==2304779== Memcheck, a memory error detector ==2304779== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2304779== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2304779== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedBidomainTissue -malloc_debug -malloc_dump -memory_info ==2304779== Parent PID: 2283975 ==2304779== ==2304779== WARNING: pwritev(vector[...]) is an obsolete suppression line not supported in valgrind 3.15 or later. ==2304779== You should replace [...] by a specific index such as [0] or [1] or [2] or similar ==2304779== ==2304779== Syscall param socketcall.getsockopt(optlen) points to uninitialised byte(s) ==2304779== at 0xB4EC79E: getsockopt_syscall (getsockopt.c:29) ==2304779== by 0xB4EC79E: getsockopt (getsockopt.c:94) ==2304779== by 0x1467E157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2304779== by 0x14685A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2304779== by 0x1468CDF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2304779== by 0x1458C3C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2304779== by 0x14505E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==2304779== by 0x13CC4E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==2304779== by 0xF4C84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2304779== by 0xB86F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2304779== by 0xB808D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2304779== by 0x9B91D38: PetscInitialize (pinit.c:924) ==2304779== by 0x9A0366F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2304779== by 0x9A036BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2304779== by 0x146230: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2304779== by 0x13F28D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2304779== by 0x141B9A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2304779== by 0x141A96: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2304779== by 0x1420A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2304779== by 0x13DA90: main (TestExtendedBidomainTissue.cpp:18) ==2304779== Address 0x1ffeffdfac is on thread 1's stack ==2304779== in frame #2, created by pmix_ptl_base_make_connection (???:) ==2304779== { Memcheck:Param socketcall.getsockopt(optlen) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2304779== Syscall param socketcall.getsockopt(optlen_out) points to uninitialised byte(s) ==2304779== at 0xB4EC79E: getsockopt_syscall (getsockopt.c:29) ==2304779== by 0xB4EC79E: getsockopt (getsockopt.c:94) ==2304779== by 0x1467E157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2304779== by 0x14685A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2304779== by 0x1468CDF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2304779== by 0x1458C3C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2304779== by 0x14505E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==2304779== by 0x13CC4E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==2304779== by 0xF4C84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2304779== by 0xB86F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2304779== by 0xB808D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2304779== by 0x9B91D38: PetscInitialize (pinit.c:924) ==2304779== by 0x9A0366F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2304779== by 0x9A036BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2304779== by 0x146230: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2304779== by 0x13F28D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2304779== by 0x141B9A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2304779== by 0x141A96: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2304779== by 0x1420A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2304779== by 0x13DA90: main (TestExtendedBidomainTissue.cpp:18) ==2304779== Address 0x1ffeffdfac is on thread 1's stack ==2304779== in frame #2, created by pmix_ptl_base_make_connection (???:) ==2304779== { Memcheck:Param socketcall.getsockopt(optlen_out) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2304779== Syscall param setsockopt(optlen) contains uninitialised byte(s) ==2304779== at 0xB4ECC7E: setsockopt_syscall (setsockopt.c:29) ==2304779== by 0xB4ECC7E: setsockopt (setsockopt.c:95) ==2304779== by 0x14685BA9: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2304779== by 0x1468CDF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2304779== by 0x1458C3C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2304779== by 0x14505E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==2304779== by 0x13CC4E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==2304779== by 0xF4C84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2304779== by 0xB86F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2304779== by 0xB808D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2304779== by 0x9B91D38: PetscInitialize (pinit.c:924) ==2304779== by 0x9A0366F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2304779== by 0x9A036BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2304779== by 0x146230: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2304779== by 0x13F28D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2304779== by 0x141B9A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2304779== by 0x141A96: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2304779== by 0x1420A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2304779== by 0x13DA90: main (TestExtendedBidomainTissue.cpp:18) ==2304779== { Memcheck:Param setsockopt(optlen) fun:setsockopt_syscall fun:setsockopt fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2304779== ==2304779== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2304779== Open file descriptor 12: ==2304779== at 0xB4DA22D: pipe (pipe.c:29) ==2304779== by 0x13CC507D: ??? ==2304779== by 0xF4C84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2304779== by 0xB86F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2304779== by 0xB808D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2304779== by 0x9B91D38: PetscInitialize (pinit.c:924) ==2304779== by 0x9A0366F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2304779== by 0x9A036BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2304779== by 0x146230: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2304779== by 0x13F28D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2304779== by 0x141B9A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2304779== by 0x141A96: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2304779== by 0x1420A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2304779== by 0x13DA90: main (TestExtendedBidomainTissue.cpp:18) ==2304779== ==2304779== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2304779== at 0xB4DEBCC: __open_nocancel (open64_nocancel.c:39) ==2304779== by 0xB462C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2304779== by 0x9A3B822: ??? ==2304779== by 0x9A3B96F: ??? ==2304779== by 0xF56D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2304779== by 0xF56D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2304779== by 0xF523922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2304779== by 0xF4C82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2304779== by 0xB86F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2304779== by 0xB808D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2304779== by 0x9B91D38: PetscInitialize (pinit.c:924) ==2304779== by 0x9A0366F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2304779== by 0x9A036BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2304779== by 0x146230: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2304779== by 0x13F28D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2304779== by 0x141B9A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2304779== by 0x141A96: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2304779== by 0x1420A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2304779== by 0x13DA90: main (TestExtendedBidomainTissue.cpp:18) ==2304779== ==2304779== Open file descriptor 117: ==2304779== ==2304779== ==2304779== Open file descriptor 110: ==2304779== ==2304779== ==2304779== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedBidomainTissue_valgrind.txt ==2304779== ==2304779== ==2304779== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2304779== ==2304779== ==2304779== ==2304779== HEAP SUMMARY: ==2304779== in use at exit: 700,759 bytes in 9,377 blocks ==2304779== total heap usage: 122,838 allocs, 113,461 frees, 1,369,377,995 bytes allocated ==2304779== ==2304779== 32 bytes in 1 blocks are possibly lost in loss record 16 of 68 ==2304779== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2304779== by 0x1570671E: ??? ==2304779== by 0x15706E0B: ??? ==2304779== by 0x15709F56: ??? ==2304779== by 0x156FF65D: ??? ==2304779== by 0x156FFFA3: ??? ==2304779== by 0xF5D9F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==2304779== by 0xF5B5AE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==2304779== by 0xF566CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2304779== by 0xF493EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2304779== by 0x13CC5F03: ??? ==2304779== by 0xF4C84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2304779== by 0xB86F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2304779== by 0xB808D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2304779== by 0x9B91D38: PetscInitialize (pinit.c:924) ==2304779== by 0x9A0366F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2304779== by 0x9A036BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2304779== by 0x146230: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2304779== by 0x13F28D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2304779== by 0x141B9A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2304779== by 0x141A96: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2304779== by 0x1420A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2304779== by 0x13DA90: main (TestExtendedBidomainTissue.cpp:18) ==2304779== { Memcheck:Leak match-leak-kinds: possible fun:calloc obj:* obj:* obj:* obj:* obj:* obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2 fun:hwloc_topology_load fun:opal_hwloc_base_get_topology fun:orte_ess_base_proc_binding obj:* fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2304779== 408 bytes in 3 blocks are possibly lost in loss record 39 of 68 ==2304779== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2304779== by 0x157066E8: ??? ==2304779== by 0x15706E0B: ??? ==2304779== by 0x15709F56: ??? ==2304779== by 0x156FF65D: ??? ==2304779== by 0x156FFFA3: ??? ==2304779== by 0xF5D9F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==2304779== by 0xF5B5AE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==2304779== by 0xF566CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2304779== by 0xF493EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2304779== by 0x13CC5F03: ??? ==2304779== by 0xF4C84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2304779== by 0xB86F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2304779== by 0xB808D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2304779== by 0x9B91D38: PetscInitialize (pinit.c:924) ==2304779== by 0x9A0366F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2304779== by 0x9A036BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2304779== by 0x146230: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2304779== by 0x13F28D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2304779== by 0x141B9A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2304779== by 0x141A96: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2304779== by 0x1420A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2304779== by 0x13DA90: main (TestExtendedBidomainTissue.cpp:18) ==2304779== { Memcheck:Leak match-leak-kinds: possible fun:calloc obj:* obj:* obj:* obj:* obj:* obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2 fun:hwloc_topology_load fun:opal_hwloc_base_get_topology fun:orte_ess_base_proc_binding obj:* fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2304779== 552 bytes in 1 blocks are definitely lost in loss record 42 of 68 ==2304779== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2304779== by 0x14593C13: ??? ==2304779== by 0x1459422C: ??? ==2304779== by 0x145074B7: ??? ==2304779== by 0xB7D515A: ompi_proc_complete_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2304779== by 0xB86FA97: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2304779== by 0xB808D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2304779== by 0x9B91D38: PetscInitialize (pinit.c:924) ==2304779== by 0x9A0366F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2304779== by 0x9A036BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2304779== by 0x146230: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2304779== by 0x13F28D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2304779== by 0x141B9A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2304779== by 0x141A96: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2304779== by 0x1420A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2304779== by 0x13DA90: main (TestExtendedBidomainTissue.cpp:18) ==2304779== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* fun:ompi_proc_complete_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2304779== 84,001 (136 direct, 83,865 indirect) bytes in 1 blocks are definitely lost in loss record 65 of 68 ==2304779== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2304779== by 0x1570674E: ??? ==2304779== by 0x15706E0B: ??? ==2304779== by 0x15709F56: ??? ==2304779== by 0x156FF65D: ??? ==2304779== by 0x156FFFA3: ??? ==2304779== by 0xF5D9F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==2304779== by 0xF5B5AE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==2304779== by 0xF566CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2304779== by 0xF493EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2304779== by 0x13CC5F03: ??? ==2304779== by 0xF4C84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2304779== by 0xB86F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2304779== by 0xB808D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2304779== by 0x9B91D38: PetscInitialize (pinit.c:924) ==2304779== by 0x9A0366F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2304779== by 0x9A036BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2304779== by 0x146230: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2304779== by 0x13F28D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2304779== by 0x141B9A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2304779== by 0x141A96: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2304779== by 0x1420A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2304779== by 0x13DA90: main (TestExtendedBidomainTissue.cpp:18) ==2304779== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* obj:* obj:* obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2 fun:hwloc_topology_load fun:opal_hwloc_base_get_topology fun:orte_ess_base_proc_binding obj:* fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2304779== LEAK SUMMARY: ==2304779== definitely lost: 688 bytes in 2 blocks ==2304779== indirectly lost: 1,320 bytes in 12 blocks ==2304779== possibly lost: 440 bytes in 4 blocks ==2304779== still reachable: 1,531 bytes in 6 blocks ==2304779== suppressed: 696,780 bytes in 9,353 blocks ==2304779== Reachable blocks (those to which a pointer was found) are not shown. ==2304779== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2304779== ==2304779== Use --track-origins=yes to see where uninitialised values come from ==2304779== For lists of detected and suppressed errors, rerun with: -s ==2304779== ERROR SUMMARY: 7 errors from 7 contexts (suppressed: 33 from 33)