==2880614== Memcheck, a memory error detector ==2880614== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2880614== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2880614== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestArchiveCell -malloc_debug -malloc_dump -memory_info ==2880614== Parent PID: 2879489 ==2880614== ==2880614== WARNING: pwritev(vector[...]) is an obsolete suppression line not supported in valgrind 3.15 or later. ==2880614== You should replace [...] by a specific index such as [0] or [1] or [2] or similar ==2880614== ==2880614== Syscall param socketcall.getsockopt(optlen) points to uninitialised byte(s) ==2880614== at 0xE25E79E: getsockopt_syscall (getsockopt.c:29) ==2880614== by 0xE25E79E: getsockopt (getsockopt.c:94) ==2880614== by 0x192C8157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2880614== by 0x192CFA1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2880614== by 0x192D6DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2880614== by 0x191D63C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2880614== by 0x1914FE4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==2880614== by 0x1890EE6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==2880614== by 0x12E5F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2880614== by 0xDE9D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2880614== by 0xDE36D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2880614== by 0xCB2DD38: PetscInitialize (pinit.c:924) ==2880614== by 0xC99D58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2880614== by 0xC99D5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2880614== by 0x1B14CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2880614== by 0x1AA2A1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2880614== by 0x1AD318: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2880614== by 0x1AD214: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2880614== by 0x1AD827: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2880614== by 0x1A8A60: main (TestArchiveCell.cpp:18) ==2880614== Address 0x1ffeffdfac is on thread 1's stack ==2880614== in frame #2, created by pmix_ptl_base_make_connection (???:) ==2880614== { Memcheck:Param socketcall.getsockopt(optlen) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2880614== Syscall param socketcall.getsockopt(optlen_out) points to uninitialised byte(s) ==2880614== at 0xE25E79E: getsockopt_syscall (getsockopt.c:29) ==2880614== by 0xE25E79E: getsockopt (getsockopt.c:94) ==2880614== by 0x192C8157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2880614== by 0x192CFA1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2880614== by 0x192D6DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2880614== by 0x191D63C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2880614== by 0x1914FE4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==2880614== by 0x1890EE6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==2880614== by 0x12E5F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2880614== by 0xDE9D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2880614== by 0xDE36D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2880614== by 0xCB2DD38: PetscInitialize (pinit.c:924) ==2880614== by 0xC99D58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2880614== by 0xC99D5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2880614== by 0x1B14CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2880614== by 0x1AA2A1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2880614== by 0x1AD318: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2880614== by 0x1AD214: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2880614== by 0x1AD827: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2880614== by 0x1A8A60: main (TestArchiveCell.cpp:18) ==2880614== Address 0x1ffeffdfac is on thread 1's stack ==2880614== in frame #2, created by pmix_ptl_base_make_connection (???:) ==2880614== { Memcheck:Param socketcall.getsockopt(optlen_out) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2880614== Syscall param setsockopt(optlen) contains uninitialised byte(s) ==2880614== at 0xE25EC7E: setsockopt_syscall (setsockopt.c:29) ==2880614== by 0xE25EC7E: setsockopt (setsockopt.c:95) ==2880614== by 0x192CFBA9: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2880614== by 0x192D6DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2880614== by 0x191D63C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2880614== by 0x1914FE4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==2880614== by 0x1890EE6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==2880614== by 0x12E5F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2880614== by 0xDE9D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2880614== by 0xDE36D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2880614== by 0xCB2DD38: PetscInitialize (pinit.c:924) ==2880614== by 0xC99D58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2880614== by 0xC99D5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2880614== by 0x1B14CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2880614== by 0x1AA2A1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2880614== by 0x1AD318: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2880614== by 0x1AD214: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2880614== by 0x1AD827: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2880614== by 0x1A8A60: main (TestArchiveCell.cpp:18) ==2880614== { Memcheck:Param setsockopt(optlen) fun:setsockopt_syscall fun:setsockopt fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2880614== Use of uninitialised value of size 8 ==2880614== at 0xE03B81B: ??? (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==2880614== by 0xE03BF99: std::ostreambuf_iterator > std::num_put > >::_M_insert_int(std::ostreambuf_iterator >, std::ios_base&, char, unsigned long) const (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==2880614== by 0xE04A399: std::ostream& std::ostream::_M_insert(unsigned long) (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==2880614== by 0x1D0236: void boost::archive::basic_text_oprimitive::save_impl(unsigned int const&, mpl_::bool_&) (basic_text_oprimitive.hpp:130) ==2880614== by 0x1CFA4D: void boost::archive::basic_text_oprimitive::save(unsigned int const&) (basic_text_oprimitive.hpp:180) ==2880614== by 0x1CF388: void boost::archive::text_oarchive_impl::save(unsigned int const&) (text_oarchive.hpp:65) ==2880614== by 0x1CEF43: void boost::archive::save_access::save_primitive(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:93) ==2880614== by 0x1CEB7B: void boost::archive::detail::save_non_pointer_type::save_primitive::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:237) ==2880614== by 0x1CE84E: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:315) ==2880614== by 0x1CE270: void boost::archive::save(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:539) ==2880614== by 0x1CDBFD: void boost::archive::detail::common_oarchive::save_override(unsigned int const&) (common_oarchive.hpp:71) ==2880614== by 0x1CD2B8: void boost::archive::basic_text_oarchive::save_override(unsigned int const&) (basic_text_oarchive.hpp:83) ==2880614== by 0x1CCB99: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (unsigned int const&) (interface_oarchive.hpp:70) ==2880614== by 0x1CC4C9: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(unsigned int const&) (interface_oarchive.hpp:77) ==2880614== by 0x9C595ED: void AbstractSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (AbstractSrnModel.hpp:83) ==2880614== by 0x9C58772: void boost::serialization::access::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (access.hpp:116) ==2880614== by 0x9C5748C: void boost::serialization::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:68) ==2880614== by 0x9C56682: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:118) ==2880614== by 0x9C55FAD: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==2880614== by 0x9C55A3D: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:258) ==2880614== by 0x9C55607: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:315) ==2880614== by 0x9C551D8: void boost::archive::save(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:539) ==2880614== by 0x9C54E77: void boost::archive::detail::common_oarchive::save_override(AbstractSrnModel const&) (common_oarchive.hpp:71) ==2880614== by 0x9C54B06: void boost::archive::basic_text_oarchive::save_override(AbstractSrnModel const&) (basic_text_oarchive.hpp:83) ==2880614== by 0x9C546E1: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (AbstractSrnModel const&) (interface_oarchive.hpp:70) ==2880614== by 0x9C5436B: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(AbstractSrnModel const&) (interface_oarchive.hpp:77) ==2880614== by 0x9C8AFDC: void AbstractOdeSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (AbstractOdeSrnModel.hpp:71) ==2880614== by 0x9C8890C: void boost::serialization::access::serialize(boost::archive::text_oarchive&, AbstractOdeSrnModel&, unsigned int) (access.hpp:116) ==2880614== by 0x9C8593C: void boost::serialization::serialize(boost::archive::text_oarchive&, AbstractOdeSrnModel&, unsigned int) (serialization.hpp:68) ==2880614== by 0x9C83AF8: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, AbstractOdeSrnModel&, unsigned int) (serialization.hpp:118) ==2880614== by 0x9C821B5: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==2880614== by 0x9C80E63: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, AbstractOdeSrnModel const&) (oserializer.hpp:258) ==2880614== by 0x9C7FD0F: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, AbstractOdeSrnModel const&) (oserializer.hpp:315) ==2880614== by 0x9C7EF42: void boost::archive::save(boost::archive::text_oarchive&, AbstractOdeSrnModel const&) (oserializer.hpp:539) ==2880614== by 0x9C7E28D: void boost::archive::detail::common_oarchive::save_override(AbstractOdeSrnModel const&) (common_oarchive.hpp:71) ==2880614== by 0x9C7D220: void boost::archive::basic_text_oarchive::save_override(AbstractOdeSrnModel const&) (basic_text_oarchive.hpp:83) ==2880614== by 0x9C7C2F7: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (AbstractOdeSrnModel const&) (interface_oarchive.hpp:70) ==2880614== by 0x9C7B701: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(AbstractOdeSrnModel const&) (interface_oarchive.hpp:77) ==2880614== by 0x9D46E5A: void Goldbeter1991SrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (Goldbeter1991SrnModel.hpp:66) ==2880614== by 0x9D44682: void boost::serialization::access::serialize(boost::archive::text_oarchive&, Goldbeter1991SrnModel&, unsigned int) (access.hpp:116) ==2880614== by 0x9D41696: void boost::serialization::serialize(boost::archive::text_oarchive&, Goldbeter1991SrnModel&, unsigned int) (serialization.hpp:68) ==2880614== by 0x9D3DD36: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, Goldbeter1991SrnModel&, unsigned int) (serialization.hpp:118) ==2880614== by 0x9D3BFEB: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==2880614== by 0x9D4FD32: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, Goldbeter1991SrnModel const&) (oserializer.hpp:258) ==2880614== by 0x9D4E690: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, Goldbeter1991SrnModel const&) (oserializer.hpp:315) ==2880614== by 0x9D4D4A0: void boost::archive::save(boost::archive::text_oarchive&, Goldbeter1991SrnModel const&) (oserializer.hpp:539) ==2880614== by 0x9D4C43B: void boost::archive::detail::common_oarchive::save_override(Goldbeter1991SrnModel const&) (common_oarchive.hpp:71) ==2880614== by 0x9D4B72E: void boost::archive::basic_text_oarchive::save_override(Goldbeter1991SrnModel const&) (basic_text_oarchive.hpp:83) ==2880614== by 0x9D4AB4F: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (Goldbeter1991SrnModel const&) (interface_oarchive.hpp:70) ==2880614== by 0x9D49B82: void boost::serialization::save(boost::archive::text_oarchive&, boost::serialization::nvp const&, unsigned int) (nvp.hpp:48) ==2880614== { Memcheck:Value8 obj:/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30 fun:_ZNKSt7num_putIcSt19ostreambuf_iteratorIcSt11char_traitsIcEEE13_M_insert_intImEES3_S3_RSt8ios_basecT_ fun:_ZNSo9_M_insertImEERSoT_ fun:_ZN5boost7archive21basic_text_oprimitiveISoE9save_implIjEEvRKT_RN4mpl_5bool_ILb0EEE fun:_ZN5boost7archive21basic_text_oprimitiveISoE4saveIjEEvRKT_ fun:_ZN5boost7archive18text_oarchive_implINS0_13text_oarchiveEE4saveIjEEvRKT_ fun:_ZN5boost7archive11save_access14save_primitiveINS0_13text_oarchiveEjEEvRT_RKT0_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE14save_primitive6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEKjEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsIjEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanIjEERS3_RKT_ fun:_ZN16AbstractSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE16AbstractSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK16AbstractSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI16AbstractSrnModelEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanI16AbstractSrnModelEERS3_RKT_ fun:_ZN19AbstractOdeSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE19AbstractOdeSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE19AbstractOdeSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE19AbstractOdeSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE19AbstractOdeSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI19AbstractOdeSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI19AbstractOdeSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK19AbstractOdeSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK19AbstractOdeSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK19AbstractOdeSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI19AbstractOdeSrnModelEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanI19AbstractOdeSrnModelEERS3_RKT_ fun:_ZN21Goldbeter1991SrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE21Goldbeter1991SrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE21Goldbeter1991SrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE21Goldbeter1991SrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE21Goldbeter1991SrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI21Goldbeter1991SrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI21Goldbeter1991SrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK21Goldbeter1991SrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK21Goldbeter1991SrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK21Goldbeter1991SrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI21Goldbeter1991SrnModelEERS3_RKT_ fun:_ZN5boost13serialization4saveINS_7archive13text_oarchiveE21Goldbeter1991SrnModelEEvRT_RKNS0_3nvpIT0_EEj } ==2880614== Conditional jump or move depends on uninitialised value(s) ==2880614== at 0xE03B82D: ??? (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==2880614== by 0xE03BF99: std::ostreambuf_iterator > std::num_put > >::_M_insert_int(std::ostreambuf_iterator >, std::ios_base&, char, unsigned long) const (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==2880614== by 0xE04A399: std::ostream& std::ostream::_M_insert(unsigned long) (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==2880614== by 0x1D0236: void boost::archive::basic_text_oprimitive::save_impl(unsigned int const&, mpl_::bool_&) (basic_text_oprimitive.hpp:130) ==2880614== by 0x1CFA4D: void boost::archive::basic_text_oprimitive::save(unsigned int const&) (basic_text_oprimitive.hpp:180) ==2880614== by 0x1CF388: void boost::archive::text_oarchive_impl::save(unsigned int const&) (text_oarchive.hpp:65) ==2880614== by 0x1CEF43: void boost::archive::save_access::save_primitive(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:93) ==2880614== by 0x1CEB7B: void boost::archive::detail::save_non_pointer_type::save_primitive::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:237) ==2880614== by 0x1CE84E: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:315) ==2880614== by 0x1CE270: void boost::archive::save(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:539) ==2880614== by 0x1CDBFD: void boost::archive::detail::common_oarchive::save_override(unsigned int const&) (common_oarchive.hpp:71) ==2880614== by 0x1CD2B8: void boost::archive::basic_text_oarchive::save_override(unsigned int const&) (basic_text_oarchive.hpp:83) ==2880614== by 0x1CCB99: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (unsigned int const&) (interface_oarchive.hpp:70) ==2880614== by 0x1CC4C9: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(unsigned int const&) (interface_oarchive.hpp:77) ==2880614== by 0x9C595ED: void AbstractSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (AbstractSrnModel.hpp:83) ==2880614== by 0x9C58772: void boost::serialization::access::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (access.hpp:116) ==2880614== by 0x9C5748C: void boost::serialization::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:68) ==2880614== by 0x9C56682: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:118) ==2880614== by 0x9C55FAD: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==2880614== by 0x9C55A3D: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:258) ==2880614== by 0x9C55607: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:315) ==2880614== by 0x9C551D8: void boost::archive::save(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:539) ==2880614== by 0x9C54E77: void boost::archive::detail::common_oarchive::save_override(AbstractSrnModel const&) (common_oarchive.hpp:71) ==2880614== by 0x9C54B06: void boost::archive::basic_text_oarchive::save_override(AbstractSrnModel const&) (basic_text_oarchive.hpp:83) ==2880614== by 0x9C546E1: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (AbstractSrnModel const&) (interface_oarchive.hpp:70) ==2880614== by 0x9C5436B: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(AbstractSrnModel const&) (interface_oarchive.hpp:77) ==2880614== by 0x9C8AFDC: void AbstractOdeSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (AbstractOdeSrnModel.hpp:71) ==2880614== by 0x9C8890C: void boost::serialization::access::serialize(boost::archive::text_oarchive&, AbstractOdeSrnModel&, unsigned int) (access.hpp:116) ==2880614== by 0x9C8593C: void boost::serialization::serialize(boost::archive::text_oarchive&, AbstractOdeSrnModel&, unsigned int) (serialization.hpp:68) ==2880614== by 0x9C83AF8: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, AbstractOdeSrnModel&, unsigned int) (serialization.hpp:118) ==2880614== by 0x9C821B5: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==2880614== by 0x9C80E63: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, AbstractOdeSrnModel const&) (oserializer.hpp:258) ==2880614== by 0x9C7FD0F: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, AbstractOdeSrnModel const&) (oserializer.hpp:315) ==2880614== by 0x9C7EF42: void boost::archive::save(boost::archive::text_oarchive&, AbstractOdeSrnModel const&) (oserializer.hpp:539) ==2880614== by 0x9C7E28D: void boost::archive::detail::common_oarchive::save_override(AbstractOdeSrnModel const&) (common_oarchive.hpp:71) ==2880614== by 0x9C7D220: void boost::archive::basic_text_oarchive::save_override(AbstractOdeSrnModel const&) (basic_text_oarchive.hpp:83) ==2880614== by 0x9C7C2F7: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (AbstractOdeSrnModel const&) (interface_oarchive.hpp:70) ==2880614== by 0x9C7B701: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(AbstractOdeSrnModel const&) (interface_oarchive.hpp:77) ==2880614== by 0x9D46E5A: void Goldbeter1991SrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (Goldbeter1991SrnModel.hpp:66) ==2880614== by 0x9D44682: void boost::serialization::access::serialize(boost::archive::text_oarchive&, Goldbeter1991SrnModel&, unsigned int) (access.hpp:116) ==2880614== by 0x9D41696: void boost::serialization::serialize(boost::archive::text_oarchive&, Goldbeter1991SrnModel&, unsigned int) (serialization.hpp:68) ==2880614== by 0x9D3DD36: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, Goldbeter1991SrnModel&, unsigned int) (serialization.hpp:118) ==2880614== by 0x9D3BFEB: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==2880614== by 0x9D4FD32: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, Goldbeter1991SrnModel const&) (oserializer.hpp:258) ==2880614== by 0x9D4E690: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, Goldbeter1991SrnModel const&) (oserializer.hpp:315) ==2880614== by 0x9D4D4A0: void boost::archive::save(boost::archive::text_oarchive&, Goldbeter1991SrnModel const&) (oserializer.hpp:539) ==2880614== by 0x9D4C43B: void boost::archive::detail::common_oarchive::save_override(Goldbeter1991SrnModel const&) (common_oarchive.hpp:71) ==2880614== by 0x9D4B72E: void boost::archive::basic_text_oarchive::save_override(Goldbeter1991SrnModel const&) (basic_text_oarchive.hpp:83) ==2880614== by 0x9D4AB4F: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (Goldbeter1991SrnModel const&) (interface_oarchive.hpp:70) ==2880614== by 0x9D49B82: void boost::serialization::save(boost::archive::text_oarchive&, boost::serialization::nvp const&, unsigned int) (nvp.hpp:48) ==2880614== { Memcheck:Cond obj:/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30 fun:_ZNKSt7num_putIcSt19ostreambuf_iteratorIcSt11char_traitsIcEEE13_M_insert_intImEES3_S3_RSt8ios_basecT_ fun:_ZNSo9_M_insertImEERSoT_ fun:_ZN5boost7archive21basic_text_oprimitiveISoE9save_implIjEEvRKT_RN4mpl_5bool_ILb0EEE fun:_ZN5boost7archive21basic_text_oprimitiveISoE4saveIjEEvRKT_ fun:_ZN5boost7archive18text_oarchive_implINS0_13text_oarchiveEE4saveIjEEvRKT_ fun:_ZN5boost7archive11save_access14save_primitiveINS0_13text_oarchiveEjEEvRT_RKT0_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE14save_primitive6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEKjEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsIjEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanIjEERS3_RKT_ fun:_ZN16AbstractSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE16AbstractSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK16AbstractSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI16AbstractSrnModelEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanI16AbstractSrnModelEERS3_RKT_ fun:_ZN19AbstractOdeSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE19AbstractOdeSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE19AbstractOdeSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE19AbstractOdeSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE19AbstractOdeSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI19AbstractOdeSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI19AbstractOdeSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK19AbstractOdeSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK19AbstractOdeSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK19AbstractOdeSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI19AbstractOdeSrnModelEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanI19AbstractOdeSrnModelEERS3_RKT_ fun:_ZN21Goldbeter1991SrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE21Goldbeter1991SrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE21Goldbeter1991SrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE21Goldbeter1991SrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE21Goldbeter1991SrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI21Goldbeter1991SrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI21Goldbeter1991SrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK21Goldbeter1991SrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK21Goldbeter1991SrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK21Goldbeter1991SrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI21Goldbeter1991SrnModelEERS3_RKT_ fun:_ZN5boost13serialization4saveINS_7archive13text_oarchiveE21Goldbeter1991SrnModelEEvRT_RKNS0_3nvpIT0_EEj } ==2880614== ==2880614== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2880614== Open file descriptor 12: ==2880614== at 0xE24C22D: pipe (pipe.c:29) ==2880614== by 0x1890F07D: ??? ==2880614== by 0x12E5F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2880614== by 0xDE9D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2880614== by 0xDE36D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2880614== by 0xCB2DD38: PetscInitialize (pinit.c:924) ==2880614== by 0xC99D58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2880614== by 0xC99D5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2880614== by 0x1B14CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2880614== by 0x1AA2A1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2880614== by 0x1AD318: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2880614== by 0x1AD214: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2880614== by 0x1AD827: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2880614== by 0x1A8A60: main (TestArchiveCell.cpp:18) ==2880614== ==2880614== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2880614== at 0xE250BCC: __open_nocancel (open64_nocancel.c:39) ==2880614== by 0xE1D4C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2880614== by 0xC9D5822: ??? ==2880614== by 0xC9D596F: ??? ==2880614== by 0x12F046DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2880614== by 0x12F04938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2880614== by 0x12EBA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2880614== by 0x12E5F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2880614== by 0xDE9D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2880614== by 0xDE36D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2880614== by 0xCB2DD38: PetscInitialize (pinit.c:924) ==2880614== by 0xC99D58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2880614== by 0xC99D5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2880614== by 0x1B14CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2880614== by 0x1AA2A1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2880614== by 0x1AD318: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2880614== by 0x1AD214: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2880614== by 0x1AD827: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2880614== by 0x1A8A60: main (TestArchiveCell.cpp:18) ==2880614== ==2880614== Open file descriptor 117: ==2880614== ==2880614== ==2880614== Open file descriptor 110: ==2880614== ==2880614== ==2880614== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchiveCell_valgrind.txt ==2880614== ==2880614== ==2880614== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2880614== ==2880614== ==2880614== ==2880614== HEAP SUMMARY: ==2880614== in use at exit: 700,839 bytes in 9,379 blocks ==2880614== total heap usage: 55,542 allocs, 46,163 frees, 1,353,962,977 bytes allocated ==2880614== ==2880614== 552 bytes in 1 blocks are definitely lost in loss record 41 of 67 ==2880614== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2880614== by 0x191DDC13: ??? ==2880614== by 0x191DE22C: ??? ==2880614== by 0x191514B7: ??? ==2880614== by 0xDE0315A: ompi_proc_complete_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2880614== by 0xDE9DA97: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2880614== by 0xDE36D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2880614== by 0xCB2DD38: PetscInitialize (pinit.c:924) ==2880614== by 0xC99D58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2880614== by 0xC99D5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2880614== by 0x1B14CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2880614== by 0x1AA2A1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2880614== by 0x1AD318: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2880614== by 0x1AD214: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2880614== by 0x1AD827: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2880614== by 0x1A8A60: main (TestArchiveCell.cpp:18) ==2880614== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* fun:ompi_proc_complete_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2880614== 84,376 (136 direct, 84,240 indirect) bytes in 1 blocks are definitely lost in loss record 64 of 67 ==2880614== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2880614== by 0x1A75074E: ??? ==2880614== by 0x1A750E0B: ??? ==2880614== by 0x1A753F56: ??? ==2880614== by 0x1A74965D: ??? ==2880614== by 0x1A749FA3: ??? ==2880614== by 0x12F70F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==2880614== by 0x12F4CAE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==2880614== by 0x12EFDCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2880614== by 0x12E2AEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2880614== by 0x1890FF03: ??? ==2880614== by 0x12E5F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2880614== by 0xDE9D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2880614== by 0xDE36D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2880614== by 0xCB2DD38: PetscInitialize (pinit.c:924) ==2880614== by 0xC99D58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2880614== by 0xC99D5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2880614== by 0x1B14CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2880614== by 0x1AA2A1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2880614== by 0x1AD318: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2880614== by 0x1AD214: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2880614== by 0x1AD827: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2880614== by 0x1A8A60: main (TestArchiveCell.cpp:18) ==2880614== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* obj:* obj:* obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2 fun:hwloc_topology_load fun:opal_hwloc_base_get_topology fun:orte_ess_base_proc_binding obj:* fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2880614== LEAK SUMMARY: ==2880614== definitely lost: 688 bytes in 2 blocks ==2880614== indirectly lost: 1,760 bytes in 16 blocks ==2880614== possibly lost: 0 bytes in 0 blocks ==2880614== still reachable: 1,627 bytes in 8 blocks ==2880614== suppressed: 696,764 bytes in 9,353 blocks ==2880614== Reachable blocks (those to which a pointer was found) are not shown. ==2880614== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2880614== ==2880614== Use --track-origins=yes to see where uninitialised values come from ==2880614== For lists of detected and suppressed errors, rerun with: -s ==2880614== ERROR SUMMARY: 23 errors from 7 contexts (suppressed: 32 from 32)