EEj fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveENS0_3nvpI12NullSrnModelEEEEvRT_RT0_j fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE9save_only6invokeINS_13serialization3nvpI12NullSrnModelEEEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeINS_13serialization3nvpI12NullSrnModelEEEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEKNS_13serialization3nvpI12NullSrnModelEEEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIKNS_13serialization3nvpI12NullSrnModelEEEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIKNS_13serialization3nvpI12NullSrnModelEEEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsINS_13serialization3nvpI12NullSrnModelEEEERS3_RKT_ fun:_ZNK5boost7archive6detail19pointer_oserializerINS0_13text_oarchiveE12NullSrnModelE15save_object_ptrERNS1_14basic_oarchiveEPKv obj:/usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0 } ==2259326== Conditional jump or move depends on uninitialised value(s) ==2259326== at 0xF91C82D: ??? (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==2259326== by 0xF91CF99: std::ostreambuf_iterator > std::num_put > >::_M_insert_int(std::ostreambuf_iterator >, std::ios_base&, char, unsigned long) const (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==2259326== by 0xF92B399: std::ostream& std::ostream::_M_insert(unsigned long) (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==2259326== by 0x1B473C: void boost::archive::basic_text_oprimitive::save_impl(unsigned int const&, mpl_::bool_&) (basic_text_oprimitive.hpp:130) ==2259326== by 0x1B41FB: void boost::archive::basic_text_oprimitive::save(unsigned int const&) (basic_text_oprimitive.hpp:180) ==2259326== by 0x1B3C2E: void boost::archive::text_oarchive_impl::save(unsigned int const&) (text_oarchive.hpp:65) ==2259326== by 0x1B465F: void boost::archive::save_access::save_primitive(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:93) ==2259326== by 0x1B40A3: void boost::archive::detail::save_non_pointer_type::save_primitive::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:237) ==2259326== by 0x1B3B6B: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:315) ==2259326== by 0x1B3593: void boost::archive::save(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:539) ==2259326== by 0x1B312F: void boost::archive::detail::common_oarchive::save_override(unsigned int const&) (common_oarchive.hpp:71) ==2259326== by 0x1B2E4C: void boost::archive::basic_text_oarchive::save_override(unsigned int const&) (basic_text_oarchive.hpp:83) ==2259326== by 0x1B29D9: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (unsigned int const&) (interface_oarchive.hpp:70) ==2259326== by 0x1B26AD: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(unsigned int const&) (interface_oarchive.hpp:77) ==2259326== by 0xB53A5ED: void AbstractSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (AbstractSrnModel.hpp:83) ==2259326== by 0xB539772: void boost::serialization::access::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (access.hpp:116) ==2259326== by 0xB53848C: void boost::serialization::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:68) ==2259326== by 0xB537682: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:118) ==2259326== by 0xB536FAD: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==2259326== by 0xB536A3D: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:258) ==2259326== by 0xB536607: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:315) ==2259326== by 0xB5361D8: void boost::archive::save(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:539) ==2259326== by 0xB535E77: void boost::archive::detail::common_oarchive::save_override(AbstractSrnModel const&) (common_oarchive.hpp:71) ==2259326== by 0xB535B06: void boost::archive::basic_text_oarchive::save_override(AbstractSrnModel const&) (basic_text_oarchive.hpp:83) ==2259326== by 0xB5356E1: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (AbstractSrnModel const&) (interface_oarchive.hpp:70) ==2259326== by 0xB53536B: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(AbstractSrnModel const&) (interface_oarchive.hpp:77) ==2259326== by 0xB656156: void NullSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (NullSrnModel.hpp:67) ==2259326== by 0xB655DAE: void boost::serialization::access::serialize(boost::archive::text_oarchive&, NullSrnModel&, unsigned int) (access.hpp:116) ==2259326== by 0xB65573E: void boost::serialization::serialize(boost::archive::text_oarchive&, NullSrnModel&, unsigned int) (serialization.hpp:68) ==2259326== by 0xB654F8E: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, NullSrnModel&, unsigned int) (serialization.hpp:118) ==2259326== by 0xB654915: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==2259326== by 0xB656ED5: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, NullSrnModel const&) (oserializer.hpp:258) ==2259326== by 0xB656DBA: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, NullSrnModel const&) (oserializer.hpp:315) ==2259326== by 0xB656BDE: void boost::archive::save(boost::archive::text_oarchive&, NullSrnModel const&) (oserializer.hpp:539) ==2259326== by 0xB656A25: void boost::archive::detail::common_oarchive::save_override(NullSrnModel const&) (common_oarchive.hpp:71) ==2259326== by 0xB656840: void boost::archive::basic_text_oarchive::save_override(NullSrnModel const&) (basic_text_oarchive.hpp:83) ==2259326== by 0xB656735: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (NullSrnModel const&) (interface_oarchive.hpp:70) ==2259326== by 0xB6565B4: void boost::serialization::save(boost::archive::text_oarchive&, boost::serialization::nvp const&, unsigned int) (nvp.hpp:48) ==2259326== by 0xB65646A: boost::serialization::free_saver >::invoke(boost::archive::text_oarchive&, boost::serialization::nvp const&, unsigned int) (split_free.hpp:45) ==2259326== by 0xB65635C: void boost::serialization::split_free >(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (split_free.hpp:74) ==2259326== by 0xB656186: void boost::serialization::serialize(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (nvp.hpp:65) ==2259326== by 0xB655E0B: void boost::serialization::serialize_adl >(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (serialization.hpp:118) ==2259326== by 0xB655778: void boost::archive::detail::save_non_pointer_type::save_only::invoke >(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:246) ==2259326== by 0xB654FD1: void boost::archive::detail::save_non_pointer_type::invoke >(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:315) ==2259326== by 0xB654957: void boost::archive::save const>(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:539) ==2259326== by 0xB6544FF: void boost::archive::detail::common_oarchive::save_override const>(boost::serialization::nvp const&) (common_oarchive.hpp:71) ==2259326== by 0xB653F52: void boost::archive::basic_text_oarchive::save_override const>(boost::serialization::nvp const&) (basic_text_oarchive.hpp:83) ==2259326== by 0xB6538ED: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< >(boost::serialization::nvp const&) (interface_oarchive.hpp:70) ==2259326== by 0xB653358: boost::archive::detail::pointer_oserializer::save_object_ptr(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:206) ==2259326== by 0xE2F0389: ??? (in /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0) ==2259326== { Memcheck:Cond obj:/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30 fun:_ZNKSt7num_putIcSt19ostreambuf_iteratorIcSt11char_traitsIcEEE13_M_insert_intImEES3_S3_RSt8ios_basecT_ fun:_ZNSo9_M_insertImEERSoT_ fun:_ZN5boost7archive21basic_text_oprimitiveISoE9save_implIjEEvRKT_RN4mpl_5bool_ILb0EEE fun:_ZN5boost7archive21basic_text_oprimitiveISoE4saveIjEEvRKT_ fun:_ZN5boost7archive18text_oarchive_implINS0_13text_oarchiveEE4saveIjEEvRKT_ fun:_ZN5boost7archive11save_access14save_primitiveINS0_13text_oarchiveEjEEvRT_RKT0_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE14save_primitive6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEKjEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsIjEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanIjEERS3_RKT_ fun:_ZN16AbstractSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE16AbstractSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK16AbstractSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI16AbstractSrnModelEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanI16AbstractSrnModelEERS3_RKT_ fun:_ZN12NullSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE12NullSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI12NullSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI12NullSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK12NullSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK12NullSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK12NullSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI12NullSrnModelEERS3_RKT_ fun:_ZN5boost13serialization4saveINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RKNS0_3nvpIT0_EEj fun:_ZN5boost13serialization10free_saverINS_7archive13text_oarchiveENS0_3nvpI12NullSrnModelEEE6invokeERS3_RKS6_j fun:_ZN5boost13serialization10split_freeINS_7archive13text_oarchiveENS0_3nvpI12NullSrnModelEEEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RNS0_3nvpIT0_EEj fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveENS0_3nvpI12NullSrnModelEEEEvRT_RT0_j fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE9save_only6invokeINS_13serialization3nvpI12NullSrnModelEEEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeINS_13serialization3nvpI12NullSrnModelEEEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEKNS_13serialization3nvpI12NullSrnModelEEEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIKNS_13serialization3nvpI12NullSrnModelEEEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIKNS_13serialization3nvpI12NullSrnModelEEEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsINS_13serialization3nvpI12NullSrnModelEEEERS3_RKT_ fun:_ZNK5boost7archive6detail19pointer_oserializerINS0_13text_oarchiveE12NullSrnModelE15save_object_ptrERNS1_14basic_oarchiveEPKv obj:/usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0 } ==2259326== ==2259326== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2259326== Open file descriptor 12: ==2259326== at 0xFE7422D: pipe (pipe.c:29) ==2259326== by 0x1A1F207D: ??? ==2259326== by 0x147404CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2259326== by 0xF77E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2259326== by 0xF717D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2259326== by 0xE40ED38: PetscInitialize (pinit.c:924) ==2259326== by 0xE28058B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2259326== by 0xE2805D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2259326== by 0x1961C3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2259326== by 0x18D1DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2259326== by 0x190592: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2259326== by 0x19048D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2259326== by 0x190AA1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2259326== by 0x18ADE0: main (TestSingleOdeWntCellCycleModel.cpp:18) ==2259326== ==2259326== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2259326== at 0xFE78BCC: __open_nocancel (open64_nocancel.c:39) ==2259326== by 0xFDFCC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2259326== by 0xE2B8822: ??? ==2259326== by 0xE2B896F: ??? ==2259326== by 0x147E56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2259326== by 0x147E5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2259326== by 0x1479B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2259326== by 0x147402DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2259326== by 0xF77E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2259326== by 0xF717D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2259326== by 0xE40ED38: PetscInitialize (pinit.c:924) ==2259326== by 0xE28058B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2259326== by 0xE2805D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2259326== by 0x1961C3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2259326== by 0x18D1DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2259326== by 0x190592: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2259326== by 0x19048D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2259326== by 0x190AA1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2259326== by 0x18ADE0: main (TestSingleOdeWntCellCycleModel.cpp:18) ==2259326== ==2259326== Open file descriptor 117: ==2259326== ==2259326== ==2259326== Open file descriptor 110: ==2259326== ==2259326== ==2259326== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSingleOdeWntCellCycleModel_valgrind.txt ==2259326== ==2259326== ==2259326== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2259326== ==2259326== ==2259326== ==2259326== HEAP SUMMARY: ==2259326== in use at exit: 700,935 bytes in 9,380 blocks ==2259326== total heap usage: 264,697 allocs, 255,317 frees, 1,372,246,161 bytes allocated ==2259326== ==2259326== 552 bytes in 1 blocks are definitely lost in loss record 42 of 68 ==2259326== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2259326== by 0x1AAC0C13: ??? ==2259326== by 0x1AAC122C: ??? ==2259326== by 0x1AA344B7: ??? ==2259326== by 0xF6E415A: ompi_proc_complete_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2259326== by 0xF77EA97: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2259326== by 0xF717D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2259326== by 0xE40ED38: PetscInitialize (pinit.c:924) ==2259326== by 0xE28058B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2259326== by 0xE2805D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2259326== by 0x1961C3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2259326== by 0x18D1DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2259326== by 0x190592: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2259326== by 0x19048D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2259326== by 0x190AA1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2259326== by 0x18ADE0: main (TestSingleOdeWntCellCycleModel.cpp:18) ==2259326== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* fun:ompi_proc_complete_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2259326== 84,459 (136 direct, 84,323 indirect) bytes in 1 blocks are definitely lost in loss record 65 of 68 ==2259326== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2259326== by 0x1C03374E: ??? ==2259326== by 0x1C033E0B: ??? ==2259326== by 0x1C036F56: ??? ==2259326== by 0x1C02C65D: ??? ==2259326== by 0x1C02CFA3: ??? ==2259326== by 0x14853F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==2259326== by 0x1482FAE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==2259326== by 0x147DECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2259326== by 0x1470BEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2259326== by 0x1A1F2F03: ??? ==2259326== by 0x147404CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2259326== by 0xF77E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2259326== by 0xF717D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2259326== by 0xE40ED38: PetscInitialize (pinit.c:924) ==2259326== by 0xE28058B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2259326== by 0xE2805D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2259326== by 0x1961C3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2259326== by 0x18D1DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2259326== by 0x190592: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2259326== by 0x19048D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2259326== by 0x190AA1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2259326== by 0x18ADE0: main (TestSingleOdeWntCellCycleModel.cpp:18) ==2259326== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* obj:* obj:* obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2 fun:hwloc_topology_load fun:opal_hwloc_base_get_topology fun:orte_ess_base_proc_binding obj:* fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2259326== LEAK SUMMARY: ==2259326== definitely lost: 688 bytes in 2 blocks ==2259326== indirectly lost: 1,760 bytes in 16 blocks ==2259326== possibly lost: 0 bytes in 0 blocks ==2259326== still reachable: 1,707 bytes in 9 blocks ==2259326== suppressed: 696,780 bytes in 9,353 blocks ==2259326== Reachable blocks (those to which a pointer was found) are not shown. ==2259326== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2259326== ==2259326== Use --track-origins=yes to see where uninitialised values come from ==2259326== For lists of detected and suppressed errors, rerun with: -s ==2259326== ERROR SUMMARY: 23 errors from 7 contexts (suppressed: 32 from 32)