==3547704== Memcheck, a memory error detector ==3547704== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==3547704== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==3547704== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryFftInterface -malloc_debug -malloc_dump -memory_info ==3547704== Parent PID: 3546972 ==3547704== ==3547704== WARNING: pwritev(vector[...]) is an obsolete suppression line not supported in valgrind 3.15 or later. ==3547704== You should replace [...] by a specific index such as [0] or [1] or [2] or similar ==3547704== ==3547704== Syscall param socketcall.getsockopt(optlen) points to uninitialised byte(s) ==3547704== at 0x7DA379E: getsockopt_syscall (getsockopt.c:29) ==3547704== by 0x7DA379E: getsockopt (getsockopt.c:94) ==3547704== by 0x10739157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547704== by 0x10740A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547704== by 0x10747DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547704== by 0x106473C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547704== by 0x105C0E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==3547704== by 0xFD7FE6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==3547704== by 0xB6B64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3547704== by 0x769D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547704== by 0x7636D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547704== by 0x630BD38: PetscInitialize (pinit.c:924) ==3547704== by 0x61DF717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3547704== by 0x61DF765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3547704== by 0x126BEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3547704== by 0x1210DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3547704== by 0x123740: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3547704== by 0x12363C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547704== by 0x123C4F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547704== by 0x11F8E0: main (TestImmersedBoundaryFftInterface.cpp:18) ==3547704== Address 0x1ffeffdf9c is on thread 1's stack ==3547704== in frame #2, created by pmix_ptl_base_make_connection (???:) ==3547704== { Memcheck:Param socketcall.getsockopt(optlen) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547704== Syscall param socketcall.getsockopt(optlen_out) points to uninitialised byte(s) ==3547704== at 0x7DA379E: getsockopt_syscall (getsockopt.c:29) ==3547704== by 0x7DA379E: getsockopt (getsockopt.c:94) ==3547704== by 0x10739157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547704== by 0x10740A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547704== by 0x10747DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547704== by 0x106473C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547704== by 0x105C0E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==3547704== by 0xFD7FE6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==3547704== by 0xB6B64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3547704== by 0x769D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547704== by 0x7636D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547704== by 0x630BD38: PetscInitialize (pinit.c:924) ==3547704== by 0x61DF717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3547704== by 0x61DF765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3547704== by 0x126BEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3547704== by 0x1210DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3547704== by 0x123740: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3547704== by 0x12363C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547704== by 0x123C4F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547704== by 0x11F8E0: main (TestImmersedBoundaryFftInterface.cpp:18) ==3547704== Address 0x1ffeffdf9c is on thread 1's stack ==3547704== in frame #2, created by pmix_ptl_base_make_connection (???:) ==3547704== { Memcheck:Param socketcall.getsockopt(optlen_out) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547704== Syscall param setsockopt(optlen) contains uninitialised byte(s) ==3547704== at 0x7DA3C7E: setsockopt_syscall (setsockopt.c:29) ==3547704== by 0x7DA3C7E: setsockopt (setsockopt.c:95) ==3547704== by 0x10740BA9: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547704== by 0x10747DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547704== by 0x106473C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547704== by 0x105C0E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==3547704== by 0xFD7FE6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==3547704== by 0xB6B64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3547704== by 0x769D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547704== by 0x7636D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547704== by 0x630BD38: PetscInitialize (pinit.c:924) ==3547704== by 0x61DF717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3547704== by 0x61DF765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3547704== by 0x126BEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3547704== by 0x1210DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3547704== by 0x123740: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3547704== by 0x12363C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547704== by 0x123C4F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547704== by 0x11F8E0: main (TestImmersedBoundaryFftInterface.cpp:18) ==3547704== { Memcheck:Param setsockopt(optlen) fun:setsockopt_syscall fun:setsockopt fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547704== ==3547704== FILE DESCRIPTORS: 9 open (3 std) at exit. ==3547704== Open file descriptor 12: ==3547704== at 0x7D9122D: pipe (pipe.c:29) ==3547704== by 0xFD8007D: ??? ==3547704== by 0xB6B64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3547704== by 0x769D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547704== by 0x7636D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547704== by 0x630BD38: PetscInitialize (pinit.c:924) ==3547704== by 0x61DF717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3547704== by 0x61DF765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3547704== by 0x126BEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3547704== by 0x1210DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3547704== by 0x123740: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3547704== by 0x12363C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547704== by 0x123C4F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547704== by 0x11F8E0: main (TestImmersedBoundaryFftInterface.cpp:18) ==3547704== ==3547704== Open file descriptor 8: /dev/shm/open_mpi.0000 ==3547704== at 0x7D95BCC: __open_nocancel (open64_nocancel.c:39) ==3547704== by 0x7D19C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==3547704== by 0x7595822: ??? ==3547704== by 0x759596F: ??? ==3547704== by 0xB75D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3547704== by 0xB75D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3547704== by 0xB713922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3547704== by 0xB6B62DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3547704== by 0x769D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547704== by 0x7636D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547704== by 0x630BD38: PetscInitialize (pinit.c:924) ==3547704== by 0x61DF717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3547704== by 0x61DF765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3547704== by 0x126BEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3547704== by 0x1210DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3547704== by 0x123740: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3547704== by 0x12363C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547704== by 0x123C4F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547704== by 0x11F8E0: main (TestImmersedBoundaryFftInterface.cpp:18) ==3547704== ==3547704== Open file descriptor 117: ==3547704== ==3547704== ==3547704== Open file descriptor 110: ==3547704== ==3547704== ==3547704== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryFftInterface_valgrind.txt ==3547704== ==3547704== ==3547704== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==3547704== ==3547704== ==3547704== ==3547704== HEAP SUMMARY: ==3547704== in use at exit: 1,501,559 bytes in 9,600 blocks ==3547704== total heap usage: 50,792 allocs, 41,192 frees, 1,361,938,088 bytes allocated ==3547704== ==3547704== 448 bytes in 8 blocks are definitely lost in loss record 111 of 142 ==3547704== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==3547704== by 0x55347D5: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==3547704== by 0x5532A6E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==3547704== by 0x5535A14: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==3547704== by 0x5535A39: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==3547704== by 0x400647D: call_init.part.0 (dl-init.c:70) ==3547704== by 0x4006567: call_init (dl-init.c:33) ==3547704== by 0x4006567: _dl_init (dl-init.c:117) ==3547704== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==3547704== by 0x3: ??? ==3547704== by 0x1FFF00030A: ??? ==3547704== by 0x1FFF00037D: ??? ==3547704== by 0x1FFF00038B: ??? ==3547704== by 0x1FFF000398: ??? ==3547704== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==3547704== 552 bytes in 1 blocks are definitely lost in loss record 113 of 142 ==3547704== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==3547704== by 0x1064EC13: ??? ==3547704== by 0x1064F22C: ??? ==3547704== by 0x105C24B7: ??? ==3547704== by 0x760315A: ompi_proc_complete_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547704== by 0x769DA97: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547704== by 0x7636D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547704== by 0x630BD38: PetscInitialize (pinit.c:924) ==3547704== by 0x61DF717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3547704== by 0x61DF765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3547704== by 0x126BEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3547704== by 0x1210DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3547704== by 0x123740: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3547704== by 0x12363C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547704== by 0x123C4F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547704== by 0x11F8E0: main (TestImmersedBoundaryFftInterface.cpp:18) ==3547704== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* fun:ompi_proc_complete_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547704== 2,736 (752 direct, 1,984 indirect) bytes in 1 blocks are definitely lost in loss record 133 of 142 ==3547704== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==3547704== by 0x1278D2: TestImmersedBoundaryFftInterface::TestFftExecuteForward() (TestImmersedBoundaryFftInterface.hpp:95) ==3547704== by 0x128766: TestDescription_TestImmersedBoundaryFftInterface_TestFftExecuteForward::runTest() (TestImmersedBoundaryFftInterface.cpp:36) ==3547704== by 0x120914: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==3547704== by 0x1239EE: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==3547704== by 0x1238D3: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==3547704== by 0x123779: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==3547704== by 0x12363C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547704== by 0x123C4F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547704== by 0x11F8E0: main (TestImmersedBoundaryFftInterface.cpp:18) ==3547704== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN32TestImmersedBoundaryFftInterface21TestFftExecuteForwardEv fun:_ZN70TestDescription_TestImmersedBoundaryFftInterface_TestFftExecuteForward7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547704== 262,144 bytes in 1 blocks are possibly lost in loss record 136 of 142 ==3547704== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==3547704== by 0x12DE3B: __gnu_cxx::new_allocator::allocate(unsigned long, void const*) (new_allocator.h:127) ==3547704== by 0x58780AB: boost::multi_array >::allocate_space() (multi_array.hpp:545) ==3547704== by 0x5878AE6: boost::multi_array >::multi_array(boost::detail::multi_array::extent_gen<3ul> const&, boost::general_storage_order<3ul> const&, std::allocator const&) (multi_array.hpp:226) ==3547704== by 0x5876C59: boost::multi_array >::resize(boost::detail::multi_array::extent_gen<3ul> const&) (multi_array.hpp:458) ==3547704== by 0x58FF639: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, std::vector*, std::allocator*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:65) ==3547704== by 0x1278F2: TestImmersedBoundaryFftInterface::TestFftExecuteForward() (TestImmersedBoundaryFftInterface.hpp:95) ==3547704== by 0x128766: TestDescription_TestImmersedBoundaryFftInterface_TestFftExecuteForward::runTest() (TestImmersedBoundaryFftInterface.cpp:36) ==3547704== by 0x120914: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==3547704== by 0x1239EE: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==3547704== by 0x1238D3: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==3547704== by 0x123779: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==3547704== by 0x12363C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547704== by 0x123C4F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547704== by 0x11F8E0: main (TestImmersedBoundaryFftInterface.cpp:18) ==3547704== { Memcheck:Leak match-leak-kinds: possible fun:_Znwm fun:_ZN9__gnu_cxx13new_allocatorIdE8allocateEmPKv fun:_ZN5boost11multi_arrayIdLm3ESaIdEE14allocate_spaceEv fun:_ZN5boost11multi_arrayIdLm3ESaIdEEC1ERKNS_6detail11multi_array10extent_genILm3EEERKNS_21general_storage_orderILm3EEERKS1_ fun:_ZN5boost11multi_arrayIdLm3ESaIdEE6resizeERKNS_6detail11multi_array10extent_genILm3EEE fun:_ZN20ImmersedBoundaryMeshILj2ELj2EEC1ESt6vectorIP4NodeILj2EESaIS4_EES1_IP23ImmersedBoundaryElementILj2ELj2EESaIS9_EES1_IPS7_ILj1ELj2EESaISD_EEjj fun:_ZN32TestImmersedBoundaryFftInterface21TestFftExecuteForwardEv fun:_ZN70TestDescription_TestImmersedBoundaryFftInterface_TestFftExecuteForward7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547704== 264,880 (752 direct, 264,128 indirect) bytes in 1 blocks are definitely lost in loss record 139 of 142 ==3547704== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==3547704== by 0x1270DD: TestImmersedBoundaryFftInterface::TestConstructor() (TestImmersedBoundaryFftInterface.hpp:69) ==3547704== by 0x1286FC: TestDescription_TestImmersedBoundaryFftInterface_TestConstructor::runTest() (TestImmersedBoundaryFftInterface.cpp:30) ==3547704== by 0x120914: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==3547704== by 0x1239EE: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==3547704== by 0x1238D3: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==3547704== by 0x123779: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==3547704== by 0x12363C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547704== by 0x123C4F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547704== by 0x11F8E0: main (TestImmersedBoundaryFftInterface.cpp:18) ==3547704== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN32TestImmersedBoundaryFftInterface15TestConstructorEv fun:_ZN64TestDescription_TestImmersedBoundaryFftInterface_TestConstructor7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547704== 264,880 (752 direct, 264,128 indirect) bytes in 1 blocks are definitely lost in loss record 140 of 142 ==3547704== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==3547704== by 0x128094: TestImmersedBoundaryFftInterface::TestFftExecuteInverse() (TestImmersedBoundaryFftInterface.hpp:126) ==3547704== by 0x1287D0: TestDescription_TestImmersedBoundaryFftInterface_TestFftExecuteInverse::runTest() (TestImmersedBoundaryFftInterface.cpp:42) ==3547704== by 0x120914: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==3547704== by 0x1239EE: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==3547704== by 0x1238D3: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==3547704== by 0x123779: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==3547704== by 0x12363C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547704== by 0x123C4F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547704== by 0x11F8E0: main (TestImmersedBoundaryFftInterface.cpp:18) ==3547704== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN32TestImmersedBoundaryFftInterface21TestFftExecuteInverseEv fun:_ZN70TestDescription_TestImmersedBoundaryFftInterface_TestFftExecuteInverse7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547704== 685,296 (136 direct, 685,160 indirect) bytes in 1 blocks are definitely lost in loss record 142 of 142 ==3547704== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==3547704== by 0x117C174E: ??? ==3547704== by 0x117C1E0B: ??? ==3547704== by 0x117C4F56: ??? ==3547704== by 0x117BA65D: ??? ==3547704== by 0x117BAFA3: ??? ==3547704== by 0xB7C9F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==3547704== by 0xB7A5AE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==3547704== by 0xB756CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3547704== by 0xB681EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3547704== by 0xFD80F03: ??? ==3547704== by 0xB6B64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3547704== by 0x769D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547704== by 0x7636D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547704== by 0x630BD38: PetscInitialize (pinit.c:924) ==3547704== by 0x61DF717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3547704== by 0x61DF765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3547704== by 0x126BEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3547704== by 0x1210DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3547704== by 0x123740: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3547704== by 0x12363C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547704== by 0x123C4F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547704== by 0x11F8E0: main (TestImmersedBoundaryFftInterface.cpp:18) ==3547704== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* obj:* obj:* obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2 fun:hwloc_topology_load fun:opal_hwloc_base_get_topology fun:orte_ess_base_proc_binding obj:* fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547704== LEAK SUMMARY: ==3547704== definitely lost: 3,392 bytes in 13 blocks ==3547704== indirectly lost: 532,000 bytes in 123 blocks ==3547704== possibly lost: 262,144 bytes in 1 blocks ==3547704== still reachable: 7,355 bytes in 110 blocks ==3547704== suppressed: 696,668 bytes in 9,353 blocks ==3547704== Reachable blocks (those to which a pointer was found) are not shown. ==3547704== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3547704== ==3547704== Use --track-origins=yes to see where uninitialised values come from ==3547704== For lists of detected and suppressed errors, rerun with: -s ==3547704== ERROR SUMMARY: 10 errors from 10 contexts (suppressed: 29 from 29)