==3547720== Memcheck, a memory error detector ==3547720== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==3547720== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==3547720== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryMesh -malloc_debug -malloc_dump -memory_info ==3547720== Parent PID: 3546972 ==3547720== ==3547720== WARNING: pwritev(vector[...]) is an obsolete suppression line not supported in valgrind 3.15 or later. ==3547720== You should replace [...] by a specific index such as [0] or [1] or [2] or similar ==3547720== ==3547720== Syscall param socketcall.getsockopt(optlen) points to uninitialised byte(s) ==3547720== at 0x7F6D79E: getsockopt_syscall (getsockopt.c:29) ==3547720== by 0x7F6D79E: getsockopt (getsockopt.c:94) ==3547720== by 0x10739157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547720== by 0x10740A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547720== by 0x10747DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547720== by 0x106473C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547720== by 0x105C0E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==3547720== by 0xFD7FE6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==3547720== by 0xB6B64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3547720== by 0x777E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547720== by 0x7717D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547720== by 0x640ED38: PetscInitialize (pinit.c:924) ==3547720== by 0x627E717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3547720== by 0x627E765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3547720== by 0x16DC35: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3547720== by 0x166D73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3547720== by 0x16A042: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3547720== by 0x169EE3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547720== by 0x16A579: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547720== by 0x165060: main (TestImmersedBoundaryMesh.cpp:19) ==3547720== Address 0x1ffeffdf9c is on thread 1's stack ==3547720== in frame #2, created by pmix_ptl_base_make_connection (???:) ==3547720== { Memcheck:Param socketcall.getsockopt(optlen) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547720== Syscall param socketcall.getsockopt(optlen_out) points to uninitialised byte(s) ==3547720== at 0x7F6D79E: getsockopt_syscall (getsockopt.c:29) ==3547720== by 0x7F6D79E: getsockopt (getsockopt.c:94) ==3547720== by 0x10739157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547720== by 0x10740A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547720== by 0x10747DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547720== by 0x106473C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547720== by 0x105C0E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==3547720== by 0xFD7FE6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==3547720== by 0xB6B64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3547720== by 0x777E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547720== by 0x7717D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547720== by 0x640ED38: PetscInitialize (pinit.c:924) ==3547720== by 0x627E717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3547720== by 0x627E765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3547720== by 0x16DC35: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3547720== by 0x166D73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3547720== by 0x16A042: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3547720== by 0x169EE3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547720== by 0x16A579: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547720== by 0x165060: main (TestImmersedBoundaryMesh.cpp:19) ==3547720== Address 0x1ffeffdf9c is on thread 1's stack ==3547720== in frame #2, created by pmix_ptl_base_make_connection (???:) ==3547720== { Memcheck:Param socketcall.getsockopt(optlen_out) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547720== Syscall param setsockopt(optlen) contains uninitialised byte(s) ==3547720== at 0x7F6DC7E: setsockopt_syscall (setsockopt.c:29) ==3547720== by 0x7F6DC7E: setsockopt (setsockopt.c:95) ==3547720== by 0x10740BA9: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547720== by 0x10747DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547720== by 0x106473C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==3547720== by 0x105C0E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==3547720== by 0xFD7FE6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==3547720== by 0xB6B64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3547720== by 0x777E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547720== by 0x7717D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547720== by 0x640ED38: PetscInitialize (pinit.c:924) ==3547720== by 0x627E717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3547720== by 0x627E765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3547720== by 0x16DC35: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3547720== by 0x166D73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3547720== by 0x16A042: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3547720== by 0x169EE3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547720== by 0x16A579: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547720== by 0x165060: main (TestImmersedBoundaryMesh.cpp:19) ==3547720== { Memcheck:Param setsockopt(optlen) fun:setsockopt_syscall fun:setsockopt fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547720== ==3547720== FILE DESCRIPTORS: 9 open (3 std) at exit. ==3547720== Open file descriptor 12: ==3547720== at 0x7F5B22D: pipe (pipe.c:29) ==3547720== by 0xFD8007D: ??? ==3547720== by 0xB6B64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3547720== by 0x777E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547720== by 0x7717D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547720== by 0x640ED38: PetscInitialize (pinit.c:924) ==3547720== by 0x627E717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3547720== by 0x627E765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3547720== by 0x16DC35: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3547720== by 0x166D73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3547720== by 0x16A042: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3547720== by 0x169EE3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547720== by 0x16A579: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547720== by 0x165060: main (TestImmersedBoundaryMesh.cpp:19) ==3547720== ==3547720== Open file descriptor 8: /dev/shm/open_mpi.0000 ==3547720== at 0x7F5FBCC: __open_nocancel (open64_nocancel.c:39) ==3547720== by 0x7EE3C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==3547720== by 0x62B6822: ??? ==3547720== by 0x62B696F: ??? ==3547720== by 0xB75D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3547720== by 0xB75D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3547720== by 0xB713922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3547720== by 0xB6B62DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3547720== by 0x777E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547720== by 0x7717D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547720== by 0x640ED38: PetscInitialize (pinit.c:924) ==3547720== by 0x627E717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3547720== by 0x627E765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3547720== by 0x16DC35: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3547720== by 0x166D73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3547720== by 0x16A042: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3547720== by 0x169EE3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547720== by 0x16A579: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547720== by 0x165060: main (TestImmersedBoundaryMesh.cpp:19) ==3547720== ==3547720== Open file descriptor 117: ==3547720== ==3547720== ==3547720== Open file descriptor 110: ==3547720== ==3547720== ==3547720== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryMesh_valgrind.txt ==3547720== ==3547720== ==3547720== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==3547720== ==3547720== ==3547720== ==3547720== HEAP SUMMARY: ==3547720== in use at exit: 1,239,887 bytes in 9,557 blocks ==3547720== total heap usage: 104,690 allocs, 95,133 frees, 1,386,779,847 bytes allocated ==3547720== ==3547720== 368 (80 direct, 288 indirect) bytes in 2 blocks are definitely lost in loss record 59 of 108 ==3547720== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==3547720== by 0x1A78BB: __gnu_cxx::new_allocator >::allocate(unsigned long, void const*) (new_allocator.h:127) ==3547720== by 0x1A6E0E: std::allocator_traits > >::allocate(std::allocator >&, unsigned long) (alloc_traits.h:464) ==3547720== by 0x1A664A: std::_Rb_tree, std::less, std::allocator >::_M_get_node() (stl_tree.h:561) ==3547720== by 0x1A569D: std::_Rb_tree_node* std::_Rb_tree, std::less, std::allocator >::_M_create_node(unsigned int const&) (stl_tree.h:611) ==3547720== by 0x1A3D1C: std::_Rb_tree_node* std::_Rb_tree, std::less, std::allocator >::_Alloc_node::operator()(unsigned int const&) const (stl_tree.h:529) ==3547720== by 0x1A1EEB: std::_Rb_tree_iterator std::_Rb_tree, std::less, std::allocator >::_M_insert_, std::less, std::allocator >::_Alloc_node>(std::_Rb_tree_node_base*, std::_Rb_tree_node_base*, unsigned int const&, std::_Rb_tree, std::less, std::allocator >::_Alloc_node&) (stl_tree.h:1784) ==3547720== by 0x567917D: std::pair, bool> std::_Rb_tree, std::less, std::allocator >::_M_insert_unique(unsigned int const&) (stl_tree.h:2129) ==3547720== by 0x567480F: std::set, std::allocator >::insert(unsigned int const&) (stl_set.h:512) ==3547720== by 0x57E16EB: Node<2u>::AddElement(unsigned int) (Node.cpp:270) ==3547720== by 0x170082: TestImmersedBoundaryMesh::TestImmersedBoundaryElementAndLaminaIterators() (TestImmersedBoundaryMesh.hpp:178) ==3547720== by 0x193AF4: TestDescription_TestImmersedBoundaryMesh_TestImmersedBoundaryElementAndLaminaIterators::runTest() (TestImmersedBoundaryMesh.cpp:61) ==3547720== by 0x16636E: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==3547720== by 0x16A2F0: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==3547720== by 0x16A1D5: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==3547720== by 0x16A07B: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==3547720== by 0x169EE3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547720== by 0x16A579: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547720== by 0x165060: main (TestImmersedBoundaryMesh.cpp:19) ==3547720== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN9__gnu_cxx13new_allocatorISt13_Rb_tree_nodeIjEE8allocateEmPKv fun:_ZNSt16allocator_traitsISaISt13_Rb_tree_nodeIjEEE8allocateERS2_m fun:_ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE11_M_get_nodeEv fun:_ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE14_M_create_nodeIJRKjEEEPSt13_Rb_tree_nodeIjEDpOT_ fun:_ZNKSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE11_Alloc_nodeclIRKjEEPSt13_Rb_tree_nodeIjEOT_ fun:_ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE10_M_insert_IRKjNS5_11_Alloc_nodeEEESt17_Rb_tree_iteratorIjEPSt18_Rb_tree_node_baseSD_OT_RT0_ fun:_ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE16_M_insert_uniqueIRKjEESt4pairISt17_Rb_tree_iteratorIjEbEOT_ fun:_ZNSt3setIjSt4lessIjESaIjEE6insertERKj fun:_ZN4NodeILj2EE10AddElementEj fun:_ZN24TestImmersedBoundaryMesh45TestImmersedBoundaryElementAndLaminaIteratorsEv fun:_ZN86TestDescription_TestImmersedBoundaryMesh_TestImmersedBoundaryElementAndLaminaIterators7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547720== 448 bytes in 8 blocks are definitely lost in loss record 75 of 108 ==3547720== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==3547720== by 0x55347D5: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==3547720== by 0x5532A6E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==3547720== by 0x5535A14: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==3547720== by 0x5535A39: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==3547720== by 0x400647D: call_init.part.0 (dl-init.c:70) ==3547720== by 0x4006567: call_init (dl-init.c:33) ==3547720== by 0x4006567: _dl_init (dl-init.c:117) ==3547720== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==3547720== by 0x3: ??? ==3547720== by 0x1FFF00031A: ??? ==3547720== by 0x1FFF000385: ??? ==3547720== by 0x1FFF000393: ??? ==3547720== by 0x1FFF0003A0: ??? ==3547720== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==3547720== 512 (432 direct, 80 indirect) bytes in 3 blocks are definitely lost in loss record 76 of 108 ==3547720== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==3547720== by 0x16FF5E: TestImmersedBoundaryMesh::TestImmersedBoundaryElementAndLaminaIterators() (TestImmersedBoundaryMesh.hpp:175) ==3547720== by 0x193AF4: TestDescription_TestImmersedBoundaryMesh_TestImmersedBoundaryElementAndLaminaIterators::runTest() (TestImmersedBoundaryMesh.cpp:61) ==3547720== by 0x16636E: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==3547720== by 0x16A2F0: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==3547720== by 0x16A1D5: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==3547720== by 0x16A07B: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==3547720== by 0x169EE3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547720== by 0x16A579: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547720== by 0x165060: main (TestImmersedBoundaryMesh.cpp:19) ==3547720== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN24TestImmersedBoundaryMesh45TestImmersedBoundaryElementAndLaminaIteratorsEv fun:_ZN86TestDescription_TestImmersedBoundaryMesh_TestImmersedBoundaryElementAndLaminaIterators7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547720== 552 bytes in 1 blocks are definitely lost in loss record 78 of 108 ==3547720== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==3547720== by 0x1064EC13: ??? ==3547720== by 0x1064F22C: ??? ==3547720== by 0x105C24B7: ??? ==3547720== by 0x76E415A: ompi_proc_complete_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547720== by 0x777EA97: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547720== by 0x7717D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547720== by 0x640ED38: PetscInitialize (pinit.c:924) ==3547720== by 0x627E717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3547720== by 0x627E765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3547720== by 0x16DC35: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3547720== by 0x166D73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3547720== by 0x16A042: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3547720== by 0x169EE3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547720== by 0x16A579: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547720== by 0x165060: main (TestImmersedBoundaryMesh.cpp:19) ==3547720== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* fun:ompi_proc_complete_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547720== 880 (720 direct, 160 indirect) bytes in 5 blocks are definitely lost in loss record 93 of 108 ==3547720== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==3547720== by 0x16FEF8: TestImmersedBoundaryMesh::TestImmersedBoundaryElementAndLaminaIterators() (TestImmersedBoundaryMesh.hpp:174) ==3547720== by 0x193AF4: TestDescription_TestImmersedBoundaryMesh_TestImmersedBoundaryElementAndLaminaIterators::runTest() (TestImmersedBoundaryMesh.cpp:61) ==3547720== by 0x16636E: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==3547720== by 0x16A2F0: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==3547720== by 0x16A1D5: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==3547720== by 0x16A07B: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==3547720== by 0x169EE3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547720== by 0x16A579: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547720== by 0x165060: main (TestImmersedBoundaryMesh.cpp:19) ==3547720== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN24TestImmersedBoundaryMesh45TestImmersedBoundaryElementAndLaminaIteratorsEv fun:_ZN86TestDescription_TestImmersedBoundaryMesh_TestImmersedBoundaryElementAndLaminaIterators7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547720== 880 (720 direct, 160 indirect) bytes in 5 blocks are definitely lost in loss record 94 of 108 ==3547720== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==3547720== by 0x16FFC4: TestImmersedBoundaryMesh::TestImmersedBoundaryElementAndLaminaIterators() (TestImmersedBoundaryMesh.hpp:176) ==3547720== by 0x193AF4: TestDescription_TestImmersedBoundaryMesh_TestImmersedBoundaryElementAndLaminaIterators::runTest() (TestImmersedBoundaryMesh.cpp:61) ==3547720== by 0x16636E: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==3547720== by 0x16A2F0: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==3547720== by 0x16A1D5: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==3547720== by 0x16A07B: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==3547720== by 0x169EE3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547720== by 0x16A579: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547720== by 0x165060: main (TestImmersedBoundaryMesh.cpp:19) ==3547720== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN24TestImmersedBoundaryMesh45TestImmersedBoundaryElementAndLaminaIteratorsEv fun:_ZN86TestDescription_TestImmersedBoundaryMesh_TestImmersedBoundaryElementAndLaminaIterators7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547720== 262,896 (752 direct, 262,144 indirect) bytes in 1 blocks are definitely lost in loss record 105 of 108 ==3547720== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==3547720== by 0x16E75D: TestImmersedBoundaryMesh::TestSetupFluidVelocityGrids() (TestImmersedBoundaryMesh.hpp:86) ==3547720== by 0x19394C: TestDescription_TestImmersedBoundaryMesh_TestSetupFluidVelocityGrids::runTest() (TestImmersedBoundaryMesh.cpp:37) ==3547720== by 0x16636E: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==3547720== by 0x16A2F0: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==3547720== by 0x16A1D5: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==3547720== by 0x16A07B: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==3547720== by 0x169EE3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547720== by 0x16A579: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547720== by 0x165060: main (TestImmersedBoundaryMesh.cpp:19) ==3547720== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN24TestImmersedBoundaryMesh27TestSetupFluidVelocityGridsEv fun:_ZN68TestDescription_TestImmersedBoundaryMesh_TestSetupFluidVelocityGrids7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547720== 264,880 (752 direct, 264,128 indirect) bytes in 1 blocks are definitely lost in loss record 106 of 108 ==3547720== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==3547720== by 0x16E0E1: TestImmersedBoundaryMesh::TestSolveNodeAndElementMapping() (TestImmersedBoundaryMesh.hpp:75) ==3547720== by 0x1938E2: TestDescription_TestImmersedBoundaryMesh_TestSolveNodeAndElementMapping::runTest() (TestImmersedBoundaryMesh.cpp:31) ==3547720== by 0x16636E: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==3547720== by 0x16A2F0: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==3547720== by 0x16A1D5: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==3547720== by 0x16A07B: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==3547720== by 0x169EE3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547720== by 0x16A579: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547720== by 0x165060: main (TestImmersedBoundaryMesh.cpp:19) ==3547720== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN24TestImmersedBoundaryMesh30TestSolveNodeAndElementMappingEv fun:_ZN71TestDescription_TestImmersedBoundaryMesh_TestSolveNodeAndElementMapping7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547720== 685,281 (136 direct, 685,145 indirect) bytes in 1 blocks are definitely lost in loss record 108 of 108 ==3547720== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==3547720== by 0x117C174E: ??? ==3547720== by 0x117C1E0B: ??? ==3547720== by 0x117C4F56: ??? ==3547720== by 0x117BA65D: ??? ==3547720== by 0x117BAFA3: ??? ==3547720== by 0xB7C9F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==3547720== by 0xB7A5AE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==3547720== by 0xB756CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3547720== by 0xB681EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3547720== by 0xFD80F03: ??? ==3547720== by 0xB6B64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3547720== by 0x777E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547720== by 0x7717D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3547720== by 0x640ED38: PetscInitialize (pinit.c:924) ==3547720== by 0x627E717: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3547720== by 0x627E765: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3547720== by 0x16DC35: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3547720== by 0x166D73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3547720== by 0x16A042: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3547720== by 0x169EE3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3547720== by 0x16A579: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3547720== by 0x165060: main (TestImmersedBoundaryMesh.cpp:19) ==3547720== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* obj:* obj:* obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2 fun:hwloc_topology_load fun:opal_hwloc_base_get_topology fun:orte_ess_base_proc_binding obj:* fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==3547720== LEAK SUMMARY: ==3547720== definitely lost: 4,592 bytes in 27 blocks ==3547720== indirectly lost: 528,720 bytes in 66 blocks ==3547720== possibly lost: 0 bytes in 0 blocks ==3547720== still reachable: 9,907 bytes in 111 blocks ==3547720== suppressed: 696,668 bytes in 9,353 blocks ==3547720== Reachable blocks (those to which a pointer was found) are not shown. ==3547720== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3547720== ==3547720== Use --track-origins=yes to see where uninitialised values come from ==3547720== For lists of detected and suppressed errors, rerun with: -s ==3547720== ERROR SUMMARY: 12 errors from 12 contexts (suppressed: 29 from 29)