==3381580== Memcheck, a memory error detector ==3381580== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==3381580== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==3381580== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==3381580== Parent PID: 3376052 ==3381580== ==3381580== WARNING: pwritev(vector[...]) is an obsolete suppression line not supported in valgrind 3.15 or later. ==3381580== You should replace [...] by a specific index such as [0] or [1] or [2] or similar ==3381580== ==3381580== Syscall param socketcall.getsockopt(optlen) points to uninitialised byte(s) ==3381580== at 0xEFB379E: getsockopt_syscall (getsockopt.c:29) ==3381580== by 0xEFB379E: getsockopt (getsockopt.c:94) ==3381580== by 0x192CB157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3381580== by 0x192D2A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3381580== by 0x192D9DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3381580== by 0x191D93C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3381580== by 0x19152E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==3381580== by 0x18911E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==3381580== by 0x140414CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3381580== by 0x10C3D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3381580== by 0x10BD6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3381580== by 0xF8CDD38: PetscInitialize (pinit.c:924) ==3381580== by 0xE2FF58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3381580== by 0xE2FF5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3381580== by 0x1DFCCE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3381580== by 0x1D7FD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3381580== by 0x1DB8B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3381580== by 0x1DB758: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3381580== by 0x1DBDEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3381580== by 0x1D62C0: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==3381580== Address 0x1ffeffdf6c is on thread 1's stack ==3381580== in frame #2, created by pmix_ptl_base_make_connection (???:) ==3381580== { Memcheck:Param socketcall.getsockopt(optlen) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3381580== Syscall param socketcall.getsockopt(optlen_out) points to uninitialised byte(s) ==3381580== at 0xEFB379E: getsockopt_syscall (getsockopt.c:29) ==3381580== by 0xEFB379E: getsockopt (getsockopt.c:94) ==3381580== by 0x192CB157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3381580== by 0x192D2A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3381580== by 0x192D9DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3381580== by 0x191D93C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3381580== by 0x19152E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==3381580== by 0x18911E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==3381580== by 0x140414CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3381580== by 0x10C3D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3381580== by 0x10BD6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3381580== by 0xF8CDD38: PetscInitialize (pinit.c:924) ==3381580== by 0xE2FF58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3381580== by 0xE2FF5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3381580== by 0x1DFCCE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3381580== by 0x1D7FD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3381580== by 0x1DB8B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3381580== by 0x1DB758: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3381580== by 0x1DBDEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3381580== by 0x1D62C0: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==3381580== Address 0x1ffeffdf6c is on thread 1's stack ==3381580== in frame #2, created by pmix_ptl_base_make_connection (???:) ==3381580== { Memcheck:Param socketcall.getsockopt(optlen_out) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3381580== Syscall param setsockopt(optlen) contains uninitialised byte(s) ==3381580== at 0xEFB3C7E: setsockopt_syscall (setsockopt.c:29) ==3381580== by 0xEFB3C7E: setsockopt (setsockopt.c:95) ==3381580== by 0x192D2BA9: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3381580== by 0x192D9DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3381580== by 0x191D93C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3381580== by 0x19152E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==3381580== by 0x18911E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==3381580== by 0x140414CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3381580== by 0x10C3D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3381580== by 0x10BD6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3381580== by 0xF8CDD38: PetscInitialize (pinit.c:924) ==3381580== by 0xE2FF58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3381580== by 0xE2FF5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3381580== by 0x1DFCCE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3381580== by 0x1D7FD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3381580== by 0x1DB8B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3381580== by 0x1DB758: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3381580== by 0x1DBDEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3381580== by 0x1D62C0: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==3381580== { Memcheck:Param setsockopt(optlen) fun:setsockopt_syscall fun:setsockopt fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3381580== Use of uninitialised value of size 8 ==3381580== at 0xE4E681B: ??? (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==3381580== by 0xE4E6F99: std::ostreambuf_iterator > std::num_put > >::_M_insert_int(std::ostreambuf_iterator >, std::ios_base&, char, unsigned long) const (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==3381580== by 0xE4F5399: std::ostream& std::ostream::_M_insert(unsigned long) (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==3381580== by 0x209CD0: void boost::archive::basic_text_oprimitive::save_impl(unsigned int const&, mpl_::bool_&) (basic_text_oprimitive.hpp:130) ==3381580== by 0x2093CF: void boost::archive::basic_text_oprimitive::save(unsigned int const&) (basic_text_oprimitive.hpp:180) ==3381580== by 0x2086C0: void boost::archive::text_oarchive_impl::save(unsigned int const&) (text_oarchive.hpp:65) ==3381580== by 0x207F5F: void boost::archive::save_access::save_primitive(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:93) ==3381580== by 0x207B8B: void boost::archive::detail::save_non_pointer_type::save_primitive::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:237) ==3381580== by 0x2077FE: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:315) ==3381580== by 0x2074C4: void boost::archive::save(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:539) ==3381580== by 0x207205: void boost::archive::detail::common_oarchive::save_override(unsigned int const&) (common_oarchive.hpp:71) ==3381580== by 0x206E6E: void boost::archive::basic_text_oarchive::save_override(unsigned int const&) (basic_text_oarchive.hpp:83) ==3381580== by 0x206B47: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (unsigned int const&) (interface_oarchive.hpp:70) ==3381580== by 0x20677F: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(unsigned int const&) (interface_oarchive.hpp:77) ==3381580== by 0x9C595ED: void AbstractSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (AbstractSrnModel.hpp:83) ==3381580== by 0x9C58772: void boost::serialization::access::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (access.hpp:116) ==3381580== by 0x9C5748C: void boost::serialization::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:68) ==3381580== by 0x9C56682: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:118) ==3381580== by 0x9C55FAD: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==3381580== by 0x9C55A3D: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:258) ==3381580== by 0x9C55607: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:315) ==3381580== by 0x9C551D8: void boost::archive::save(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:539) ==3381580== by 0x9C54E77: void boost::archive::detail::common_oarchive::save_override(AbstractSrnModel const&) (common_oarchive.hpp:71) ==3381580== by 0x9C54B06: void boost::archive::basic_text_oarchive::save_override(AbstractSrnModel const&) (basic_text_oarchive.hpp:83) ==3381580== by 0x9C546E1: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (AbstractSrnModel const&) (interface_oarchive.hpp:70) ==3381580== by 0x9C5436B: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(AbstractSrnModel const&) (interface_oarchive.hpp:77) ==3381580== by 0x9D75156: void NullSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (NullSrnModel.hpp:67) ==3381580== by 0x9D74DAE: void boost::serialization::access::serialize(boost::archive::text_oarchive&, NullSrnModel&, unsigned int) (access.hpp:116) ==3381580== by 0x9D7473E: void boost::serialization::serialize(boost::archive::text_oarchive&, NullSrnModel&, unsigned int) (serialization.hpp:68) ==3381580== by 0x9D73F8E: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, NullSrnModel&, unsigned int) (serialization.hpp:118) ==3381580== by 0x9D73915: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==3381580== by 0x9D75ED5: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, NullSrnModel const&) (oserializer.hpp:258) ==3381580== by 0x9D75DBA: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, NullSrnModel const&) (oserializer.hpp:315) ==3381580== by 0x9D75BDE: void boost::archive::save(boost::archive::text_oarchive&, NullSrnModel const&) (oserializer.hpp:539) ==3381580== by 0x9D75A25: void boost::archive::detail::common_oarchive::save_override(NullSrnModel const&) (common_oarchive.hpp:71) ==3381580== by 0x9D75840: void boost::archive::basic_text_oarchive::save_override(NullSrnModel const&) (basic_text_oarchive.hpp:83) ==3381580== by 0x9D75735: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (NullSrnModel const&) (interface_oarchive.hpp:70) ==3381580== by 0x9D755B4: void boost::serialization::save(boost::archive::text_oarchive&, boost::serialization::nvp const&, unsigned int) (nvp.hpp:48) ==3381580== by 0x9D7546A: boost::serialization::free_saver >::invoke(boost::archive::text_oarchive&, boost::serialization::nvp const&, unsigned int) (split_free.hpp:45) ==3381580== by 0x9D7535C: void boost::serialization::split_free >(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (split_free.hpp:74) ==3381580== by 0x9D75186: void boost::serialization::serialize(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (nvp.hpp:65) ==3381580== by 0x9D74E0B: void boost::serialization::serialize_adl >(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (serialization.hpp:118) ==3381580== by 0x9D74778: void boost::archive::detail::save_non_pointer_type::save_only::invoke >(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:246) ==3381580== by 0x9D73FD1: void boost::archive::detail::save_non_pointer_type::invoke >(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:315) ==3381580== by 0x9D73957: void boost::archive::save const>(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:539) ==3381580== by 0x9D734FF: void boost::archive::detail::common_oarchive::save_override const>(boost::serialization::nvp const&) (common_oarchive.hpp:71) ==3381580== by 0x9D72F52: void boost::archive::basic_text_oarchive::save_override const>(boost::serialization::nvp const&) (basic_text_oarchive.hpp:83) ==3381580== by 0x9D728ED: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< >(boost::serialization::nvp const&) (interface_oarchive.hpp:70) ==3381580== by 0x9D72358: boost::archive::detail::pointer_oserializer::save_object_ptr(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:206) ==3381580== by 0xE36F389: ??? (in /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0) ==3381580== { Memcheck:Value8 obj:/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30 fun:_ZNKSt7num_putIcSt19ostreambuf_iteratorIcSt11char_traitsIcEEE13_M_insert_intImEES3_S3_RSt8ios_basecT_ fun:_ZNSo9_M_insertImEERSoT_ fun:_ZN5boost7archive21basic_text_oprimitiveISoE9save_implIjEEvRKT_RN4mpl_5bool_ILb0EEE fun:_ZN5boost7archive21basic_text_oprimitiveISoE4saveIjEEvRKT_ fun:_ZN5boost7archive18text_oarchive_implINS0_13text_oarchiveEE4saveIjEEvRKT_ fun:_ZN5boost7archive11save_access14save_primitiveINS0_13text_oarchiveEjEEvRT_RKT0_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE14save_primitive6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEKjEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsIjEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanIjEERS3_RKT_ fun:_ZN16AbstractSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE16AbstractSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK16AbstractSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI16AbstractSrnModelEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanI16AbstractSrnModelEERS3_RKT_ fun:_ZN12NullSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE12NullSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI12NullSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI12NullSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK12NullSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK12NullSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK12NullSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI12NullSrnModelEERS3_RKT_ fun:_ZN5boost13serialization4saveINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RKNS0_3nvpIT0_EEj fun:_ZN5boost13serialization10free_saverINS_7archive13text_oarchiveENS0_3nvpI12NullSrnModelEEE6invokeERS3_RKS6_j fun:_ZN5boost13serialization10split_freeINS_7archive13text_oarchiveENS0_3nvpI12NullSrnModelEEEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RNS0_3nvpIT0_EEj fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveENS0_3nvpI12NullSrnModelEEEEvRT_RT0_j fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE9save_only6invokeINS_13serialization3nvpI12NullSrnModelEEEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeINS_13serialization3nvpI12NullSrnModelEEEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEKNS_13serialization3nvpI12NullSrnModelEEEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIKNS_13serialization3nvpI12NullSrnModelEEEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIKNS_13serialization3nvpI12NullSrnModelEEEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsINS_13serialization3nvpI12NullSrnModelEEEERS3_RKT_ fun:_ZNK5boost7archive6detail19pointer_oserializerINS0_13text_oarchiveE12NullSrnModelE15save_object_ptrERNS1_14basic_oarchiveEPKv obj:/usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0 } ==3381580== Conditional jump or move depends on uninitialised value(s) ==3381580== at 0xE4E682D: ??? (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==3381580== by 0xE4E6F99: std::ostreambuf_iterator > std::num_put > >::_M_insert_int(std::ostreambuf_iterator >, std::ios_base&, char, unsigned long) const (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==3381580== by 0xE4F5399: std::ostream& std::ostream::_M_insert(unsigned long) (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==3381580== by 0x209CD0: void boost::archive::basic_text_oprimitive::save_impl(unsigned int const&, mpl_::bool_&) (basic_text_oprimitive.hpp:130) ==3381580== by 0x2093CF: void boost::archive::basic_text_oprimitive::save(unsigned int const&) (basic_text_oprimitive.hpp:180) ==3381580== by 0x2086C0: void boost::archive::text_oarchive_impl::save(unsigned int const&) (text_oarchive.hpp:65) ==3381580== by 0x207F5F: void boost::archive::save_access::save_primitive(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:93) ==3381580== by 0x207B8B: void boost::archive::detail::save_non_pointer_type::save_primitive::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:237) ==3381580== by 0x2077FE: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:315) ==3381580== by 0x2074C4: void boost::archive::save(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:539) ==3381580== by 0x207205: void boost::archive::detail::common_oarchive::save_override(unsigned int const&) (common_oarchive.hpp:71) ==3381580== by 0x206E6E: void boost::archive::basic_text_oarchive::save_override(unsigned int const&) (basic_text_oarchive.hpp:83) ==3381580== by 0x206B47: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (unsigned int const&) (interface_oarchive.hpp:70) ==3381580== by 0x20677F: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(unsigned int const&) (interface_oarchive.hpp:77) ==3381580== by 0x9C595ED: void AbstractSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (AbstractSrnModel.hpp:83) ==3381580== by 0x9C58772: void boost::serialization::access::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (access.hpp:116) ==3381580== by 0x9C5748C: void boost::serialization::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:68) ==3381580== by 0x9C56682: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:118) ==3381580== by 0x9C55FAD: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==3381580== by 0x9C55A3D: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:258) ==3381580== by 0x9C55607: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:315) ==3381580== by 0x9C551D8: void boost::archive::save(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:539) ==3381580== by 0x9C54E77: void boost::archive::detail::common_oarchive::save_override(AbstractSrnModel const&) (common_oarchive.hpp:71) ==3381580== by 0x9C54B06: void boost::archive::basic_text_oarchive::save_override(AbstractSrnModel const&) (basic_text_oarchive.hpp:83) ==3381580== by 0x9C546E1: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (AbstractSrnModel const&) (interface_oarchive.hpp:70) ==3381580== by 0x9C5436B: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(AbstractSrnModel const&) (interface_oarchive.hpp:77) ==3381580== by 0x9D75156: void NullSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (NullSrnModel.hpp:67) ==3381580== by 0x9D74DAE: void boost::serialization::access::serialize(boost::archive::text_oarchive&, NullSrnModel&, unsigned int) (access.hpp:116) ==3381580== by 0x9D7473E: void boost::serialization::serialize(boost::archive::text_oarchive&, NullSrnModel&, unsigned int) (serialization.hpp:68) ==3381580== by 0x9D73F8E: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, NullSrnModel&, unsigned int) (serialization.hpp:118) ==3381580== by 0x9D73915: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==3381580== by 0x9D75ED5: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, NullSrnModel const&) (oserializer.hpp:258) ==3381580== by 0x9D75DBA: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, NullSrnModel const&) (oserializer.hpp:315) ==3381580== by 0x9D75BDE: void boost::archive::save(boost::archive::text_oarchive&, NullSrnModel const&) (oserializer.hpp:539) ==3381580== by 0x9D75A25: void boost::archive::detail::common_oarchive::save_override(NullSrnModel const&) (common_oarchive.hpp:71) ==3381580== by 0x9D75840: void boost::archive::basic_text_oarchive::save_override(NullSrnModel const&) (basic_text_oarchive.hpp:83) ==3381580== by 0x9D75735: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (NullSrnModel const&) (interface_oarchive.hpp:70) ==3381580== by 0x9D755B4: void boost::serialization::save(boost::archive::text_oarchive&, boost::serialization::nvp const&, unsigned int) (nvp.hpp:48) ==3381580== by 0x9D7546A: boost::serialization::free_saver >::invoke(boost::archive::text_oarchive&, boost::serialization::nvp const&, unsigned int) (split_free.hpp:45) ==3381580== by 0x9D7535C: void boost::serialization::split_free >(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (split_free.hpp:74) ==3381580== by 0x9D75186: void boost::serialization::serialize(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (nvp.hpp:65) ==3381580== by 0x9D74E0B: void boost::serialization::serialize_adl >(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (serialization.hpp:118) ==3381580== by 0x9D74778: void boost::archive::detail::save_non_pointer_type::save_only::invoke >(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:246) ==3381580== by 0x9D73FD1: void boost::archive::detail::save_non_pointer_type::invoke >(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:315) ==3381580== by 0x9D73957: void boost::archive::save const>(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:539) ==3381580== by 0x9D734FF: void boost::archive::detail::common_oarchive::save_override const>(boost::serialization::nvp const&) (common_oarchive.hpp:71) ==3381580== by 0x9D72F52: void boost::archive::basic_text_oarchive::save_override const>(boost::serialization::nvp const&) (basic_text_oarchive.hpp:83) ==3381580== by 0x9D728ED: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< >(boost::serialization::nvp const&) (interface_oarchive.hpp:70) ==3381580== by 0x9D72358: boost::archive::detail::pointer_oserializer::save_object_ptr(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:206) ==3381580== by 0xE36F389: ??? (in /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0) ==3381580== { Memcheck:Cond obj:/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30 fun:_ZNKSt7num_putIcSt19ostreambuf_iteratorIcSt11char_traitsIcEEE13_M_insert_intImEES3_S3_RSt8ios_basecT_ fun:_ZNSo9_M_insertImEERSoT_ fun:_ZN5boost7archive21basic_text_oprimitiveISoE9save_implIjEEvRKT_RN4mpl_5bool_ILb0EEE fun:_ZN5boost7archive21basic_text_oprimitiveISoE4saveIjEEvRKT_ fun:_ZN5boost7archive18text_oarchive_implINS0_13text_oarchiveEE4saveIjEEvRKT_ fun:_ZN5boost7archive11save_access14save_primitiveINS0_13text_oarchiveEjEEvRT_RKT0_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE14save_primitive6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEKjEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsIjEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanIjEERS3_RKT_ fun:_ZN16AbstractSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE16AbstractSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK16AbstractSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI16AbstractSrnModelEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanI16AbstractSrnModelEERS3_RKT_ fun:_ZN12NullSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE12NullSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI12NullSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI12NullSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK12NullSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK12NullSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK12NullSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI12NullSrnModelEERS3_RKT_ fun:_ZN5boost13serialization4saveINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RKNS0_3nvpIT0_EEj fun:_ZN5boost13serialization10free_saverINS_7archive13text_oarchiveENS0_3nvpI12NullSrnModelEEE6invokeERS3_RKS6_j fun:_ZN5boost13serialization10split_freeINS_7archive13text_oarchiveENS0_3nvpI12NullSrnModelEEEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RNS0_3nvpIT0_EEj fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveENS0_3nvpI12NullSrnModelEEEEvRT_RT0_j fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE9save_only6invokeINS_13serialization3nvpI12NullSrnModelEEEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeINS_13serialization3nvpI12NullSrnModelEEEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEKNS_13serialization3nvpI12NullSrnModelEEEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIKNS_13serialization3nvpI12NullSrnModelEEEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIKNS_13serialization3nvpI12NullSrnModelEEEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsINS_13serialization3nvpI12NullSrnModelEEEERS3_RKT_ fun:_ZNK5boost7archive6detail19pointer_oserializerINS0_13text_oarchiveE12NullSrnModelE15save_object_ptrERNS1_14basic_oarchiveEPKv obj:/usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0 } ==3381580== ==3381580== FILE DESCRIPTORS: 9 open (3 std) at exit. ==3381580== Open file descriptor 12: ==3381580== at 0xEFA122D: pipe (pipe.c:29) ==3381580== by 0x1891207D: ??? ==3381580== by 0x140414CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3381580== by 0x10C3D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3381580== by 0x10BD6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3381580== by 0xF8CDD38: PetscInitialize (pinit.c:924) ==3381580== by 0xE2FF58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3381580== by 0xE2FF5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3381580== by 0x1DFCCE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3381580== by 0x1D7FD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3381580== by 0x1DB8B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3381580== by 0x1DB758: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3381580== by 0x1DBDEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3381580== by 0x1D62C0: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==3381580== ==3381580== Open file descriptor 8: /dev/shm/open_mpi.0000 ==3381580== at 0xEFA5BCC: __open_nocancel (open64_nocancel.c:39) ==3381580== by 0xEF29C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==3381580== by 0xE337822: ??? ==3381580== by 0xE33796F: ??? ==3381580== by 0x140E66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3381580== by 0x140E6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3381580== by 0x1409C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3381580== by 0x140412DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3381580== by 0x10C3D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3381580== by 0x10BD6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3381580== by 0xF8CDD38: PetscInitialize (pinit.c:924) ==3381580== by 0xE2FF58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3381580== by 0xE2FF5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3381580== by 0x1DFCCE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3381580== by 0x1D7FD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3381580== by 0x1DB8B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3381580== by 0x1DB758: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3381580== by 0x1DBDEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3381580== by 0x1D62C0: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==3381580== ==3381580== Open file descriptor 117: ==3381580== ==3381580== ==3381580== Open file descriptor 108: ==3381580== ==3381580== ==3381580== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==3381580== ==3381580== ==3381580== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==3381580== ==3381580== ==3381580== ==3381580== HEAP SUMMARY: ==3381580== in use at exit: 700,704 bytes in 9,374 blocks ==3381580== total heap usage: 6,953,043 allocs, 6,943,669 frees, 8,023,265,039 bytes allocated ==3381580== ==3381580== 552 bytes in 1 blocks are definitely lost in loss record 36 of 62 ==3381580== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==3381580== by 0x191E0C13: ??? ==3381580== by 0x191E122C: ??? ==3381580== by 0x191544B7: ??? ==3381580== by 0x10BA315A: ompi_proc_complete_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3381580== by 0x10C3DA97: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3381580== by 0x10BD6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3381580== by 0xF8CDD38: PetscInitialize (pinit.c:924) ==3381580== by 0xE2FF58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3381580== by 0xE2FF5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3381580== by 0x1DFCCE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3381580== by 0x1D7FD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3381580== by 0x1DB8B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3381580== by 0x1DB758: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3381580== by 0x1DBDEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3381580== by 0x1D62C0: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==3381580== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* fun:ompi_proc_complete_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3381580== 84,459 (136 direct, 84,323 indirect) bytes in 1 blocks are definitely lost in loss record 59 of 62 ==3381580== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==3381580== by 0x1A75374E: ??? ==3381580== by 0x1A753E0B: ??? ==3381580== by 0x1A756F56: ??? ==3381580== by 0x1A74C65D: ??? ==3381580== by 0x1A74CFA3: ??? ==3381580== by 0x14152F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==3381580== by 0x1412EAE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==3381580== by 0x140DFCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3381580== by 0x1400CEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3381580== by 0x18912F03: ??? ==3381580== by 0x140414CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3381580== by 0x10C3D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3381580== by 0x10BD6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3381580== by 0xF8CDD38: PetscInitialize (pinit.c:924) ==3381580== by 0xE2FF58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3381580== by 0xE2FF5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3381580== by 0x1DFCCE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3381580== by 0x1D7FD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3381580== by 0x1DB8B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3381580== by 0x1DB758: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3381580== by 0x1DBDEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3381580== by 0x1D62C0: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==3381580== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* obj:* obj:* obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2 fun:hwloc_topology_load fun:opal_hwloc_base_get_topology fun:orte_ess_base_proc_binding obj:* fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3381580== LEAK SUMMARY: ==3381580== definitely lost: 688 bytes in 2 blocks ==3381580== indirectly lost: 1,760 bytes in 16 blocks ==3381580== possibly lost: 0 bytes in 0 blocks ==3381580== still reachable: 1,563 bytes in 7 blocks ==3381580== suppressed: 696,693 bytes in 9,349 blocks ==3381580== Reachable blocks (those to which a pointer was found) are not shown. ==3381580== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3381580== ==3381580== Use --track-origins=yes to see where uninitialised values come from ==3381580== For lists of detected and suppressed errors, rerun with: -s ==3381580== ERROR SUMMARY: 117 errors from 7 contexts (suppressed: 28 from 28)