==3567889== Memcheck, a memory error detector
==3567889== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==3567889== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==3567889== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedVsBidomainProblem -malloc_debug -malloc_dump -memory_info
==3567889== Parent PID: 3546972
==3567889== 
==3567889== WARNING: pwritev(vector[...]) is an obsolete suppression line not supported in valgrind 3.15 or later.
==3567889== You should replace [...] by a specific index such as [0] or [1] or [2] or similar
==3567889== 
==3567889== Syscall param socketcall.getsockopt(optlen) points to uninitialised byte(s)
==3567889==    at 0xA8FD79E: getsockopt_syscall (getsockopt.c:29)
==3567889==    by 0xA8FD79E: getsockopt (getsockopt.c:94)
==3567889==    by 0x14A17157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==3567889==    by 0x14A1EA1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==3567889==    by 0x14A25DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==3567889==    by 0x149253C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==3567889==    by 0x1489EE4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so)
==3567889==    by 0x1405DE6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so)
==3567889==    by 0xF8634CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==3567889==    by 0xBFFE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==3567889==    by 0xBF97D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==3567889==    by 0xAC8ED38: PetscInitialize (pinit.c:924)
==3567889==    by 0xA1D4717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==3567889==    by 0xA1D4765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==3567889==    by 0x1374BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==3567889==    by 0x13200F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==3567889==    by 0x13546E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==3567889==    by 0x13530E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==3567889==    by 0x1359A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==3567889==    by 0x130340: main (TestExtendedVsBidomainProblem.cpp:19)
==3567889==  Address 0x1ffeffdf9c is on thread 1's stack
==3567889==  in frame #2, created by pmix_ptl_base_make_connection (???:)
==3567889== 
{
   <insert_a_suppression_name_here>
   Memcheck:Param
   socketcall.getsockopt(optlen)
   fun:getsockopt_syscall
   fun:getsockopt
   fun:pmix_ptl_base_set_timeout
   fun:pmix_ptl_base_make_connection
   obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2
   fun:PMIx_Init
   fun:ext3x_client_init
   obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so
   fun:orte_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==3567889== Syscall param socketcall.getsockopt(optlen_out) points to uninitialised byte(s)
==3567889==    at 0xA8FD79E: getsockopt_syscall (getsockopt.c:29)
==3567889==    by 0xA8FD79E: getsockopt (getsockopt.c:94)
==3567889==    by 0x14A17157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==3567889==    by 0x14A1EA1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==3567889==    by 0x14A25DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==3567889==    by 0x149253C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==3567889==    by 0x1489EE4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so)
==3567889==    by 0x1405DE6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so)
==3567889==    by 0xF8634CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==3567889==    by 0xBFFE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==3567889==    by 0xBF97D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==3567889==    by 0xAC8ED38: PetscInitialize (pinit.c:924)
==3567889==    by 0xA1D4717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==3567889==    by 0xA1D4765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==3567889==    by 0x1374BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==3567889==    by 0x13200F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==3567889==    by 0x13546E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==3567889==    by 0x13530E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==3567889==    by 0x1359A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==3567889==    by 0x130340: main (TestExtendedVsBidomainProblem.cpp:19)
==3567889==  Address 0x1ffeffdf9c is on thread 1's stack
==3567889==  in frame #2, created by pmix_ptl_base_make_connection (???:)
==3567889== 
{
   <insert_a_suppression_name_here>
   Memcheck:Param
   socketcall.getsockopt(optlen_out)
   fun:getsockopt_syscall
   fun:getsockopt
   fun:pmix_ptl_base_set_timeout
   fun:pmix_ptl_base_make_connection
   obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2
   fun:PMIx_Init
   fun:ext3x_client_init
   obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so
   fun:orte_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==3567889== Syscall param setsockopt(optlen) contains uninitialised byte(s)
==3567889==    at 0xA8FDC7E: setsockopt_syscall (setsockopt.c:29)
==3567889==    by 0xA8FDC7E: setsockopt (setsockopt.c:95)
==3567889==    by 0x14A1EBA9: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==3567889==    by 0x14A25DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==3567889==    by 0x149253C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==3567889==    by 0x1489EE4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so)
==3567889==    by 0x1405DE6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so)
==3567889==    by 0xF8634CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==3567889==    by 0xBFFE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==3567889==    by 0xBF97D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==3567889==    by 0xAC8ED38: PetscInitialize (pinit.c:924)
==3567889==    by 0xA1D4717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==3567889==    by 0xA1D4765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==3567889==    by 0x1374BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==3567889==    by 0x13200F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==3567889==    by 0x13546E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==3567889==    by 0x13530E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==3567889==    by 0x1359A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==3567889==    by 0x130340: main (TestExtendedVsBidomainProblem.cpp:19)
==3567889== 
{
   <insert_a_suppression_name_here>
   Memcheck:Param
   setsockopt(optlen)
   fun:setsockopt_syscall
   fun:setsockopt
   fun:pmix_ptl_base_make_connection
   obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2
   fun:PMIx_Init
   fun:ext3x_client_init
   obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so
   fun:orte_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==3567889== Syscall param pwrite64(buf) points to uninitialised byte(s)
==3567889==    at 0xA8E89EF: __libc_pwrite64 (pwrite64.c:25)
==3567889==    by 0xA8E89EF: pwrite (pwrite64.c:23)
==3567889==    by 0x186949D2: mca_fbtl_posix_pwritev (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_fbtl_posix.so)
==3567889==    by 0x186A4419: mca_common_ompio_file_write (in /usr/lib/x86_64-linux-gnu/libmca_common_ompio.so.41.29.2)
==3567889==    by 0x186A479A: mca_common_ompio_file_write_at (in /usr/lib/x86_64-linux-gnu/libmca_common_ompio.so.41.29.2)
==3567889==    by 0x1858F89A: mca_io_ompio_file_write_at (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_io_ompio.so)
==3567889==    by 0xBF8B6A7: PMPI_File_write_at (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==3567889==    by 0xC7E6FEB: ??? (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC6264ED: H5FD_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC609313: H5F__accum_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC704442: H5PB_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC610DEA: H5F_block_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC59AE98: H5C__flush_single_entry (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC7DA3F9: H5C_apply_candidate_list (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC7DB9CA: H5AC__run_sync_point (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC7DC47E: H5AC__flush_entries (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC57754C: H5AC_flush (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC60F936: ??? (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC6103FE: H5F__dest (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC613BB2: H5F_try_close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC613EFB: H5F__close_cb (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC68351F: H5I_dec_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC6835EA: H5I_dec_app_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC610831: H5F__close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC605881: H5Fclose (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xA102967: Hdf5DataWriter::Close() (Hdf5DataWriter.cpp:1100)
==3567889==    by 0xA0FD647: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:273)
==3567889==    by 0xA0FD6ED: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:283)
==3567889==    by 0x68749DF: AbstractCardiacProblem<1u, 1u, 2u>::CloseFilesAndPostProcess() (AbstractCardiacProblem.cpp:597)
==3567889==    by 0x687457F: AbstractCardiacProblem<1u, 1u, 2u>::Solve() (AbstractCardiacProblem.cpp:582)
==3567889==    by 0x13A877: TestExtendedVsBidomainProblem::RunBidomain() (TestExtendedVsBidomainProblem.hpp:226)
==3567889==    by 0x13A9DE: TestExtendedVsBidomainProblem::TestCompareStimulationOfFirstCell() (TestExtendedVsBidomainProblem.hpp:233)
==3567889==    by 0x147B38: TestDescription_TestExtendedVsBidomainProblem_TestCompareStimulationOfFirstCell::runTest() (TestExtendedVsBidomainProblem.cpp:31)
==3567889==    by 0x13160A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==3567889==    by 0x13571C: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==3567889==    by 0x135601: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==3567889==    by 0x1354A7: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==3567889==    by 0x13530E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==3567889==    by 0x1359A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==3567889==    by 0x130340: main (TestExtendedVsBidomainProblem.cpp:19)
==3567889==  Address 0x163bb7ee is 62 bytes inside a block of size 320 alloc'd
==3567889==    at 0x4848899: malloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==3567889==    by 0xC59AE26: H5C__flush_single_entry (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC7DA3F9: H5C_apply_candidate_list (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC7DB9CA: H5AC__run_sync_point (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC7DC47E: H5AC__flush_entries (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC57754C: H5AC_flush (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC60F936: ??? (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC6103FE: H5F__dest (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC613BB2: H5F_try_close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC613EFB: H5F__close_cb (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC68351F: H5I_dec_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC6835EA: H5I_dec_app_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC610831: H5F__close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xC605881: H5Fclose (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0)
==3567889==    by 0xA102967: Hdf5DataWriter::Close() (Hdf5DataWriter.cpp:1100)
==3567889==    by 0xA0FD647: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:273)
==3567889==    by 0xA0FD6ED: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:283)
==3567889==    by 0x68749DF: AbstractCardiacProblem<1u, 1u, 2u>::CloseFilesAndPostProcess() (AbstractCardiacProblem.cpp:597)
==3567889==    by 0x687457F: AbstractCardiacProblem<1u, 1u, 2u>::Solve() (AbstractCardiacProblem.cpp:582)
==3567889==    by 0x13A877: TestExtendedVsBidomainProblem::RunBidomain() (TestExtendedVsBidomainProblem.hpp:226)
==3567889==    by 0x13A9DE: TestExtendedVsBidomainProblem::TestCompareStimulationOfFirstCell() (TestExtendedVsBidomainProblem.hpp:233)
==3567889==    by 0x147B38: TestDescription_TestExtendedVsBidomainProblem_TestCompareStimulationOfFirstCell::runTest() (TestExtendedVsBidomainProblem.cpp:31)
==3567889==    by 0x13160A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==3567889==    by 0x13571C: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==3567889==    by 0x135601: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==3567889==    by 0x1354A7: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==3567889==    by 0x13530E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==3567889==    by 0x1359A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==3567889==    by 0x130340: main (TestExtendedVsBidomainProblem.cpp:19)
==3567889== 
{
   <insert_a_suppression_name_here>
   Memcheck:Param
   pwrite64(buf)
   fun:__libc_pwrite64
   fun:pwrite
   fun:mca_fbtl_posix_pwritev
   fun:mca_common_ompio_file_write
   fun:mca_common_ompio_file_write_at
   fun:mca_io_ompio_file_write_at
   fun:PMPI_File_write_at
   obj:/usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0
   fun:H5FD_write
   fun:H5F__accum_write
   fun:H5PB_write
   fun:H5F_block_write
   fun:H5C__flush_single_entry
   fun:H5C_apply_candidate_list
   fun:H5AC__run_sync_point
   fun:H5AC__flush_entries
   fun:H5AC_flush
   obj:/usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0
   fun:H5F__dest
   fun:H5F_try_close
   fun:H5F__close_cb
   fun:H5I_dec_ref
   fun:H5I_dec_app_ref
   fun:H5F__close
   fun:H5Fclose
   fun:_ZN14Hdf5DataWriter5CloseEv
   fun:_ZN14Hdf5DataWriterD1Ev
   fun:_ZN14Hdf5DataWriterD0Ev
   fun:_ZN22AbstractCardiacProblemILj1ELj1ELj2EE24CloseFilesAndPostProcessEv
   fun:_ZN22AbstractCardiacProblemILj1ELj1ELj2EE5SolveEv
   fun:_ZN29TestExtendedVsBidomainProblem11RunBidomainEv
   fun:_ZN29TestExtendedVsBidomainProblem33TestCompareStimulationOfFirstCellEv
   fun:_ZN79TestDescription_TestExtendedVsBidomainProblem_TestCompareStimulationOfFirstCell7runTestEv
   fun:_ZN7CxxTest19RealTestDescription3runEv
   fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE
   fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==3567889== 
==3567889== FILE DESCRIPTORS: 9 open (3 std) at exit.
==3567889== Open file descriptor 12:
==3567889==    at 0xA8EB22D: pipe (pipe.c:29)
==3567889==    by 0x1405E07D: ???
==3567889==    by 0xF8634CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==3567889==    by 0xBFFE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==3567889==    by 0xBF97D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==3567889==    by 0xAC8ED38: PetscInitialize (pinit.c:924)
==3567889==    by 0xA1D4717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==3567889==    by 0xA1D4765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==3567889==    by 0x1374BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==3567889==    by 0x13200F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==3567889==    by 0x13546E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==3567889==    by 0x13530E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==3567889==    by 0x1359A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==3567889==    by 0x130340: main (TestExtendedVsBidomainProblem.cpp:19)
==3567889== 
==3567889== Open file descriptor 8: /dev/shm/open_mpi.0000
==3567889==    at 0xA8EFBCC: __open_nocancel (open64_nocancel.c:39)
==3567889==    by 0xA873C4F: shm_open@@GLIBC_2.34 (shm_open.c:40)
==3567889==    by 0xA20C822: ???
==3567889==    by 0xA20C96F: ???
==3567889==    by 0xF9086DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==3567889==    by 0xF908938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==3567889==    by 0xF8BE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==3567889==    by 0xF8632DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==3567889==    by 0xBFFE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==3567889==    by 0xBF97D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==3567889==    by 0xAC8ED38: PetscInitialize (pinit.c:924)
==3567889==    by 0xA1D4717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==3567889==    by 0xA1D4765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==3567889==    by 0x1374BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==3567889==    by 0x13200F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==3567889==    by 0x13546E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==3567889==    by 0x13530E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==3567889==    by 0x1359A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==3567889==    by 0x130340: main (TestExtendedVsBidomainProblem.cpp:19)
==3567889== 
==3567889== Open file descriptor 117:
==3567889==    <inherited from parent>
==3567889== 
==3567889== Open file descriptor 110:
==3567889==    <inherited from parent>
==3567889== 
==3567889== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedVsBidomainProblem_valgrind.txt
==3567889==    <inherited from parent>
==3567889== 
==3567889== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==3567889==    <inherited from parent>
==3567889== 
==3567889== 
==3567889== HEAP SUMMARY:
==3567889==     in use at exit: 707,511 bytes in 9,499 blocks
==3567889==   total heap usage: 467,921 allocs, 458,422 frees, 1,461,060,045 bytes allocated
==3567889== 
==3567889== 448 bytes in 8 blocks are definitely lost in loss record 55 of 83
==3567889==    at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==3567889==    by 0x94037D5: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442)
==3567889==    by 0x9401A6E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14)
==3567889==    by 0x9404A14: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18)
==3567889==    by 0x9404A39: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064)
==3567889==    by 0x400647D: call_init.part.0 (dl-init.c:70)
==3567889==    by 0x4006567: call_init (dl-init.c:33)
==3567889==    by 0x4006567: _dl_init (dl-init.c:117)
==3567889==    by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2)
==3567889==    by 0x3: ???
==3567889==    by 0x1FFF00030E: ???
==3567889==    by 0x1FFF00037F: ???
==3567889==    by 0x1FFF00038D: ???
==3567889==    by 0x1FFF00039A: ???
==3567889== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: definite
   fun:_Znwm
   fun:_ZN13OpenSimplex2S17initLatticePointsEv
   fun:_ZN13OpenSimplex2S11InitializerC1Ev
   fun:_Z41__static_initialization_and_destruction_0ii
   fun:_GLOBAL__sub_I_OpenSimplex2S.cpp
   fun:call_init.part.0
   fun:call_init
   fun:_dl_init
   obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2
   obj:*
   obj:*
   obj:*
   obj:*
   obj:*
}
==3567889== 552 bytes in 1 blocks are definitely lost in loss record 57 of 83
==3567889==    at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==3567889==    by 0x1492CC13: ???
==3567889==    by 0x1492D22C: ???
==3567889==    by 0x148A04B7: ???
==3567889==    by 0xBF6415A: ompi_proc_complete_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==3567889==    by 0xBFFEA97: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==3567889==    by 0xBF97D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==3567889==    by 0xAC8ED38: PetscInitialize (pinit.c:924)
==3567889==    by 0xA1D4717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==3567889==    by 0xA1D4765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==3567889==    by 0x1374BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==3567889==    by 0x13200F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==3567889==    by 0x13546E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==3567889==    by 0x13530E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==3567889==    by 0x1359A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==3567889==    by 0x130340: main (TestExtendedVsBidomainProblem.cpp:19)
==3567889== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: definite
   fun:calloc
   obj:*
   obj:*
   obj:*
   fun:ompi_proc_complete_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==3567889== 84,459 (136 direct, 84,323 indirect) bytes in 1 blocks are definitely lost in loss record 80 of 83
==3567889==    at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==3567889==    by 0x15A9F74E: ???
==3567889==    by 0x15A9FE0B: ???
==3567889==    by 0x15AA2F56: ???
==3567889==    by 0x15A9865D: ???
==3567889==    by 0x15A98FA3: ???
==3567889==    by 0xF974F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==3567889==    by 0xF950AE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==3567889==    by 0xF901CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==3567889==    by 0xF82EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==3567889==    by 0x1405EF03: ???
==3567889==    by 0xF8634CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==3567889==    by 0xBFFE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==3567889==    by 0xBF97D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==3567889==    by 0xAC8ED38: PetscInitialize (pinit.c:924)
==3567889==    by 0xA1D4717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==3567889==    by 0xA1D4765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==3567889==    by 0x1374BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==3567889==    by 0x13200F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==3567889==    by 0x13546E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==3567889==    by 0x13530E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==3567889==    by 0x1359A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==3567889==    by 0x130340: main (TestExtendedVsBidomainProblem.cpp:19)
==3567889== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: definite
   fun:calloc
   obj:*
   obj:*
   obj:*
   obj:*
   obj:*
   obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2
   fun:hwloc_topology_load
   fun:opal_hwloc_base_get_topology
   fun:orte_ess_base_proc_binding
   obj:*
   fun:orte_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==3567889== LEAK SUMMARY:
==3567889==    definitely lost: 1,136 bytes in 10 blocks
==3567889==    indirectly lost: 1,760 bytes in 16 blocks
==3567889==      possibly lost: 0 bytes in 0 blocks
==3567889==    still reachable: 7,355 bytes in 110 blocks
==3567889==         suppressed: 697,260 bytes in 9,363 blocks
==3567889== Reachable blocks (those to which a pointer was found) are not shown.
==3567889== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==3567889== 
==3567889== Use --track-origins=yes to see where uninitialised values come from
==3567889== For lists of detected and suppressed errors, rerun with: -s
==3567889== ERROR SUMMARY: 33 errors from 7 contexts (suppressed: 32 from 32)
