==2685152== Memcheck, a memory error detector ==2685152== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2685152== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2685152== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOdeBasedCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==2685152== Parent PID: 2665171 ==2685152== ==2685152== WARNING: pwritev(vector[...]) is an obsolete suppression line not supported in valgrind 3.15 or later. ==2685152== You should replace [...] by a specific index such as [0] or [1] or [2] or similar ==2685152== ==2685152== Syscall param socketcall.getsockopt(optlen) points to uninitialised byte(s) ==2685152== at 0x100D279E: getsockopt_syscall (getsockopt.c:29) ==2685152== by 0x100D279E: getsockopt (getsockopt.c:94) ==2685152== by 0x1ABAB157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2685152== by 0x1ABB2A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2685152== by 0x1ABB9DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2685152== by 0x1AAB93C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2685152== by 0x1AA32E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==2685152== by 0x1A1F1E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==2685152== by 0x147934CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2685152== by 0xF9CA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2685152== by 0xF963D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2685152== by 0xE65AD38: PetscInitialize (pinit.c:924) ==2685152== by 0xE4CC58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2685152== by 0xE4CC5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2685152== by 0x19DA6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2685152== by 0x1941B7: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2685152== by 0x19785C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2685152== by 0x1976FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2685152== by 0x197D93: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2685152== by 0x18FFA0: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==2685152== Address 0x1ffeffdf7c is on thread 1's stack ==2685152== in frame #2, created by pmix_ptl_base_make_connection (???:) ==2685152== { Memcheck:Param socketcall.getsockopt(optlen) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2685152== Syscall param socketcall.getsockopt(optlen_out) points to uninitialised byte(s) ==2685152== at 0x100D279E: getsockopt_syscall (getsockopt.c:29) ==2685152== by 0x100D279E: getsockopt (getsockopt.c:94) ==2685152== by 0x1ABAB157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2685152== by 0x1ABB2A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2685152== by 0x1ABB9DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2685152== by 0x1AAB93C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2685152== by 0x1AA32E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==2685152== by 0x1A1F1E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==2685152== by 0x147934CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2685152== by 0xF9CA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2685152== by 0xF963D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2685152== by 0xE65AD38: PetscInitialize (pinit.c:924) ==2685152== by 0xE4CC58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2685152== by 0xE4CC5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2685152== by 0x19DA6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2685152== by 0x1941B7: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2685152== by 0x19785C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2685152== by 0x1976FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2685152== by 0x197D93: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2685152== by 0x18FFA0: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==2685152== Address 0x1ffeffdf7c is on thread 1's stack ==2685152== in frame #2, created by pmix_ptl_base_make_connection (???:) ==2685152== { Memcheck:Param socketcall.getsockopt(optlen_out) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2685152== Syscall param setsockopt(optlen) contains uninitialised byte(s) ==2685152== at 0x100D2C7E: setsockopt_syscall (setsockopt.c:29) ==2685152== by 0x100D2C7E: setsockopt (setsockopt.c:95) ==2685152== by 0x1ABB2BA9: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2685152== by 0x1ABB9DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2685152== by 0x1AAB93C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2685152== by 0x1AA32E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==2685152== by 0x1A1F1E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==2685152== by 0x147934CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2685152== by 0xF9CA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2685152== by 0xF963D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2685152== by 0xE65AD38: PetscInitialize (pinit.c:924) ==2685152== by 0xE4CC58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2685152== by 0xE4CC5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2685152== by 0x19DA6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2685152== by 0x1941B7: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2685152== by 0x19785C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2685152== by 0x1976FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2685152== by 0x197D93: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2685152== by 0x18FFA0: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==2685152== { Memcheck:Param setsockopt(optlen) fun:setsockopt_syscall fun:setsockopt fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2685152== Use of uninitialised value of size 8 ==2685152== at 0xFB6A81B: ??? (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==2685152== by 0xFB6AF99: std::ostreambuf_iterator > std::num_put > >::_M_insert_int(std::ostreambuf_iterator >, std::ios_base&, char, unsigned long) const (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==2685152== by 0xFB79399: std::ostream& std::ostream::_M_insert(unsigned long) (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==2685152== by 0x1D74BA: void boost::archive::basic_text_oprimitive::save_impl(unsigned int const&, mpl_::bool_&) (basic_text_oprimitive.hpp:130) ==2685152== by 0x1D6F79: void boost::archive::basic_text_oprimitive::save(unsigned int const&) (basic_text_oprimitive.hpp:180) ==2685152== by 0x1D69AC: void boost::archive::text_oarchive_impl::save(unsigned int const&) (text_oarchive.hpp:65) ==2685152== by 0x1D73DD: void boost::archive::save_access::save_primitive(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:93) ==2685152== by 0x1D6E21: void boost::archive::detail::save_non_pointer_type::save_primitive::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:237) ==2685152== by 0x1D68E9: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:315) ==2685152== by 0x1D6311: void boost::archive::save(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:539) ==2685152== by 0x1D5EAD: void boost::archive::detail::common_oarchive::save_override(unsigned int const&) (common_oarchive.hpp:71) ==2685152== by 0x1D5BCA: void boost::archive::basic_text_oarchive::save_override(unsigned int const&) (basic_text_oarchive.hpp:83) ==2685152== by 0x1D5757: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (unsigned int const&) (interface_oarchive.hpp:70) ==2685152== by 0x1D542B: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(unsigned int const&) (interface_oarchive.hpp:77) ==2685152== by 0xB53A5ED: void AbstractSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (AbstractSrnModel.hpp:83) ==2685152== by 0xB539772: void boost::serialization::access::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (access.hpp:116) ==2685152== by 0xB53848C: void boost::serialization::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:68) ==2685152== by 0xB537682: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:118) ==2685152== by 0xB536FAD: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==2685152== by 0xB536A3D: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:258) ==2685152== by 0xB536607: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:315) ==2685152== by 0xB5361D8: void boost::archive::save(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:539) ==2685152== by 0xB535E77: void boost::archive::detail::common_oarchive::save_override(AbstractSrnModel const&) (common_oarchive.hpp:71) ==2685152== by 0xB535B06: void boost::archive::basic_text_oarchive::save_override(AbstractSrnModel const&) (basic_text_oarchive.hpp:83) ==2685152== by 0xB5356E1: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (AbstractSrnModel const&) (interface_oarchive.hpp:70) ==2685152== by 0xB53536B: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(AbstractSrnModel const&) (interface_oarchive.hpp:77) ==2685152== by 0xB656156: void NullSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (NullSrnModel.hpp:67) ==2685152== by 0xB655DAE: void boost::serialization::access::serialize(boost::archive::text_oarchive&, NullSrnModel&, unsigned int) (access.hpp:116) ==2685152== by 0xB65573E: void boost::serialization::serialize(boost::archive::text_oarchive&, NullSrnModel&, unsigned int) (serialization.hpp:68) ==2685152== by 0xB654F8E: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, NullSrnModel&, unsigned int) (serialization.hpp:118) ==2685152== by 0xB654915: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==2685152== by 0xB656ED5: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, NullSrnModel const&) (oserializer.hpp:258) ==2685152== by 0xB656DBA: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, NullSrnModel const&) (oserializer.hpp:315) ==2685152== by 0xB656BDE: void boost::archive::save(boost::archive::text_oarchive&, NullSrnModel const&) (oserializer.hpp:539) ==2685152== by 0xB656A25: void boost::archive::detail::common_oarchive::save_override(NullSrnModel const&) (common_oarchive.hpp:71) ==2685152== by 0xB656840: void boost::archive::basic_text_oarchive::save_override(NullSrnModel const&) (basic_text_oarchive.hpp:83) ==2685152== by 0xB656735: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (NullSrnModel const&) (interface_oarchive.hpp:70) ==2685152== by 0xB6565B4: void boost::serialization::save(boost::archive::text_oarchive&, boost::serialization::nvp const&, unsigned int) (nvp.hpp:48) ==2685152== by 0xB65646A: boost::serialization::free_saver >::invoke(boost::archive::text_oarchive&, boost::serialization::nvp const&, unsigned int) (split_free.hpp:45) ==2685152== by 0xB65635C: void boost::serialization::split_free >(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (split_free.hpp:74) ==2685152== by 0xB656186: void boost::serialization::serialize(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (nvp.hpp:65) ==2685152== by 0xB655E0B: void boost::serialization::serialize_adl >(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (serialization.hpp:118) ==2685152== by 0xB655778: void boost::archive::detail::save_non_pointer_type::save_only::invoke >(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:246) ==2685152== by 0xB654FD1: void boost::archive::detail::save_non_pointer_type::invoke >(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:315) ==2685152== by 0xB654957: void boost::archive::save const>(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:539) ==2685152== by 0xB6544FF: void boost::archive::detail::common_oarchive::save_override const>(boost::serialization::nvp const&) (common_oarchive.hpp:71) ==2685152== by 0xB653F52: void boost::archive::basic_text_oarchive::save_override const>(boost::serialization::nvp const&) (basic_text_oarchive.hpp:83) ==2685152== by 0xB6538ED: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< >(boost::serialization::nvp const&) (interface_oarchive.hpp:70) ==2685152== by 0xB653358: boost::archive::detail::pointer_oserializer::save_object_ptr(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:206) ==2685152== by 0xE53C389: ??? (in /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0) ==2685152== { Memcheck:Value8 obj:/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30 fun:_ZNKSt7num_putIcSt19ostreambuf_iteratorIcSt11char_traitsIcEEE13_M_insert_intImEES3_S3_RSt8ios_basecT_ fun:_ZNSo9_M_insertImEERSoT_ fun:_ZN5boost7archive21basic_text_oprimitiveISoE9save_implIjEEvRKT_RN4mpl_5bool_ILb0EEE fun:_ZN5boost7archive21basic_text_oprimitiveISoE4saveIjEEvRKT_ fun:_ZN5boost7archive18text_oarchive_implINS0_13text_oarchiveEE4saveIjEEvRKT_ fun:_ZN5boost7archive11save_access14save_primitiveINS0_13text_oarchiveEjEEvRT_RKT0_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE14save_primitive6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEKjEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsIjEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanIjEERS3_RKT_ fun:_ZN16AbstractSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE16AbstractSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK16AbstractSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI16AbstractSrnModelEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanI16AbstractSrnModelEERS3_RKT_ fun:_ZN12NullSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE12NullSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI12NullSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI12NullSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK12NullSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK12NullSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK12NullSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI12NullSrnModelEERS3_RKT_ fun:_ZN5boost13serialization4saveINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RKNS0_3nvpIT0_EEj fun:_ZN5boost13serialization10free_saverINS_7archive13text_oarchiveENS0_3nvpI12NullSrnModelEEE6invokeERS3_RKS6_j fun:_ZN5boost13serialization10split_freeINS_7archive13text_oarchiveENS0_3nvpI12NullSrnModelEEEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RNS0_3nvpIT0_EEj fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveENS0_3nvpI12NullSrnModelEEEEvRT_RT0_j fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE9save_only6invokeINS_13serialization3nvpI12NullSrnModelEEEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeINS_13serialization3nvpI12NullSrnModelEEEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEKNS_13serialization3nvpI12NullSrnModelEEEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIKNS_13serialization3nvpI12NullSrnModelEEEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIKNS_13serialization3nvpI12NullSrnModelEEEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsINS_13serialization3nvpI12NullSrnModelEEEERS3_RKT_ fun:_ZNK5boost7archive6detail19pointer_oserializerINS0_13text_oarchiveE12NullSrnModelE15save_object_ptrERNS1_14basic_oarchiveEPKv obj:/usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0 } ==2685152== Conditional jump or move depends on uninitialised value(s) ==2685152== at 0xFB6A82D: ??? (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==2685152== by 0xFB6AF99: std::ostreambuf_iterator > std::num_put > >::_M_insert_int(std::ostreambuf_iterator >, std::ios_base&, char, unsigned long) const (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==2685152== by 0xFB79399: std::ostream& std::ostream::_M_insert(unsigned long) (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==2685152== by 0x1D74BA: void boost::archive::basic_text_oprimitive::save_impl(unsigned int const&, mpl_::bool_&) (basic_text_oprimitive.hpp:130) ==2685152== by 0x1D6F79: void boost::archive::basic_text_oprimitive::save(unsigned int const&) (basic_text_oprimitive.hpp:180) ==2685152== by 0x1D69AC: void boost::archive::text_oarchive_impl::save(unsigned int const&) (text_oarchive.hpp:65) ==2685152== by 0x1D73DD: void boost::archive::save_access::save_primitive(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:93) ==2685152== by 0x1D6E21: void boost::archive::detail::save_non_pointer_type::save_primitive::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:237) ==2685152== by 0x1D68E9: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:315) ==2685152== by 0x1D6311: void boost::archive::save(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:539) ==2685152== by 0x1D5EAD: void boost::archive::detail::common_oarchive::save_override(unsigned int const&) (common_oarchive.hpp:71) ==2685152== by 0x1D5BCA: void boost::archive::basic_text_oarchive::save_override(unsigned int const&) (basic_text_oarchive.hpp:83) ==2685152== by 0x1D5757: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (unsigned int const&) (interface_oarchive.hpp:70) ==2685152== by 0x1D542B: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(unsigned int const&) (interface_oarchive.hpp:77) ==2685152== by 0xB53A5ED: void AbstractSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (AbstractSrnModel.hpp:83) ==2685152== by 0xB539772: void boost::serialization::access::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (access.hpp:116) ==2685152== by 0xB53848C: void boost::serialization::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:68) ==2685152== by 0xB537682: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:118) ==2685152== by 0xB536FAD: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==2685152== by 0xB536A3D: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:258) ==2685152== by 0xB536607: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:315) ==2685152== by 0xB5361D8: void boost::archive::save(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:539) ==2685152== by 0xB535E77: void boost::archive::detail::common_oarchive::save_override(AbstractSrnModel const&) (common_oarchive.hpp:71) ==2685152== by 0xB535B06: void boost::archive::basic_text_oarchive::save_override(AbstractSrnModel const&) (basic_text_oarchive.hpp:83) ==2685152== by 0xB5356E1: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (AbstractSrnModel const&) (interface_oarchive.hpp:70) ==2685152== by 0xB53536B: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(AbstractSrnModel const&) (interface_oarchive.hpp:77) ==2685152== by 0xB656156: void NullSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (NullSrnModel.hpp:67) ==2685152== by 0xB655DAE: void boost::serialization::access::serialize(boost::archive::text_oarchive&, NullSrnModel&, unsigned int) (access.hpp:116) ==2685152== by 0xB65573E: void boost::serialization::serialize(boost::archive::text_oarchive&, NullSrnModel&, unsigned int) (serialization.hpp:68) ==2685152== by 0xB654F8E: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, NullSrnModel&, unsigned int) (serialization.hpp:118) ==2685152== by 0xB654915: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==2685152== by 0xB656ED5: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, NullSrnModel const&) (oserializer.hpp:258) ==2685152== by 0xB656DBA: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, NullSrnModel const&) (oserializer.hpp:315) ==2685152== by 0xB656BDE: void boost::archive::save(boost::archive::text_oarchive&, NullSrnModel const&) (oserializer.hpp:539) ==2685152== by 0xB656A25: void boost::archive::detail::common_oarchive::save_override(NullSrnModel const&) (common_oarchive.hpp:71) ==2685152== by 0xB656840: void boost::archive::basic_text_oarchive::save_override(NullSrnModel const&) (basic_text_oarchive.hpp:83) ==2685152== by 0xB656735: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (NullSrnModel const&) (interface_oarchive.hpp:70) ==2685152== by 0xB6565B4: void boost::serialization::save(boost::archive::text_oarchive&, boost::serialization::nvp const&, unsigned int) (nvp.hpp:48) ==2685152== by 0xB65646A: boost::serialization::free_saver >::invoke(boost::archive::text_oarchive&, boost::serialization::nvp const&, unsigned int) (split_free.hpp:45) ==2685152== by 0xB65635C: void boost::serialization::split_free >(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (split_free.hpp:74) ==2685152== by 0xB656186: void boost::serialization::serialize(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (nvp.hpp:65) ==2685152== by 0xB655E0B: void boost::serialization::serialize_adl >(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (serialization.hpp:118) ==2685152== by 0xB655778: void boost::archive::detail::save_non_pointer_type::save_only::invoke >(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:246) ==2685152== by 0xB654FD1: void boost::archive::detail::save_non_pointer_type::invoke >(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:315) ==2685152== by 0xB654957: void boost::archive::save const>(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:539) ==2685152== by 0xB6544FF: void boost::archive::detail::common_oarchive::save_override const>(boost::serialization::nvp const&) (common_oarchive.hpp:71) ==2685152== by 0xB653F52: void boost::archive::basic_text_oarchive::save_override const>(boost::serialization::nvp const&) (basic_text_oarchive.hpp:83) ==2685152== by 0xB6538ED: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< >(boost::serialization::nvp const&) (interface_oarchive.hpp:70) ==2685152== by 0xB653358: boost::archive::detail::pointer_oserializer::save_object_ptr(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:206) ==2685152== by 0xE53C389: ??? (in /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0) ==2685152== { Memcheck:Cond obj:/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30 fun:_ZNKSt7num_putIcSt19ostreambuf_iteratorIcSt11char_traitsIcEEE13_M_insert_intImEES3_S3_RSt8ios_basecT_ fun:_ZNSo9_M_insertImEERSoT_ fun:_ZN5boost7archive21basic_text_oprimitiveISoE9save_implIjEEvRKT_RN4mpl_5bool_ILb0EEE fun:_ZN5boost7archive21basic_text_oprimitiveISoE4saveIjEEvRKT_ fun:_ZN5boost7archive18text_oarchive_implINS0_13text_oarchiveEE4saveIjEEvRKT_ fun:_ZN5boost7archive11save_access14save_primitiveINS0_13text_oarchiveEjEEvRT_RKT0_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE14save_primitive6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEKjEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsIjEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanIjEERS3_RKT_ fun:_ZN16AbstractSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE16AbstractSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK16AbstractSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI16AbstractSrnModelEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanI16AbstractSrnModelEERS3_RKT_ fun:_ZN12NullSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE12NullSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI12NullSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI12NullSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK12NullSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK12NullSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK12NullSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI12NullSrnModelEERS3_RKT_ fun:_ZN5boost13serialization4saveINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RKNS0_3nvpIT0_EEj fun:_ZN5boost13serialization10free_saverINS_7archive13text_oarchiveENS0_3nvpI12NullSrnModelEEE6invokeERS3_RKS6_j fun:_ZN5boost13serialization10split_freeINS_7archive13text_oarchiveENS0_3nvpI12NullSrnModelEEEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RNS0_3nvpIT0_EEj fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveENS0_3nvpI12NullSrnModelEEEEvRT_RT0_j fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE9save_only6invokeINS_13serialization3nvpI12NullSrnModelEEEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeINS_13serialization3nvpI12NullSrnModelEEEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEKNS_13serialization3nvpI12NullSrnModelEEEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIKNS_13serialization3nvpI12NullSrnModelEEEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIKNS_13serialization3nvpI12NullSrnModelEEEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsINS_13serialization3nvpI12NullSrnModelEEEERS3_RKT_ fun:_ZNK5boost7archive6detail19pointer_oserializerINS0_13text_oarchiveE12NullSrnModelE15save_object_ptrERNS1_14basic_oarchiveEPKv obj:/usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0 } ==2685152== ==2685152== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2685152== Open file descriptor 12: ==2685152== at 0x100C022D: pipe (pipe.c:29) ==2685152== by 0x1A1F207D: ??? ==2685152== by 0x147934CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2685152== by 0xF9CA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2685152== by 0xF963D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2685152== by 0xE65AD38: PetscInitialize (pinit.c:924) ==2685152== by 0xE4CC58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2685152== by 0xE4CC5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2685152== by 0x19DA6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2685152== by 0x1941B7: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2685152== by 0x19785C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2685152== by 0x1976FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2685152== by 0x197D93: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2685152== by 0x18FFA0: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==2685152== ==2685152== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2685152== at 0x100C4BCC: __open_nocancel (open64_nocancel.c:39) ==2685152== by 0x10048C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2685152== by 0xE504822: ??? ==2685152== by 0xE50496F: ??? ==2685152== by 0x148386DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2685152== by 0x14838938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2685152== by 0x147EE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2685152== by 0x147932DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2685152== by 0xF9CA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2685152== by 0xF963D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2685152== by 0xE65AD38: PetscInitialize (pinit.c:924) ==2685152== by 0xE4CC58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2685152== by 0xE4CC5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2685152== by 0x19DA6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2685152== by 0x1941B7: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2685152== by 0x19785C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2685152== by 0x1976FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2685152== by 0x197D93: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2685152== by 0x18FFA0: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==2685152== ==2685152== Open file descriptor 117: ==2685152== ==2685152== ==2685152== Open file descriptor 110: ==2685152== ==2685152== ==2685152== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt ==2685152== ==2685152== ==2685152== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2685152== ==2685152== ==2685152== ==2685152== HEAP SUMMARY: ==2685152== in use at exit: 700,855 bytes in 9,379 blocks ==2685152== total heap usage: 863,611 allocs, 854,232 frees, 1,475,854,551 bytes allocated ==2685152== ==2685152== 552 bytes in 1 blocks are definitely lost in loss record 41 of 67 ==2685152== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2685152== by 0x1AAC0C13: ??? ==2685152== by 0x1AAC122C: ??? ==2685152== by 0x1AA344B7: ??? ==2685152== by 0xF93015A: ompi_proc_complete_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2685152== by 0xF9CAA97: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2685152== by 0xF963D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2685152== by 0xE65AD38: PetscInitialize (pinit.c:924) ==2685152== by 0xE4CC58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2685152== by 0xE4CC5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2685152== by 0x19DA6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2685152== by 0x1941B7: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2685152== by 0x19785C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2685152== by 0x1976FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2685152== by 0x197D93: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2685152== by 0x18FFA0: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==2685152== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* fun:ompi_proc_complete_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2685152== 23,323 (136 direct, 23,187 indirect) bytes in 1 blocks are definitely lost in loss record 64 of 67 ==2685152== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2685152== by 0x1C03374E: ??? ==2685152== by 0x1C033E0B: ??? ==2685152== by 0x1C036F56: ??? ==2685152== by 0x1C02C65D: ??? ==2685152== by 0x1C02CFA3: ??? ==2685152== by 0x148A4F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==2685152== by 0x14880AE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==2685152== by 0x14831CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2685152== by 0x1475EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2685152== by 0x1A1F2F03: ??? ==2685152== by 0x147934CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2685152== by 0xF9CA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2685152== by 0xF963D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2685152== by 0xE65AD38: PetscInitialize (pinit.c:924) ==2685152== by 0xE4CC58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2685152== by 0xE4CC5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2685152== by 0x19DA6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2685152== by 0x1941B7: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2685152== by 0x19785C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2685152== by 0x1976FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2685152== by 0x197D93: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2685152== by 0x18FFA0: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==2685152== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* obj:* obj:* obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2 fun:hwloc_topology_load fun:opal_hwloc_base_get_topology fun:orte_ess_base_proc_binding obj:* fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2685152== LEAK SUMMARY: ==2685152== definitely lost: 688 bytes in 2 blocks ==2685152== indirectly lost: 1,760 bytes in 16 blocks ==2685152== possibly lost: 0 bytes in 0 blocks ==2685152== still reachable: 1,627 bytes in 8 blocks ==2685152== suppressed: 696,780 bytes in 9,353 blocks ==2685152== Reachable blocks (those to which a pointer was found) are not shown. ==2685152== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2685152== ==2685152== Use --track-origins=yes to see where uninitialised values come from ==2685152== For lists of detected and suppressed errors, rerun with: -s ==2685152== ERROR SUMMARY: 79 errors from 7 contexts (suppressed: 32 from 32)