==2665632== Memcheck, a memory error detector ==2665632== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2665632== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2665632== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestEdge -malloc_debug -malloc_dump -memory_info ==2665632== Parent PID: 2665171 ==2665632== ==2665632== WARNING: pwritev(vector[...]) is an obsolete suppression line not supported in valgrind 3.15 or later. ==2665632== You should replace [...] by a specific index such as [0] or [1] or [2] or similar ==2665632== ==2665632== Syscall param socketcall.getsockopt(optlen) points to uninitialised byte(s) ==2665632== at 0x7E7079E: getsockopt_syscall (getsockopt.c:29) ==2665632== by 0x7E7079E: getsockopt (getsockopt.c:94) ==2665632== by 0x107C4157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2665632== by 0x107CBA1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2665632== by 0x107D2DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2665632== by 0x106D23C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2665632== by 0x1064BE4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==2665632== by 0xFE0AE6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==2665632== by 0xB74E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2665632== by 0x776A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2665632== by 0x7703D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2665632== by 0x63FAD38: PetscInitialize (pinit.c:924) ==2665632== by 0x626A58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2665632== by 0x626A5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2665632== by 0x171B4D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2665632== by 0x16A863: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2665632== by 0x16DD4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2665632== by 0x16DBEA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2665632== by 0x16E281: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2665632== by 0x168B50: main (TestEdge.cpp:19) ==2665632== Address 0x1ffeffdfbc is on thread 1's stack ==2665632== in frame #2, created by pmix_ptl_base_make_connection (???:) ==2665632== { Memcheck:Param socketcall.getsockopt(optlen) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2665632== Syscall param socketcall.getsockopt(optlen_out) points to uninitialised byte(s) ==2665632== at 0x7E7079E: getsockopt_syscall (getsockopt.c:29) ==2665632== by 0x7E7079E: getsockopt (getsockopt.c:94) ==2665632== by 0x107C4157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2665632== by 0x107CBA1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2665632== by 0x107D2DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2665632== by 0x106D23C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2665632== by 0x1064BE4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==2665632== by 0xFE0AE6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==2665632== by 0xB74E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2665632== by 0x776A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2665632== by 0x7703D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2665632== by 0x63FAD38: PetscInitialize (pinit.c:924) ==2665632== by 0x626A58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2665632== by 0x626A5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2665632== by 0x171B4D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2665632== by 0x16A863: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2665632== by 0x16DD4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2665632== by 0x16DBEA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2665632== by 0x16E281: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2665632== by 0x168B50: main (TestEdge.cpp:19) ==2665632== Address 0x1ffeffdfbc is on thread 1's stack ==2665632== in frame #2, created by pmix_ptl_base_make_connection (???:) ==2665632== { Memcheck:Param socketcall.getsockopt(optlen_out) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2665632== Syscall param setsockopt(optlen) contains uninitialised byte(s) ==2665632== at 0x7E70C7E: setsockopt_syscall (setsockopt.c:29) ==2665632== by 0x7E70C7E: setsockopt (setsockopt.c:95) ==2665632== by 0x107CBBA9: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2665632== by 0x107D2DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2665632== by 0x106D23C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2665632== by 0x1064BE4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==2665632== by 0xFE0AE6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==2665632== by 0xB74E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2665632== by 0x776A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2665632== by 0x7703D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2665632== by 0x63FAD38: PetscInitialize (pinit.c:924) ==2665632== by 0x626A58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2665632== by 0x626A5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2665632== by 0x171B4D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2665632== by 0x16A863: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2665632== by 0x16DD4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2665632== by 0x16DBEA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2665632== by 0x16E281: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2665632== by 0x168B50: main (TestEdge.cpp:19) ==2665632== { Memcheck:Param setsockopt(optlen) fun:setsockopt_syscall fun:setsockopt fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2665632== ==2665632== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2665632== Open file descriptor 12: ==2665632== at 0x7E5E22D: pipe (pipe.c:29) ==2665632== by 0xFE0B07D: ??? ==2665632== by 0xB74E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2665632== by 0x776A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2665632== by 0x7703D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2665632== by 0x63FAD38: PetscInitialize (pinit.c:924) ==2665632== by 0x626A58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2665632== by 0x626A5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2665632== by 0x171B4D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2665632== by 0x16A863: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2665632== by 0x16DD4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2665632== by 0x16DBEA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2665632== by 0x16E281: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2665632== by 0x168B50: main (TestEdge.cpp:19) ==2665632== ==2665632== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2665632== at 0x7E62BCC: __open_nocancel (open64_nocancel.c:39) ==2665632== by 0x7DE6C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2665632== by 0x62A2822: ??? ==2665632== by 0x62A296F: ??? ==2665632== by 0xB7F36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2665632== by 0xB7F3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2665632== by 0xB7A9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2665632== by 0xB74E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2665632== by 0x776A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2665632== by 0x7703D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2665632== by 0x63FAD38: PetscInitialize (pinit.c:924) ==2665632== by 0x626A58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2665632== by 0x626A5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2665632== by 0x171B4D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2665632== by 0x16A863: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2665632== by 0x16DD4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2665632== by 0x16DBEA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2665632== by 0x16E281: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2665632== by 0x168B50: main (TestEdge.cpp:19) ==2665632== ==2665632== Open file descriptor 117: ==2665632== ==2665632== ==2665632== Open file descriptor 110: ==2665632== ==2665632== ==2665632== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEdge_valgrind.txt ==2665632== ==2665632== ==2665632== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2665632== ==2665632== ==2665632== ==2665632== HEAP SUMMARY: ==2665632== in use at exit: 708,343 bytes in 9,478 blocks ==2665632== total heap usage: 50,186 allocs, 40,708 frees, 1,353,476,224 bytes allocated ==2665632== ==2665632== 96 (80 direct, 16 indirect) bytes in 1 blocks are definitely lost in loss record 50 of 112 ==2665632== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2665632== by 0x171DB1: TestEdge::TestEdgeInitialisation() (TestEdge.hpp:66) ==2665632== by 0x17B9FC: TestDescription_TestEdge_TestEdgeInitialisation::runTest() (TestEdge.cpp:31) ==2665632== by 0x169E5E: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==2665632== by 0x16DFF8: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==2665632== by 0x16DEDD: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==2665632== by 0x16DD83: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==2665632== by 0x16DBEA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2665632== by 0x16E281: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2665632== by 0x168B50: main (TestEdge.cpp:19) ==2665632== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN8TestEdge22TestEdgeInitialisationEv fun:_ZN47TestDescription_TestEdge_TestEdgeInitialisation7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2665632== 96 (80 direct, 16 indirect) bytes in 1 blocks are definitely lost in loss record 51 of 112 ==2665632== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2665632== by 0x174CFB: TestEdge::TestEdgeProperties() (TestEdge.hpp:153) ==2665632== by 0x17BA66: TestDescription_TestEdge_TestEdgeProperties::runTest() (TestEdge.cpp:37) ==2665632== by 0x169E5E: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==2665632== by 0x16DFF8: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==2665632== by 0x16DEDD: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==2665632== by 0x16DD83: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==2665632== by 0x16DBEA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2665632== by 0x16E281: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2665632== by 0x168B50: main (TestEdge.cpp:19) ==2665632== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN8TestEdge18TestEdgePropertiesEv fun:_ZN43TestDescription_TestEdge_TestEdgeProperties7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2665632== 192 bytes in 1 blocks are definitely lost in loss record 74 of 112 ==2665632== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2665632== by 0x1A9089: boost::archive::detail::heap_allocation >::doesnt_have_new_operator::invoke_new() (iserializer.hpp:241) ==2665632== by 0x1A8CBE: boost::archive::detail::heap_allocation >::invoke_new() (iserializer.hpp:255) ==2665632== by 0x1A8392: boost::archive::detail::heap_allocation >::heap_allocation() (iserializer.hpp:268) ==2665632== by 0x1A6D17: boost::archive::detail::pointer_iserializer >::heap_allocation() const (iserializer.hpp:293) ==2665632== by 0x62DE830: ??? (in /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0) ==2665632== by 0x18DBCB: void boost::archive::detail::load_pointer_type::invoke*>(boost::archive::text_iarchive&, Node<2u>*&) (iserializer.hpp:541) ==2665632== by 0x18D5BC: void boost::archive::load*>(boost::archive::text_iarchive&, Node<2u>*&) (iserializer.hpp:624) ==2665632== by 0x18D125: void boost::archive::detail::common_iarchive::load_override*>(Node<2u>*&) (common_iarchive.hpp:67) ==2665632== by 0x18CBF2: void boost::archive::basic_text_iarchive::load_override*>(Node<2u>*&) (basic_text_iarchive.hpp:70) ==2665632== by 0x18C612: void boost::archive::text_iarchive_impl::load_override*>(Node<2u>*&) (text_iarchive.hpp:82) ==2665632== by 0x18C025: boost::archive::text_iarchive& boost::archive::detail::interface_iarchive::operator>>*>(Node<2u>*&) (interface_iarchive.hpp:68) ==2665632== by 0x18B957: boost::archive::text_iarchive& boost::archive::detail::interface_iarchive::operator&*>(Node<2u>*&) (interface_iarchive.hpp:75) ==2665632== by 0x18B263: void boost::serialization::load_construct_data(boost::archive::text_iarchive&, Edge<2u>*, unsigned int) (Edge.hpp:268) ==2665632== by 0x18A955: void boost::serialization::load_construct_data_adl >(boost::archive::text_iarchive&, Edge<2u>*, unsigned int) (serialization.hpp:140) ==2665632== by 0x189F55: boost::archive::detail::pointer_iserializer >::load_object_ptr(boost::archive::detail::basic_iarchive&, void*, unsigned int) const (iserializer.hpp:340) ==2665632== by 0x62DE9F4: ??? (in /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0) ==2665632== by 0x1875F4: void boost::archive::detail::load_pointer_type::invoke*>(boost::archive::text_iarchive&, Edge<2u>*&) (iserializer.hpp:541) ==2665632== by 0x18650A: void boost::archive::load*>(boost::archive::text_iarchive&, Edge<2u>*&) (iserializer.hpp:624) ==2665632== by 0x184D77: void boost::archive::detail::common_iarchive::load_override*>(Edge<2u>*&) (common_iarchive.hpp:67) ==2665632== by 0x182EFC: void boost::archive::basic_text_iarchive::load_override*>(Edge<2u>*&) (basic_text_iarchive.hpp:70) ==2665632== by 0x1803E8: void boost::archive::text_iarchive_impl::load_override*>(Edge<2u>*&) (text_iarchive.hpp:82) ==2665632== by 0x17D5F7: boost::archive::text_iarchive& boost::archive::detail::interface_iarchive::operator>>*>(Edge<2u>*&) (interface_iarchive.hpp:68) ==2665632== by 0x1771AE: TestEdge::TestArchiveEdge() (TestEdge.hpp:242) ==2665632== by 0x17BAD0: TestDescription_TestEdge_TestArchiveEdge::runTest() (TestEdge.cpp:43) ==2665632== by 0x169E5E: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==2665632== by 0x16DFF8: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==2665632== by 0x16DEDD: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==2665632== by 0x16DD83: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==2665632== by 0x16DBEA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2665632== by 0x16E281: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2665632== by 0x168B50: main (TestEdge.cpp:19) ==2665632== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN5boost7archive6detail15heap_allocationI4NodeILj2EEE24doesnt_have_new_operator10invoke_newEv fun:_ZN5boost7archive6detail15heap_allocationI4NodeILj2EEE10invoke_newEv fun:_ZN5boost7archive6detail15heap_allocationI4NodeILj2EEEC1Ev fun:_ZNK5boost7archive6detail19pointer_iserializerINS0_13text_iarchiveE4NodeILj2EEE15heap_allocationEv obj:/usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0 fun:_ZN5boost7archive6detail17load_pointer_typeINS0_13text_iarchiveEE6invokeIP4NodeILj2EEEEvRS3_RT_ fun:_ZN5boost7archive4loadINS0_13text_iarchiveEP4NodeILj2EEEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_iarchiveINS0_13text_iarchiveEE13load_overrideIP4NodeILj2EEEEvRT_ fun:_ZN5boost7archive19basic_text_iarchiveINS0_13text_iarchiveEE13load_overrideIP4NodeILj2EEEEvRT_ fun:_ZN5boost7archive18text_iarchive_implINS0_13text_iarchiveEE13load_overrideIP4NodeILj2EEEEvRT_ fun:_ZN5boost7archive6detail18interface_iarchiveINS0_13text_iarchiveEErsIP4NodeILj2EEEERS3_RT_ fun:_ZN5boost7archive6detail18interface_iarchiveINS0_13text_iarchiveEEanIP4NodeILj2EEEERS3_RT_ fun:_ZN5boost13serialization19load_construct_dataINS_7archive13text_iarchiveELj2EEEvRT_P4EdgeIXT0_EEj fun:_ZN5boost13serialization23load_construct_data_adlINS_7archive13text_iarchiveE4EdgeILj2EEEEvRT_PT0_j fun:_ZNK5boost7archive6detail19pointer_iserializerINS0_13text_iarchiveE4EdgeILj2EEE15load_object_ptrERNS1_14basic_iarchiveEPvj obj:/usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0 fun:_ZN5boost7archive6detail17load_pointer_typeINS0_13text_iarchiveEE6invokeIP4EdgeILj2EEEEvRS3_RT_ fun:_ZN5boost7archive4loadINS0_13text_iarchiveEP4EdgeILj2EEEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_iarchiveINS0_13text_iarchiveEE13load_overrideIP4EdgeILj2EEEEvRT_ fun:_ZN5boost7archive19basic_text_iarchiveINS0_13text_iarchiveEE13load_overrideIP4EdgeILj2EEEEvRT_ fun:_ZN5boost7archive18text_iarchive_implINS0_13text_iarchiveEE13load_overrideIP4EdgeILj2EEEEvRT_ fun:_ZN5boost7archive6detail18interface_iarchiveINS0_13text_iarchiveEErsIP4EdgeILj2EEEERS3_RT_ fun:_ZN8TestEdge15TestArchiveEdgeEv fun:_ZN40TestDescription_TestEdge_TestArchiveEdge7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2665632== 192 bytes in 1 blocks are definitely lost in loss record 75 of 112 ==2665632== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2665632== by 0x1A9089: boost::archive::detail::heap_allocation >::doesnt_have_new_operator::invoke_new() (iserializer.hpp:241) ==2665632== by 0x1A8CBE: boost::archive::detail::heap_allocation >::invoke_new() (iserializer.hpp:255) ==2665632== by 0x1A8392: boost::archive::detail::heap_allocation >::heap_allocation() (iserializer.hpp:268) ==2665632== by 0x1A6D17: boost::archive::detail::pointer_iserializer >::heap_allocation() const (iserializer.hpp:293) ==2665632== by 0x62DE830: ??? (in /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0) ==2665632== by 0x18DBCB: void boost::archive::detail::load_pointer_type::invoke*>(boost::archive::text_iarchive&, Node<2u>*&) (iserializer.hpp:541) ==2665632== by 0x18D5BC: void boost::archive::load*>(boost::archive::text_iarchive&, Node<2u>*&) (iserializer.hpp:624) ==2665632== by 0x18D125: void boost::archive::detail::common_iarchive::load_override*>(Node<2u>*&) (common_iarchive.hpp:67) ==2665632== by 0x18CBF2: void boost::archive::basic_text_iarchive::load_override*>(Node<2u>*&) (basic_text_iarchive.hpp:70) ==2665632== by 0x18C612: void boost::archive::text_iarchive_impl::load_override*>(Node<2u>*&) (text_iarchive.hpp:82) ==2665632== by 0x18C025: boost::archive::text_iarchive& boost::archive::detail::interface_iarchive::operator>>*>(Node<2u>*&) (interface_iarchive.hpp:68) ==2665632== by 0x18B957: boost::archive::text_iarchive& boost::archive::detail::interface_iarchive::operator&*>(Node<2u>*&) (interface_iarchive.hpp:75) ==2665632== by 0x18B276: void boost::serialization::load_construct_data(boost::archive::text_iarchive&, Edge<2u>*, unsigned int) (Edge.hpp:270) ==2665632== by 0x18A955: void boost::serialization::load_construct_data_adl >(boost::archive::text_iarchive&, Edge<2u>*, unsigned int) (serialization.hpp:140) ==2665632== by 0x189F55: boost::archive::detail::pointer_iserializer >::load_object_ptr(boost::archive::detail::basic_iarchive&, void*, unsigned int) const (iserializer.hpp:340) ==2665632== by 0x62DE9F4: ??? (in /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0) ==2665632== by 0x1875F4: void boost::archive::detail::load_pointer_type::invoke*>(boost::archive::text_iarchive&, Edge<2u>*&) (iserializer.hpp:541) ==2665632== by 0x18650A: void boost::archive::load*>(boost::archive::text_iarchive&, Edge<2u>*&) (iserializer.hpp:624) ==2665632== by 0x184D77: void boost::archive::detail::common_iarchive::load_override*>(Edge<2u>*&) (common_iarchive.hpp:67) ==2665632== by 0x182EFC: void boost::archive::basic_text_iarchive::load_override*>(Edge<2u>*&) (basic_text_iarchive.hpp:70) ==2665632== by 0x1803E8: void boost::archive::text_iarchive_impl::load_override*>(Edge<2u>*&) (text_iarchive.hpp:82) ==2665632== by 0x17D5F7: boost::archive::text_iarchive& boost::archive::detail::interface_iarchive::operator>>*>(Edge<2u>*&) (interface_iarchive.hpp:68) ==2665632== by 0x1771AE: TestEdge::TestArchiveEdge() (TestEdge.hpp:242) ==2665632== by 0x17BAD0: TestDescription_TestEdge_TestArchiveEdge::runTest() (TestEdge.cpp:43) ==2665632== by 0x169E5E: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==2665632== by 0x16DFF8: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==2665632== by 0x16DEDD: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==2665632== by 0x16DD83: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==2665632== by 0x16DBEA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2665632== by 0x16E281: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2665632== by 0x168B50: main (TestEdge.cpp:19) ==2665632== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN5boost7archive6detail15heap_allocationI4NodeILj2EEE24doesnt_have_new_operator10invoke_newEv fun:_ZN5boost7archive6detail15heap_allocationI4NodeILj2EEE10invoke_newEv fun:_ZN5boost7archive6detail15heap_allocationI4NodeILj2EEEC1Ev fun:_ZNK5boost7archive6detail19pointer_iserializerINS0_13text_iarchiveE4NodeILj2EEE15heap_allocationEv obj:/usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0 fun:_ZN5boost7archive6detail17load_pointer_typeINS0_13text_iarchiveEE6invokeIP4NodeILj2EEEEvRS3_RT_ fun:_ZN5boost7archive4loadINS0_13text_iarchiveEP4NodeILj2EEEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_iarchiveINS0_13text_iarchiveEE13load_overrideIP4NodeILj2EEEEvRT_ fun:_ZN5boost7archive19basic_text_iarchiveINS0_13text_iarchiveEE13load_overrideIP4NodeILj2EEEEvRT_ fun:_ZN5boost7archive18text_iarchive_implINS0_13text_iarchiveEE13load_overrideIP4NodeILj2EEEEvRT_ fun:_ZN5boost7archive6detail18interface_iarchiveINS0_13text_iarchiveEErsIP4NodeILj2EEEERS3_RT_ fun:_ZN5boost7archive6detail18interface_iarchiveINS0_13text_iarchiveEEanIP4NodeILj2EEEERS3_RT_ fun:_ZN5boost13serialization19load_construct_dataINS_7archive13text_iarchiveELj2EEEvRT_P4EdgeIXT0_EEj fun:_ZN5boost13serialization23load_construct_data_adlINS_7archive13text_iarchiveE4EdgeILj2EEEEvRT_PT0_j fun:_ZNK5boost7archive6detail19pointer_iserializerINS0_13text_iarchiveE4EdgeILj2EEE15load_object_ptrERNS1_14basic_iarchiveEPvj obj:/usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0 fun:_ZN5boost7archive6detail17load_pointer_typeINS0_13text_iarchiveEE6invokeIP4EdgeILj2EEEEvRS3_RT_ fun:_ZN5boost7archive4loadINS0_13text_iarchiveEP4EdgeILj2EEEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_iarchiveINS0_13text_iarchiveEE13load_overrideIP4EdgeILj2EEEEvRT_ fun:_ZN5boost7archive19basic_text_iarchiveINS0_13text_iarchiveEE13load_overrideIP4EdgeILj2EEEEvRT_ fun:_ZN5boost7archive18text_iarchive_implINS0_13text_iarchiveEE13load_overrideIP4EdgeILj2EEEEvRT_ fun:_ZN5boost7archive6detail18interface_iarchiveINS0_13text_iarchiveEErsIP4EdgeILj2EEEERS3_RT_ fun:_ZN8TestEdge15TestArchiveEdgeEv fun:_ZN40TestDescription_TestEdge_TestArchiveEdge7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2665632== 552 bytes in 1 blocks are definitely lost in loss record 86 of 112 ==2665632== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2665632== by 0x106D9C13: ??? ==2665632== by 0x106DA22C: ??? ==2665632== by 0x1064D4B7: ??? ==2665632== by 0x76D015A: ompi_proc_complete_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2665632== by 0x776AA97: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2665632== by 0x7703D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2665632== by 0x63FAD38: PetscInitialize (pinit.c:924) ==2665632== by 0x626A58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2665632== by 0x626A5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2665632== by 0x171B4D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2665632== by 0x16A863: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2665632== by 0x16DD4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2665632== by 0x16DBEA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2665632== by 0x16E281: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2665632== by 0x168B50: main (TestEdge.cpp:19) ==2665632== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* fun:ompi_proc_complete_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2665632== 3,456 (304 direct, 3,152 indirect) bytes in 1 blocks are definitely lost in loss record 107 of 112 ==2665632== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2665632== by 0x172593: TestEdge::TestEdgeInitialisation() (TestEdge.hpp:103) ==2665632== by 0x17B9FC: TestDescription_TestEdge_TestEdgeInitialisation::runTest() (TestEdge.cpp:31) ==2665632== by 0x169E5E: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==2665632== by 0x16DFF8: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==2665632== by 0x16DEDD: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==2665632== by 0x16DD83: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==2665632== by 0x16DBEA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2665632== by 0x16E281: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2665632== by 0x168B50: main (TestEdge.cpp:19) ==2665632== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN8TestEdge22TestEdgeInitialisationEv fun:_ZN47TestDescription_TestEdge_TestEdgeInitialisation7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2665632== 3,664 (144 direct, 3,520 indirect) bytes in 1 blocks are definitely lost in loss record 108 of 112 ==2665632== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2665632== by 0x17548E: TestEdge::TestEdgeProperties() (TestEdge.hpp:196) ==2665632== by 0x17BA66: TestDescription_TestEdge_TestEdgeProperties::runTest() (TestEdge.cpp:37) ==2665632== by 0x169E5E: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==2665632== by 0x16DFF8: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==2665632== by 0x16DEDD: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==2665632== by 0x16DD83: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==2665632== by 0x16DBEA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2665632== by 0x16E281: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2665632== by 0x168B50: main (TestEdge.cpp:19) ==2665632== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN8TestEdge18TestEdgePropertiesEv fun:_ZN43TestDescription_TestEdge_TestEdgeProperties7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2665632== 685,285 (136 direct, 685,149 indirect) bytes in 1 blocks are definitely lost in loss record 112 of 112 ==2665632== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2665632== by 0x1184C74E: ??? ==2665632== by 0x1184CE0B: ??? ==2665632== by 0x1184FF56: ??? ==2665632== by 0x1184565D: ??? ==2665632== by 0x11845FA3: ??? ==2665632== by 0xB85FF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==2665632== by 0xB83BAE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==2665632== by 0xB7ECCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2665632== by 0xB719EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2665632== by 0xFE0BF03: ??? ==2665632== by 0xB74E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2665632== by 0x776A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2665632== by 0x7703D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2665632== by 0x63FAD38: PetscInitialize (pinit.c:924) ==2665632== by 0x626A58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2665632== by 0x626A5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2665632== by 0x171B4D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2665632== by 0x16A863: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2665632== by 0x16DD4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2665632== by 0x16DBEA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2665632== by 0x16E281: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2665632== by 0x168B50: main (TestEdge.cpp:19) ==2665632== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* obj:* obj:* obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2 fun:hwloc_topology_load fun:opal_hwloc_base_get_topology fun:orte_ess_base_proc_binding obj:* fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2665632== LEAK SUMMARY: ==2665632== definitely lost: 1,680 bytes in 8 blocks ==2665632== indirectly lost: 8,464 bytes in 111 blocks ==2665632== possibly lost: 0 bytes in 0 blocks ==2665632== still reachable: 1,531 bytes in 6 blocks ==2665632== suppressed: 696,668 bytes in 9,353 blocks ==2665632== Reachable blocks (those to which a pointer was found) are not shown. ==2665632== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2665632== ==2665632== Use --track-origins=yes to see where uninitialised values come from ==2665632== For lists of detected and suppressed errors, rerun with: -s ==2665632== ERROR SUMMARY: 11 errors from 11 contexts (suppressed: 29 from 29)