==2922971== Memcheck, a memory error detector ==2922971== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2922971== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2922971== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableVertexMeshRosetteMethods -malloc_debug -malloc_dump -memory_info ==2922971== Parent PID: 2922346 ==2922971== ==2922971== WARNING: pwritev(vector[...]) is an obsolete suppression line not supported in valgrind 3.15 or later. ==2922971== You should replace [...] by a specific index such as [0] or [1] or [2] or similar ==2922971== ==2922971== Syscall param socketcall.getsockopt(optlen) points to uninitialised byte(s) ==2922971== at 0x7F5979E: getsockopt_syscall (getsockopt.c:29) ==2922971== by 0x7F5979E: getsockopt (getsockopt.c:94) ==2922971== by 0x107C4157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2922971== by 0x107CBA1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2922971== by 0x107D2DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2922971== by 0x106D23C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2922971== by 0x1064BE4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==2922971== by 0xFE0AE6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==2922971== by 0xB74E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2922971== by 0x776A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2922971== by 0x7703D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2922971== by 0x63FAD38: PetscInitialize (pinit.c:924) ==2922971== by 0x626A58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2922971== by 0x626A5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2922971== by 0x12D55B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2922971== by 0x126E7F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2922971== by 0x129CA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2922971== by 0x129B42: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2922971== by 0x12A1D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2922971== by 0x1251B0: main (TestMutableVertexMeshRosetteMethods.cpp:19) ==2922971== Address 0x1ffeffdf7c is on thread 1's stack ==2922971== in frame #2, created by pmix_ptl_base_make_connection (???:) ==2922971== { Memcheck:Param socketcall.getsockopt(optlen) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2922971== Syscall param socketcall.getsockopt(optlen_out) points to uninitialised byte(s) ==2922971== at 0x7F5979E: getsockopt_syscall (getsockopt.c:29) ==2922971== by 0x7F5979E: getsockopt (getsockopt.c:94) ==2922971== by 0x107C4157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2922971== by 0x107CBA1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2922971== by 0x107D2DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2922971== by 0x106D23C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2922971== by 0x1064BE4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==2922971== by 0xFE0AE6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==2922971== by 0xB74E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2922971== by 0x776A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2922971== by 0x7703D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2922971== by 0x63FAD38: PetscInitialize (pinit.c:924) ==2922971== by 0x626A58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2922971== by 0x626A5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2922971== by 0x12D55B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2922971== by 0x126E7F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2922971== by 0x129CA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2922971== by 0x129B42: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2922971== by 0x12A1D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2922971== by 0x1251B0: main (TestMutableVertexMeshRosetteMethods.cpp:19) ==2922971== Address 0x1ffeffdf7c is on thread 1's stack ==2922971== in frame #2, created by pmix_ptl_base_make_connection (???:) ==2922971== { Memcheck:Param socketcall.getsockopt(optlen_out) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2922971== Syscall param setsockopt(optlen) contains uninitialised byte(s) ==2922971== at 0x7F59C7E: setsockopt_syscall (setsockopt.c:29) ==2922971== by 0x7F59C7E: setsockopt (setsockopt.c:95) ==2922971== by 0x107CBBA9: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2922971== by 0x107D2DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2922971== by 0x106D23C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==2922971== by 0x1064BE4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==2922971== by 0xFE0AE6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==2922971== by 0xB74E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2922971== by 0x776A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2922971== by 0x7703D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2922971== by 0x63FAD38: PetscInitialize (pinit.c:924) ==2922971== by 0x626A58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2922971== by 0x626A5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2922971== by 0x12D55B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2922971== by 0x126E7F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2922971== by 0x129CA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2922971== by 0x129B42: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2922971== by 0x12A1D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2922971== by 0x1251B0: main (TestMutableVertexMeshRosetteMethods.cpp:19) ==2922971== { Memcheck:Param setsockopt(optlen) fun:setsockopt_syscall fun:setsockopt fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2922971== ==2922971== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2922971== Open file descriptor 12: ==2922971== at 0x7F4722D: pipe (pipe.c:29) ==2922971== by 0xFE0B07D: ??? ==2922971== by 0xB74E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2922971== by 0x776A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2922971== by 0x7703D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2922971== by 0x63FAD38: PetscInitialize (pinit.c:924) ==2922971== by 0x626A58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2922971== by 0x626A5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2922971== by 0x12D55B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2922971== by 0x126E7F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2922971== by 0x129CA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2922971== by 0x129B42: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2922971== by 0x12A1D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2922971== by 0x1251B0: main (TestMutableVertexMeshRosetteMethods.cpp:19) ==2922971== ==2922971== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2922971== at 0x7F4BBCC: __open_nocancel (open64_nocancel.c:39) ==2922971== by 0x7ECFC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2922971== by 0x62A2822: ??? ==2922971== by 0x62A296F: ??? ==2922971== by 0xB7F36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2922971== by 0xB7F3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2922971== by 0xB7A9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2922971== by 0xB74E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2922971== by 0x776A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2922971== by 0x7703D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2922971== by 0x63FAD38: PetscInitialize (pinit.c:924) ==2922971== by 0x626A58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2922971== by 0x626A5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2922971== by 0x12D55B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2922971== by 0x126E7F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2922971== by 0x129CA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2922971== by 0x129B42: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2922971== by 0x12A1D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2922971== by 0x1251B0: main (TestMutableVertexMeshRosetteMethods.cpp:19) ==2922971== ==2922971== Open file descriptor 117: ==2922971== ==2922971== ==2922971== Open file descriptor 110: ==2922971== ==2922971== ==2922971== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMeshRosetteMethods_valgrind.txt ==2922971== ==2922971== ==2922971== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2922971== ==2922971== ==2922971== ==2922971== HEAP SUMMARY: ==2922971== in use at exit: 704,183 bytes in 9,402 blocks ==2922971== total heap usage: 55,372 allocs, 45,970 frees, 1,353,845,188 bytes allocated ==2922971== ==2922971== 172 (40 direct, 132 indirect) bytes in 1 blocks are definitely lost in loss record 51 of 84 ==2922971== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2922971== by 0x5BF04FC: VertexMeshOperationRecorder<2u, 2u>::RecordNewEdgeOperation(VertexElement<2u, 2u>*, unsigned int) (VertexMeshOperationRecorder.cpp:435) ==2922971== by 0x5B0839B: MutableVertexMesh<2u, 2u>::PerformProtorosetteResolution(Node<2u>*) (MutableVertexMesh.cpp:3712) ==2922971== by 0x136D27: TestMutableVertexMeshRosetteMethods::TestPerformProtorosetteResolution() (TestMutableVertexMeshRosetteMethods.hpp:488) ==2922971== by 0x13E290: TestDescription_TestMutableVertexMeshRosetteMethods_TestPerformProtorosetteResolution::runTest() (TestMutableVertexMeshRosetteMethods.cpp:55) ==2922971== by 0x12647A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==2922971== by 0x129F50: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==2922971== by 0x129E35: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==2922971== by 0x129CDB: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==2922971== by 0x129B42: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2922971== by 0x12A1D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2922971== by 0x1251B0: main (TestMutableVertexMeshRosetteMethods.cpp:19) ==2922971== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN27VertexMeshOperationRecorderILj2ELj2EE22RecordNewEdgeOperationEP13VertexElementILj2ELj2EEj fun:_ZN17MutableVertexMeshILj2ELj2EE29PerformProtorosetteResolutionEP4NodeILj2EE fun:_ZN35TestMutableVertexMeshRosetteMethods33TestPerformProtorosetteResolutionEv fun:_ZN85TestDescription_TestMutableVertexMeshRosetteMethods_TestPerformProtorosetteResolution7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2922971== 172 (40 direct, 132 indirect) bytes in 1 blocks are definitely lost in loss record 52 of 84 ==2922971== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2922971== by 0x5BF04FC: VertexMeshOperationRecorder<2u, 2u>::RecordNewEdgeOperation(VertexElement<2u, 2u>*, unsigned int) (VertexMeshOperationRecorder.cpp:435) ==2922971== by 0x5B08413: MutableVertexMesh<2u, 2u>::PerformProtorosetteResolution(Node<2u>*) (MutableVertexMesh.cpp:3716) ==2922971== by 0x136D27: TestMutableVertexMeshRosetteMethods::TestPerformProtorosetteResolution() (TestMutableVertexMeshRosetteMethods.hpp:488) ==2922971== by 0x13E290: TestDescription_TestMutableVertexMeshRosetteMethods_TestPerformProtorosetteResolution::runTest() (TestMutableVertexMeshRosetteMethods.cpp:55) ==2922971== by 0x12647A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==2922971== by 0x129F50: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==2922971== by 0x129E35: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==2922971== by 0x129CDB: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==2922971== by 0x129B42: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2922971== by 0x12A1D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2922971== by 0x1251B0: main (TestMutableVertexMeshRosetteMethods.cpp:19) ==2922971== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN27VertexMeshOperationRecorderILj2ELj2EE22RecordNewEdgeOperationEP13VertexElementILj2ELj2EEj fun:_ZN17MutableVertexMeshILj2ELj2EE29PerformProtorosetteResolutionEP4NodeILj2EE fun:_ZN35TestMutableVertexMeshRosetteMethods33TestPerformProtorosetteResolutionEv fun:_ZN85TestDescription_TestMutableVertexMeshRosetteMethods_TestPerformProtorosetteResolution7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2922971== 172 (40 direct, 132 indirect) bytes in 1 blocks are definitely lost in loss record 53 of 84 ==2922971== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2922971== by 0x5BF04FC: VertexMeshOperationRecorder<2u, 2u>::RecordNewEdgeOperation(VertexElement<2u, 2u>*, unsigned int) (VertexMeshOperationRecorder.cpp:435) ==2922971== by 0x5B08FA8: MutableVertexMesh<2u, 2u>::PerformRosetteRankDecrease(Node<2u>*) (MutableVertexMesh.cpp:3892) ==2922971== by 0x13AC85: TestMutableVertexMeshRosetteMethods::TestPerformRosetteRankDecrease() (TestMutableVertexMeshRosetteMethods.hpp:568) ==2922971== by 0x13E2FA: TestDescription_TestMutableVertexMeshRosetteMethods_TestPerformRosetteRankDecrease::runTest() (TestMutableVertexMeshRosetteMethods.cpp:61) ==2922971== by 0x12647A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==2922971== by 0x129F50: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==2922971== by 0x129E35: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==2922971== by 0x129CDB: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==2922971== by 0x129B42: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2922971== by 0x12A1D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2922971== by 0x1251B0: main (TestMutableVertexMeshRosetteMethods.cpp:19) ==2922971== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN27VertexMeshOperationRecorderILj2ELj2EE22RecordNewEdgeOperationEP13VertexElementILj2ELj2EEj fun:_ZN17MutableVertexMeshILj2ELj2EE26PerformRosetteRankDecreaseEP4NodeILj2EE fun:_ZN35TestMutableVertexMeshRosetteMethods30TestPerformRosetteRankDecreaseEv fun:_ZN82TestDescription_TestMutableVertexMeshRosetteMethods_TestPerformRosetteRankDecrease7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2922971== 172 (40 direct, 132 indirect) bytes in 1 blocks are definitely lost in loss record 54 of 84 ==2922971== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2922971== by 0x5BF04FC: VertexMeshOperationRecorder<2u, 2u>::RecordNewEdgeOperation(VertexElement<2u, 2u>*, unsigned int) (VertexMeshOperationRecorder.cpp:435) ==2922971== by 0x5B0901D: MutableVertexMesh<2u, 2u>::PerformRosetteRankDecrease(Node<2u>*) (MutableVertexMesh.cpp:3897) ==2922971== by 0x13AC85: TestMutableVertexMeshRosetteMethods::TestPerformRosetteRankDecrease() (TestMutableVertexMeshRosetteMethods.hpp:568) ==2922971== by 0x13E2FA: TestDescription_TestMutableVertexMeshRosetteMethods_TestPerformRosetteRankDecrease::runTest() (TestMutableVertexMeshRosetteMethods.cpp:61) ==2922971== by 0x12647A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==2922971== by 0x129F50: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==2922971== by 0x129E35: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==2922971== by 0x129CDB: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==2922971== by 0x129B42: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2922971== by 0x12A1D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2922971== by 0x1251B0: main (TestMutableVertexMeshRosetteMethods.cpp:19) ==2922971== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN27VertexMeshOperationRecorderILj2ELj2EE22RecordNewEdgeOperationEP13VertexElementILj2ELj2EEj fun:_ZN17MutableVertexMeshILj2ELj2EE26PerformRosetteRankDecreaseEP4NodeILj2EE fun:_ZN35TestMutableVertexMeshRosetteMethods30TestPerformRosetteRankDecreaseEv fun:_ZN82TestDescription_TestMutableVertexMeshRosetteMethods_TestPerformRosetteRankDecrease7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2922971== 296 (80 direct, 216 indirect) bytes in 2 blocks are definitely lost in loss record 57 of 84 ==2922971== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2922971== by 0x5BEEEC7: VertexMeshOperationRecorder<2u, 2u>::RecordNodeMergeOperation(std::vector >, VertexElement<2u, 2u>*, std::pair, bool) (VertexMeshOperationRecorder.cpp:251) ==2922971== by 0x5B07496: MutableVertexMesh<2u, 2u>::PerformRosetteRankIncrease(Node<2u>*, Node<2u>*) (MutableVertexMesh.cpp:3510) ==2922971== by 0x135CA1: TestMutableVertexMeshRosetteMethods::TestPerformRosetteRankIncrease() (TestMutableVertexMeshRosetteMethods.hpp:455) ==2922971== by 0x13E226: TestDescription_TestMutableVertexMeshRosetteMethods_TestPerformRosetteRankIncrease::runTest() (TestMutableVertexMeshRosetteMethods.cpp:49) ==2922971== by 0x12647A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==2922971== by 0x129F50: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==2922971== by 0x129E35: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==2922971== by 0x129CDB: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==2922971== by 0x129B42: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2922971== by 0x12A1D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2922971== by 0x1251B0: main (TestMutableVertexMeshRosetteMethods.cpp:19) ==2922971== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN27VertexMeshOperationRecorderILj2ELj2EE24RecordNodeMergeOperationESt6vectorIjSaIjEEP13VertexElementILj2ELj2EESt4pairIjjEb fun:_ZN17MutableVertexMeshILj2ELj2EE26PerformRosetteRankIncreaseEP4NodeILj2EES3_ fun:_ZN35TestMutableVertexMeshRosetteMethods30TestPerformRosetteRankIncreaseEv fun:_ZN82TestDescription_TestMutableVertexMeshRosetteMethods_TestPerformRosetteRankIncrease7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2922971== 552 bytes in 1 blocks are definitely lost in loss record 60 of 84 ==2922971== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2922971== by 0x106D9C13: ??? ==2922971== by 0x106DA22C: ??? ==2922971== by 0x1064D4B7: ??? ==2922971== by 0x76D015A: ompi_proc_complete_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2922971== by 0x776AA97: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2922971== by 0x7703D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2922971== by 0x63FAD38: PetscInitialize (pinit.c:924) ==2922971== by 0x626A58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2922971== by 0x626A5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2922971== by 0x12D55B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2922971== by 0x126E7F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2922971== by 0x129CA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2922971== by 0x129B42: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2922971== by 0x12A1D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2922971== by 0x1251B0: main (TestMutableVertexMeshRosetteMethods.cpp:19) ==2922971== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* fun:ompi_proc_complete_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2922971== 685,232 (136 direct, 685,096 indirect) bytes in 1 blocks are definitely lost in loss record 84 of 84 ==2922971== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2922971== by 0x1184C74E: ??? ==2922971== by 0x1184CE0B: ??? ==2922971== by 0x1184FF56: ??? ==2922971== by 0x1184565D: ??? ==2922971== by 0x11845FA3: ??? ==2922971== by 0xB85FF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==2922971== by 0xB83BAE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==2922971== by 0xB7ECCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2922971== by 0xB719EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2922971== by 0xFE0BF03: ??? ==2922971== by 0xB74E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2922971== by 0x776A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2922971== by 0x7703D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2922971== by 0x63FAD38: PetscInitialize (pinit.c:924) ==2922971== by 0x626A58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2922971== by 0x626A5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2922971== by 0x12D55B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2922971== by 0x126E7F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2922971== by 0x129CA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2922971== by 0x129B42: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2922971== by 0x12A1D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2922971== by 0x1251B0: main (TestMutableVertexMeshRosetteMethods.cpp:19) ==2922971== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* obj:* obj:* obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2 fun:hwloc_topology_load fun:opal_hwloc_base_get_topology fun:orte_ess_base_proc_binding obj:* fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2922971== LEAK SUMMARY: ==2922971== definitely lost: 928 bytes in 8 blocks ==2922971== indirectly lost: 2,504 bytes in 34 blocks ==2922971== possibly lost: 0 bytes in 0 blocks ==2922971== still reachable: 4,083 bytes in 7 blocks ==2922971== suppressed: 696,668 bytes in 9,353 blocks ==2922971== Reachable blocks (those to which a pointer was found) are not shown. ==2922971== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2922971== ==2922971== Use --track-origins=yes to see where uninitialised values come from ==2922971== For lists of detected and suppressed errors, rerun with: -s ==2922971== ERROR SUMMARY: 10 errors from 10 contexts (suppressed: 30 from 30)