==3547697== Memcheck, a memory error detector ==3547697== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==3547697== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==3547697== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryElement -malloc_debug -malloc_dump -memory_info ==3547697== Parent PID: 3546972 ==3547697== ==3547697== WARNING: pwritev(vector[...]) is an obsolete suppression line not supported in valgrind 3.15 or later. ==3547697== You should replace [...] by a specific index such as [0] or [1] or [2] or similar ==3547697== ==3547697== Syscall param socketcall.getsockopt(optlen) points to uninitialised byte(s) ==3547697== at 0x7A5E79E: getsockopt_syscall (getsockopt.c:29) ==3547697== by 0x7A5E79E: getsockopt (getsockopt.c:94) ==3547697== by 0x1073A157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547697== by 0x10741A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547697== by 0x10748DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547697== by 0x106483C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547697== by 0x105C1E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==3547697== by 0xFD80E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==3547697== by 0xB6B74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3547697== by 0x769D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547697== by 0x7636D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547697== by 0x630BD38: PetscInitialize (pinit.c:924) ==3547697== by 0x61DF717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3547697== by 0x61DF765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3547697== by 0x117ACD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3547697== by 0x113565: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3547697== by 0x115B4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3547697== by 0x1159EA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547697== by 0x116081: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547697== by 0x111895: main (TestImmersedBoundaryElement.cpp:19) ==3547697== Address 0x1ffeffdf9c is on thread 1's stack ==3547697== in frame #2, created by pmix_ptl_base_make_connection (???:) ==3547697== { Memcheck:Param socketcall.getsockopt(optlen) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547697== Syscall param socketcall.getsockopt(optlen_out) points to uninitialised byte(s) ==3547697== at 0x7A5E79E: getsockopt_syscall (getsockopt.c:29) ==3547697== by 0x7A5E79E: getsockopt (getsockopt.c:94) ==3547697== by 0x1073A157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547697== by 0x10741A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547697== by 0x10748DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547697== by 0x106483C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547697== by 0x105C1E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==3547697== by 0xFD80E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==3547697== by 0xB6B74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3547697== by 0x769D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547697== by 0x7636D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547697== by 0x630BD38: PetscInitialize (pinit.c:924) ==3547697== by 0x61DF717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3547697== by 0x61DF765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3547697== by 0x117ACD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3547697== by 0x113565: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3547697== by 0x115B4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3547697== by 0x1159EA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547697== by 0x116081: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547697== by 0x111895: main (TestImmersedBoundaryElement.cpp:19) ==3547697== Address 0x1ffeffdf9c is on thread 1's stack ==3547697== in frame #2, created by pmix_ptl_base_make_connection (???:) ==3547697== { Memcheck:Param socketcall.getsockopt(optlen_out) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547697== Syscall param setsockopt(optlen) contains uninitialised byte(s) ==3547697== at 0x7A5EC7E: setsockopt_syscall (setsockopt.c:29) ==3547697== by 0x7A5EC7E: setsockopt (setsockopt.c:95) ==3547697== by 0x10741BA9: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547697== by 0x10748DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547697== by 0x106483C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547697== by 0x105C1E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==3547697== by 0xFD80E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==3547697== by 0xB6B74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3547697== by 0x769D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547697== by 0x7636D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547697== by 0x630BD38: PetscInitialize (pinit.c:924) ==3547697== by 0x61DF717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3547697== by 0x61DF765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3547697== by 0x117ACD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3547697== by 0x113565: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3547697== by 0x115B4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3547697== by 0x1159EA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547697== by 0x116081: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547697== by 0x111895: main (TestImmersedBoundaryElement.cpp:19) ==3547697== { Memcheck:Param setsockopt(optlen) fun:setsockopt_syscall fun:setsockopt fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547697== ==3547697== FILE DESCRIPTORS: 9 open (3 std) at exit. ==3547697== Open file descriptor 12: ==3547697== at 0x7A4C22D: pipe (pipe.c:29) ==3547697== by 0xFD8107D: ??? ==3547697== by 0xB6B74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3547697== by 0x769D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547697== by 0x7636D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547697== by 0x630BD38: PetscInitialize (pinit.c:924) ==3547697== by 0x61DF717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3547697== by 0x61DF765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3547697== by 0x117ACD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3547697== by 0x113565: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3547697== by 0x115B4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3547697== by 0x1159EA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547697== by 0x116081: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547697== by 0x111895: main (TestImmersedBoundaryElement.cpp:19) ==3547697== ==3547697== Open file descriptor 8: /dev/shm/open_mpi.0000 ==3547697== at 0x7A50BCC: __open_nocancel (open64_nocancel.c:39) ==3547697== by 0x79D4C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==3547697== by 0x7595822: ??? ==3547697== by 0x759596F: ??? ==3547697== by 0xB75E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3547697== by 0xB75E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3547697== by 0xB714922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3547697== by 0xB6B72DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3547697== by 0x769D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547697== by 0x7636D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547697== by 0x630BD38: PetscInitialize (pinit.c:924) ==3547697== by 0x61DF717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3547697== by 0x61DF765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3547697== by 0x117ACD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3547697== by 0x113565: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3547697== by 0x115B4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3547697== by 0x1159EA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547697== by 0x116081: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547697== by 0x111895: main (TestImmersedBoundaryElement.cpp:19) ==3547697== ==3547697== Open file descriptor 117: ==3547697== ==3547697== ==3547697== Open file descriptor 110: ==3547697== ==3547697== ==3547697== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryElement_valgrind.txt ==3547697== ==3547697== ==3547697== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==3547697== ==3547697== ==3547697== ==3547697== HEAP SUMMARY: ==3547697== in use at exit: 707,191 bytes in 9,491 blocks ==3547697== total heap usage: 49,538 allocs, 40,047 frees, 1,353,386,912 bytes allocated ==3547697== ==3547697== 136 bytes in 1 blocks are definitely lost in loss record 35 of 78 ==3547697== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==3547697== by 0x118E36: TestImmersedBoundaryElement::Test1DMethods() (TestImmersedBoundaryElement.hpp:94) ==3547697== by 0x1197FA: TestDescription_TestImmersedBoundaryElement_Test1DMethods::runTest() (TestImmersedBoundaryElement.cpp:37) ==3547697== by 0x112B60: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==3547697== by 0x115DF8: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==3547697== by 0x115CDD: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==3547697== by 0x115B83: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==3547697== by 0x1159EA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547697== by 0x116081: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547697== by 0x111895: main (TestImmersedBoundaryElement.cpp:19) ==3547697== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN27TestImmersedBoundaryElement13Test1DMethodsEv fun:_ZN57TestDescription_TestImmersedBoundaryElement_Test1DMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547697== 136 bytes in 1 blocks are definitely lost in loss record 36 of 78 ==3547697== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==3547697== by 0x118E89: TestImmersedBoundaryElement::Test1DMethods() (TestImmersedBoundaryElement.hpp:95) ==3547697== by 0x1197FA: TestDescription_TestImmersedBoundaryElement_Test1DMethods::runTest() (TestImmersedBoundaryElement.cpp:37) ==3547697== by 0x112B60: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==3547697== by 0x115DF8: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==3547697== by 0x115CDD: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==3547697== by 0x115B83: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==3547697== by 0x1159EA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547697== by 0x116081: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547697== by 0x111895: main (TestImmersedBoundaryElement.cpp:19) ==3547697== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN27TestImmersedBoundaryElement13Test1DMethodsEv fun:_ZN57TestDescription_TestImmersedBoundaryElement_Test1DMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547697== 448 bytes in 8 blocks are definitely lost in loss record 53 of 78 ==3547697== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==3547697== by 0x55347D5: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==3547697== by 0x5532A6E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==3547697== by 0x5535A14: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==3547697== by 0x5535A39: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==3547697== by 0x400647D: call_init.part.0 (dl-init.c:70) ==3547697== by 0x4006567: call_init (dl-init.c:33) ==3547697== by 0x4006567: _dl_init (dl-init.c:117) ==3547697== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==3547697== by 0x3: ??? ==3547697== by 0x1FFF000316: ??? ==3547697== by 0x1FFF000384: ??? ==3547697== by 0x1FFF000392: ??? ==3547697== by 0x1FFF00039F: ??? ==3547697== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==3547697== 552 bytes in 1 blocks are definitely lost in loss record 55 of 78 ==3547697== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==3547697== by 0x1064FC13: ??? ==3547697== by 0x1065022C: ??? ==3547697== by 0x105C34B7: ??? ==3547697== by 0x760315A: ompi_proc_complete_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547697== by 0x769DA97: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547697== by 0x7636D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547697== by 0x630BD38: PetscInitialize (pinit.c:924) ==3547697== by 0x61DF717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3547697== by 0x61DF765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3547697== by 0x117ACD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3547697== by 0x113565: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3547697== by 0x115B4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3547697== by 0x1159EA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547697== by 0x116081: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547697== by 0x111895: main (TestImmersedBoundaryElement.cpp:19) ==3547697== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* fun:ompi_proc_complete_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547697== 685,281 (136 direct, 685,145 indirect) bytes in 1 blocks are definitely lost in loss record 78 of 78 ==3547697== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==3547697== by 0x117C274E: ??? ==3547697== by 0x117C2E0B: ??? ==3547697== by 0x117C5F56: ??? ==3547697== by 0x117BB65D: ??? ==3547697== by 0x117BBFA3: ??? ==3547697== by 0xB7CAF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==3547697== by 0xB7A6AE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==3547697== by 0xB757CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3547697== by 0xB682EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3547697== by 0xFD81F03: ??? ==3547697== by 0xB6B74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3547697== by 0x769D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547697== by 0x7636D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547697== by 0x630BD38: PetscInitialize (pinit.c:924) ==3547697== by 0x61DF717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3547697== by 0x61DF765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3547697== by 0x117ACD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3547697== by 0x113565: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3547697== by 0x115B4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3547697== by 0x1159EA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547697== by 0x116081: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547697== by 0x111895: main (TestImmersedBoundaryElement.cpp:19) ==3547697== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* obj:* obj:* obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2 fun:hwloc_topology_load fun:opal_hwloc_base_get_topology fun:orte_ess_base_proc_binding obj:* fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547697== LEAK SUMMARY: ==3547697== definitely lost: 1,408 bytes in 12 blocks ==3547697== indirectly lost: 1,760 bytes in 16 blocks ==3547697== possibly lost: 0 bytes in 0 blocks ==3547697== still reachable: 7,355 bytes in 110 blocks ==3547697== suppressed: 696,668 bytes in 9,353 blocks ==3547697== Reachable blocks (those to which a pointer was found) are not shown. ==3547697== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3547697== ==3547697== Use --track-origins=yes to see where uninitialised values come from ==3547697== For lists of detected and suppressed errors, rerun with: -s ==3547697== ERROR SUMMARY: 8 errors from 8 contexts (suppressed: 29 from 29)