==4081479== Memcheck, a memory error detector ==4081479== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==4081479== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==4081479== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==4081479== Parent PID: 4079680 ==4081479== ==4081479== WARNING: pwritev(vector[...]) is an obsolete suppression line not supported in valgrind 3.15 or later. ==4081479== You should replace [...] by a specific index such as [0] or [1] or [2] or similar ==4081479== ==4081479== Syscall param socketcall.getsockopt(optlen) points to uninitialised byte(s) ==4081479== at 0xFF0579E: getsockopt_syscall (getsockopt.c:29) ==4081479== by 0xFF0579E: getsockopt (getsockopt.c:94) ==4081479== by 0x192CA157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==4081479== by 0x192D1A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==4081479== by 0x192D8DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==4081479== by 0x191D83C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==4081479== by 0x19151E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==4081479== by 0x18910E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==4081479== by 0x13E774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==4081479== by 0xF7FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==4081479== by 0xF796D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==4081479== by 0xE48DD38: PetscInitialize (pinit.c:924) ==4081479== by 0xE2FF58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==4081479== by 0xE2FF5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==4081479== by 0x41307D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==4081479== by 0x4063D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==4081479== by 0x40C526: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==4081479== by 0x40C3C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==4081479== by 0x40CA5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==4081479== by 0x4046C0: main (TestVertexBasedCellPopulation.cpp:19) ==4081479== Address 0x1ffeffdf7c is on thread 1's stack ==4081479== in frame #2, created by pmix_ptl_base_make_connection (???:) ==4081479== { Memcheck:Param socketcall.getsockopt(optlen) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==4081479== Syscall param socketcall.getsockopt(optlen_out) points to uninitialised byte(s) ==4081479== at 0xFF0579E: getsockopt_syscall (getsockopt.c:29) ==4081479== by 0xFF0579E: getsockopt (getsockopt.c:94) ==4081479== by 0x192CA157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==4081479== by 0x192D1A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==4081479== by 0x192D8DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==4081479== by 0x191D83C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==4081479== by 0x19151E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==4081479== by 0x18910E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==4081479== by 0x13E774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==4081479== by 0xF7FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==4081479== by 0xF796D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==4081479== by 0xE48DD38: PetscInitialize (pinit.c:924) ==4081479== by 0xE2FF58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==4081479== by 0xE2FF5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==4081479== by 0x41307D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==4081479== by 0x4063D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==4081479== by 0x40C526: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==4081479== by 0x40C3C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==4081479== by 0x40CA5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==4081479== by 0x4046C0: main (TestVertexBasedCellPopulation.cpp:19) ==4081479== Address 0x1ffeffdf7c is on thread 1's stack ==4081479== in frame #2, created by pmix_ptl_base_make_connection (???:) ==4081479== { Memcheck:Param socketcall.getsockopt(optlen_out) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==4081479== Syscall param setsockopt(optlen) contains uninitialised byte(s) ==4081479== at 0xFF05C7E: setsockopt_syscall (setsockopt.c:29) ==4081479== by 0xFF05C7E: setsockopt (setsockopt.c:95) ==4081479== by 0x192D1BA9: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==4081479== by 0x192D8DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==4081479== by 0x191D83C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==4081479== by 0x19151E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==4081479== by 0x18910E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==4081479== by 0x13E774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==4081479== by 0xF7FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==4081479== by 0xF796D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==4081479== by 0xE48DD38: PetscInitialize (pinit.c:924) ==4081479== by 0xE2FF58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==4081479== by 0xE2FF5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==4081479== by 0x41307D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==4081479== by 0x4063D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==4081479== by 0x40C526: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==4081479== by 0x40C3C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==4081479== by 0x40CA5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==4081479== by 0x4046C0: main (TestVertexBasedCellPopulation.cpp:19) ==4081479== { Memcheck:Param setsockopt(optlen) fun:setsockopt_syscall fun:setsockopt fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==4081479== Use of uninitialised value of size 8 ==4081479== at 0xF99B81B: ??? (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==4081479== by 0xF99BF99: std::ostreambuf_iterator > std::num_put > >::_M_insert_int(std::ostreambuf_iterator >, std::ios_base&, char, unsigned long) const (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==4081479== by 0xF9AA399: std::ostream& std::ostream::_M_insert(unsigned long) (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==4081479== by 0x4DE586: void boost::archive::basic_text_oprimitive::save_impl(unsigned int const&, mpl_::bool_&) (basic_text_oprimitive.hpp:130) ==4081479== by 0x4D884D: void boost::archive::basic_text_oprimitive::save(unsigned int const&) (basic_text_oprimitive.hpp:180) ==4081479== by 0x4D443C: void boost::archive::text_oarchive_impl::save(unsigned int const&) (text_oarchive.hpp:65) ==4081479== by 0x4D08F2: void boost::archive::save_access::save_primitive(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:93) ==4081479== by 0x4CD206: void boost::archive::detail::save_non_pointer_type::save_primitive::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:237) ==4081479== by 0x4CA350: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:315) ==4081479== by 0x4C6B6A: void boost::archive::save(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:539) ==4081479== by 0x4C35E7: void boost::archive::detail::common_oarchive::save_override(unsigned int const&) (common_oarchive.hpp:71) ==4081479== by 0x4BFD38: void boost::archive::basic_text_oarchive::save_override(unsigned int const&) (basic_text_oarchive.hpp:83) ==4081479== by 0x4BDAC3: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (unsigned int const&) (interface_oarchive.hpp:70) ==4081479== by 0x4BBC4F: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(unsigned int const&) (interface_oarchive.hpp:77) ==4081479== by 0x9C595ED: void AbstractSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (AbstractSrnModel.hpp:83) ==4081479== by 0x9C58772: void boost::serialization::access::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (access.hpp:116) ==4081479== by 0x9C5748C: void boost::serialization::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:68) ==4081479== by 0x9C56682: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:118) ==4081479== by 0x9C55FAD: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==4081479== by 0x9C55A3D: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:258) ==4081479== by 0x9C55607: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:315) ==4081479== by 0x9C551D8: void boost::archive::save(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:539) ==4081479== by 0x9C54E77: void boost::archive::detail::common_oarchive::save_override(AbstractSrnModel const&) (common_oarchive.hpp:71) ==4081479== by 0x9C54B06: void boost::archive::basic_text_oarchive::save_override(AbstractSrnModel const&) (basic_text_oarchive.hpp:83) ==4081479== by 0x9C546E1: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (AbstractSrnModel const&) (interface_oarchive.hpp:70) ==4081479== by 0x9C5436B: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(AbstractSrnModel const&) (interface_oarchive.hpp:77) ==4081479== by 0x9D75156: void NullSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (NullSrnModel.hpp:67) ==4081479== by 0x9D74DAE: void boost::serialization::access::serialize(boost::archive::text_oarchive&, NullSrnModel&, unsigned int) (access.hpp:116) ==4081479== by 0x9D7473E: void boost::serialization::serialize(boost::archive::text_oarchive&, NullSrnModel&, unsigned int) (serialization.hpp:68) ==4081479== by 0x9D73F8E: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, NullSrnModel&, unsigned int) (serialization.hpp:118) ==4081479== by 0x9D73915: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==4081479== by 0x9D75ED5: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, NullSrnModel const&) (oserializer.hpp:258) ==4081479== by 0x9D75DBA: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, NullSrnModel const&) (oserializer.hpp:315) ==4081479== by 0x9D75BDE: void boost::archive::save(boost::archive::text_oarchive&, NullSrnModel const&) (oserializer.hpp:539) ==4081479== by 0x9D75A25: void boost::archive::detail::common_oarchive::save_override(NullSrnModel const&) (common_oarchive.hpp:71) ==4081479== by 0x9D75840: void boost::archive::basic_text_oarchive::save_override(NullSrnModel const&) (basic_text_oarchive.hpp:83) ==4081479== by 0x9D75735: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (NullSrnModel const&) (interface_oarchive.hpp:70) ==4081479== by 0x9D755B4: void boost::serialization::save(boost::archive::text_oarchive&, boost::serialization::nvp const&, unsigned int) (nvp.hpp:48) ==4081479== by 0x9D7546A: boost::serialization::free_saver >::invoke(boost::archive::text_oarchive&, boost::serialization::nvp const&, unsigned int) (split_free.hpp:45) ==4081479== by 0x9D7535C: void boost::serialization::split_free >(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (split_free.hpp:74) ==4081479== by 0x9D75186: void boost::serialization::serialize(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (nvp.hpp:65) ==4081479== by 0x9D74E0B: void boost::serialization::serialize_adl >(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (serialization.hpp:118) ==4081479== by 0x9D74778: void boost::archive::detail::save_non_pointer_type::save_only::invoke >(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:246) ==4081479== by 0x9D73FD1: void boost::archive::detail::save_non_pointer_type::invoke >(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:315) ==4081479== by 0x9D73957: void boost::archive::save const>(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:539) ==4081479== by 0x9D734FF: void boost::archive::detail::common_oarchive::save_override const>(boost::serialization::nvp const&) (common_oarchive.hpp:71) ==4081479== by 0x9D72F52: void boost::archive::basic_text_oarchive::save_override const>(boost::serialization::nvp const&) (basic_text_oarchive.hpp:83) ==4081479== by 0x9D728ED: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< >(boost::serialization::nvp const&) (interface_oarchive.hpp:70) ==4081479== by 0x9D72358: boost::archive::detail::pointer_oserializer::save_object_ptr(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:206) ==4081479== by 0xE36F389: ??? (in /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0) ==4081479== { Memcheck:Value8 obj:/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30 fun:_ZNKSt7num_putIcSt19ostreambuf_iteratorIcSt11char_traitsIcEEE13_M_insert_intImEES3_S3_RSt8ios_basecT_ fun:_ZNSo9_M_insertImEERSoT_ fun:_ZN5boost7archive21basic_text_oprimitiveISoE9save_implIjEEvRKT_RN4mpl_5bool_ILb0EEE fun:_ZN5boost7archive21basic_text_oprimitiveISoE4saveIjEEvRKT_ fun:_ZN5boost7archive18text_oarchive_implINS0_13text_oarchiveEE4saveIjEEvRKT_ fun:_ZN5boost7archive11save_access14save_primitiveINS0_13text_oarchiveEjEEvRT_RKT0_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE14save_primitive6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEKjEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsIjEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanIjEERS3_RKT_ fun:_ZN16AbstractSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE16AbstractSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK16AbstractSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI16AbstractSrnModelEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanI16AbstractSrnModelEERS3_RKT_ fun:_ZN12NullSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE12NullSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI12NullSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI12NullSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK12NullSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK12NullSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK12NullSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI12NullSrnModelEERS3_RKT_ fun:_ZN5boost13serialization4saveINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RKNS0_3nvpIT0_EEj fun:_ZN5boost13serialization10free_saverINS_7archive13text_oarchiveENS0_3nvpI12NullSrnModelEEE6invokeERS3_RKS6_j fun:_ZN5boost13serialization10split_freeINS_7archive13text_oarchiveENS0_3nvpI12NullSrnModelEEEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RNS0_3nvpIT0_EEj fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveENS0_3nvpI12NullSrnModelEEEEvRT_RT0_j fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE9save_only6invokeINS_13serialization3nvpI12NullSrnModelEEEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeINS_13serialization3nvpI12NullSrnModelEEEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEKNS_13serialization3nvpI12NullSrnModelEEEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIKNS_13serialization3nvpI12NullSrnModelEEEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIKNS_13serialization3nvpI12NullSrnModelEEEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsINS_13serialization3nvpI12NullSrnModelEEEERS3_RKT_ fun:_ZNK5boost7archive6detail19pointer_oserializerINS0_13text_oarchiveE12NullSrnModelE15save_object_ptrERNS1_14basic_oarchiveEPKv obj:/usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0 } ==4081479== Conditional jump or move depends on uninitialised value(s) ==4081479== at 0xF99B82D: ??? (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==4081479== by 0xF99BF99: std::ostreambuf_iterator > std::num_put > >::_M_insert_int(std::ostreambuf_iterator >, std::ios_base&, char, unsigned long) const (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==4081479== by 0xF9AA399: std::ostream& std::ostream::_M_insert(unsigned long) (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==4081479== by 0x4DE586: void boost::archive::basic_text_oprimitive::save_impl(unsigned int const&, mpl_::bool_&) (basic_text_oprimitive.hpp:130) ==4081479== by 0x4D884D: void boost::archive::basic_text_oprimitive::save(unsigned int const&) (basic_text_oprimitive.hpp:180) ==4081479== by 0x4D443C: void boost::archive::text_oarchive_impl::save(unsigned int const&) (text_oarchive.hpp:65) ==4081479== by 0x4D08F2: void boost::archive::save_access::save_primitive(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:93) ==4081479== by 0x4CD206: void boost::archive::detail::save_non_pointer_type::save_primitive::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:237) ==4081479== by 0x4CA350: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:315) ==4081479== by 0x4C6B6A: void boost::archive::save(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:539) ==4081479== by 0x4C35E7: void boost::archive::detail::common_oarchive::save_override(unsigned int const&) (common_oarchive.hpp:71) ==4081479== by 0x4BFD38: void boost::archive::basic_text_oarchive::save_override(unsigned int const&) (basic_text_oarchive.hpp:83) ==4081479== by 0x4BDAC3: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (unsigned int const&) (interface_oarchive.hpp:70) ==4081479== by 0x4BBC4F: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(unsigned int const&) (interface_oarchive.hpp:77) ==4081479== by 0x9C595ED: void AbstractSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (AbstractSrnModel.hpp:83) ==4081479== by 0x9C58772: void boost::serialization::access::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (access.hpp:116) ==4081479== by 0x9C5748C: void boost::serialization::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:68) ==4081479== by 0x9C56682: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:118) ==4081479== by 0x9C55FAD: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==4081479== by 0x9C55A3D: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:258) ==4081479== by 0x9C55607: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:315) ==4081479== by 0x9C551D8: void boost::archive::save(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:539) ==4081479== by 0x9C54E77: void boost::archive::detail::common_oarchive::save_override(AbstractSrnModel const&) (common_oarchive.hpp:71) ==4081479== by 0x9C54B06: void boost::archive::basic_text_oarchive::save_override(AbstractSrnModel const&) (basic_text_oarchive.hpp:83) ==4081479== by 0x9C546E1: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (AbstractSrnModel const&) (interface_oarchive.hpp:70) ==4081479== by 0x9C5436B: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(AbstractSrnModel const&) (interface_oarchive.hpp:77) ==4081479== by 0x9D75156: void NullSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (NullSrnModel.hpp:67) ==4081479== by 0x9D74DAE: void boost::serialization::access::serialize(boost::archive::text_oarchive&, NullSrnModel&, unsigned int) (access.hpp:116) ==4081479== by 0x9D7473E: void boost::serialization::serialize(boost::archive::text_oarchive&, NullSrnModel&, unsigned int) (serialization.hpp:68) ==4081479== by 0x9D73F8E: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, NullSrnModel&, unsigned int) (serialization.hpp:118) ==4081479== by 0x9D73915: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==4081479== by 0x9D75ED5: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, NullSrnModel const&) (oserializer.hpp:258) ==4081479== by 0x9D75DBA: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, NullSrnModel const&) (oserializer.hpp:315) ==4081479== by 0x9D75BDE: void boost::archive::save(boost::archive::text_oarchive&, NullSrnModel const&) (oserializer.hpp:539) ==4081479== by 0x9D75A25: void boost::archive::detail::common_oarchive::save_override(NullSrnModel const&) (common_oarchive.hpp:71) ==4081479== by 0x9D75840: void boost::archive::basic_text_oarchive::save_override(NullSrnModel const&) (basic_text_oarchive.hpp:83) ==4081479== by 0x9D75735: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (NullSrnModel const&) (interface_oarchive.hpp:70) ==4081479== by 0x9D755B4: void boost::serialization::save(boost::archive::text_oarchive&, boost::serialization::nvp const&, unsigned int) (nvp.hpp:48) ==4081479== by 0x9D7546A: boost::serialization::free_saver >::invoke(boost::archive::text_oarchive&, boost::serialization::nvp const&, unsigned int) (split_free.hpp:45) ==4081479== by 0x9D7535C: void boost::serialization::split_free >(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (split_free.hpp:74) ==4081479== by 0x9D75186: void boost::serialization::serialize(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (nvp.hpp:65) ==4081479== by 0x9D74E0B: void boost::serialization::serialize_adl >(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (serialization.hpp:118) ==4081479== by 0x9D74778: void boost::archive::detail::save_non_pointer_type::save_only::invoke >(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:246) ==4081479== by 0x9D73FD1: void boost::archive::detail::save_non_pointer_type::invoke >(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:315) ==4081479== by 0x9D73957: void boost::archive::save const>(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:539) ==4081479== by 0x9D734FF: void boost::archive::detail::common_oarchive::save_override const>(boost::serialization::nvp const&) (common_oarchive.hpp:71) ==4081479== by 0x9D72F52: void boost::archive::basic_text_oarchive::save_override const>(boost::serialization::nvp const&) (basic_text_oarchive.hpp:83) ==4081479== by 0x9D728ED: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< >(boost::serialization::nvp const&) (interface_oarchive.hpp:70) ==4081479== by 0x9D72358: boost::archive::detail::pointer_oserializer::save_object_ptr(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:206) ==4081479== by 0xE36F389: ??? (in /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0) ==4081479== { Memcheck:Cond obj:/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30 fun:_ZNKSt7num_putIcSt19ostreambuf_iteratorIcSt11char_traitsIcEEE13_M_insert_intImEES3_S3_RSt8ios_basecT_ fun:_ZNSo9_M_insertImEERSoT_ fun:_ZN5boost7archive21basic_text_oprimitiveISoE9save_implIjEEvRKT_RN4mpl_5bool_ILb0EEE fun:_ZN5boost7archive21basic_text_oprimitiveISoE4saveIjEEvRKT_ fun:_ZN5boost7archive18text_oarchive_implINS0_13text_oarchiveEE4saveIjEEvRKT_ fun:_ZN5boost7archive11save_access14save_primitiveINS0_13text_oarchiveEjEEvRT_RKT0_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE14save_primitive6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEKjEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsIjEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanIjEERS3_RKT_ fun:_ZN16AbstractSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE16AbstractSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK16AbstractSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI16AbstractSrnModelEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanI16AbstractSrnModelEERS3_RKT_ fun:_ZN12NullSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE12NullSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI12NullSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI12NullSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK12NullSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK12NullSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK12NullSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI12NullSrnModelEERS3_RKT_ fun:_ZN5boost13serialization4saveINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RKNS0_3nvpIT0_EEj fun:_ZN5boost13serialization10free_saverINS_7archive13text_oarchiveENS0_3nvpI12NullSrnModelEEE6invokeERS3_RKS6_j fun:_ZN5boost13serialization10split_freeINS_7archive13text_oarchiveENS0_3nvpI12NullSrnModelEEEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE12NullSrnModelEEvRT_RNS0_3nvpIT0_EEj fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveENS0_3nvpI12NullSrnModelEEEEvRT_RT0_j fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE9save_only6invokeINS_13serialization3nvpI12NullSrnModelEEEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeINS_13serialization3nvpI12NullSrnModelEEEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEKNS_13serialization3nvpI12NullSrnModelEEEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIKNS_13serialization3nvpI12NullSrnModelEEEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIKNS_13serialization3nvpI12NullSrnModelEEEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsINS_13serialization3nvpI12NullSrnModelEEEERS3_RKT_ fun:_ZNK5boost7archive6detail19pointer_oserializerINS0_13text_oarchiveE12NullSrnModelE15save_object_ptrERNS1_14basic_oarchiveEPKv obj:/usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0 } ==4081479== ==4081479== FILE DESCRIPTORS: 9 open (3 std) at exit. ==4081479== Open file descriptor 12: ==4081479== at 0xFEF322D: pipe (pipe.c:29) ==4081479== by 0x1891107D: ??? ==4081479== by 0x13E774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==4081479== by 0xF7FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==4081479== by 0xF796D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==4081479== by 0xE48DD38: PetscInitialize (pinit.c:924) ==4081479== by 0xE2FF58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==4081479== by 0xE2FF5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==4081479== by 0x41307D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==4081479== by 0x4063D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==4081479== by 0x40C526: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==4081479== by 0x40C3C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==4081479== by 0x40CA5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==4081479== by 0x4046C0: main (TestVertexBasedCellPopulation.cpp:19) ==4081479== ==4081479== Open file descriptor 8: /dev/shm/open_mpi.0000 ==4081479== at 0xFEF7BCC: __open_nocancel (open64_nocancel.c:39) ==4081479== by 0xFE7BC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==4081479== by 0xE337822: ??? ==4081479== by 0xE33796F: ??? ==4081479== by 0x13F1C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==4081479== by 0x13F1C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==4081479== by 0x13ED2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==4081479== by 0x13E772DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==4081479== by 0xF7FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==4081479== by 0xF796D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==4081479== by 0xE48DD38: PetscInitialize (pinit.c:924) ==4081479== by 0xE2FF58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==4081479== by 0xE2FF5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==4081479== by 0x41307D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==4081479== by 0x4063D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==4081479== by 0x40C526: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==4081479== by 0x40C3C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==4081479== by 0x40CA5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==4081479== by 0x4046C0: main (TestVertexBasedCellPopulation.cpp:19) ==4081479== ==4081479== Open file descriptor 115: ==4081479== ==4081479== ==4081479== Open file descriptor 110: ==4081479== ==4081479== ==4081479== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulation_valgrind.txt ==4081479== ==4081479== ==4081479== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==4081479== ==4081479== ==4081479== ==4081479== HEAP SUMMARY: ==4081479== in use at exit: 863,003 bytes in 9,840 blocks ==4081479== total heap usage: 172,568 allocs, 162,728 frees, 1,365,337,051 bytes allocated ==4081479== ==4081479== 192 (40 direct, 152 indirect) bytes in 1 blocks are definitely lost in loss record 250 of 369 ==4081479== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==4081479== by 0xDC82E56: VertexMeshOperationRecorder<2u, 2u>::RecordEdgeSplitOperation(VertexElement<2u, 2u>*, unsigned int, double, bool) (VertexMeshOperationRecorder.cpp:281) ==4081479== by 0xDB9E3DF: MutableVertexMesh<2u, 2u>::DivideElementAlongGivenAxis(VertexElement<2u, 2u>*, boost::numeric::ublas::c_vector, bool) (MutableVertexMesh.cpp:649) ==4081479== by 0xA397838: VertexBasedCellPopulation<2u>::AddCell(boost::shared_ptr, boost::shared_ptr) (VertexBasedCellPopulation.cpp:252) ==4081479== by 0x41ADB3: TestVertexBasedCellPopulation::TestAddCellWithSimpleMesh() (TestVertexBasedCellPopulation.hpp:497) ==4081479== by 0x43DD66: TestDescription_TestVertexBasedCellPopulation_TestAddCellWithSimpleMesh::runTest() (TestVertexBasedCellPopulation.cpp:67) ==4081479== by 0x4059CE: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==4081479== by 0x40C7D4: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==4081479== by 0x40C6B9: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==4081479== by 0x40C55F: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==4081479== by 0x40C3C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==4081479== by 0x40CA5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==4081479== by 0x4046C0: main (TestVertexBasedCellPopulation.cpp:19) ==4081479== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN27VertexMeshOperationRecorderILj2ELj2EE24RecordEdgeSplitOperationEP13VertexElementILj2ELj2EEjdb fun:_ZN17MutableVertexMeshILj2ELj2EE27DivideElementAlongGivenAxisEP13VertexElementILj2ELj2EEN5boost7numeric5ublas8c_vectorIdLm2EEEb fun:_ZN25VertexBasedCellPopulationILj2EE7AddCellEN5boost10shared_ptrI4CellEES4_ fun:_ZN29TestVertexBasedCellPopulation25TestAddCellWithSimpleMeshEv fun:_ZN71TestDescription_TestVertexBasedCellPopulation_TestAddCellWithSimpleMesh7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==4081479== 344 (40 direct, 304 indirect) bytes in 1 blocks are definitely lost in loss record 285 of 369 ==4081479== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==4081479== by 0xDC83C92: VertexMeshOperationRecorder<2u, 2u>::RecordCellDivideOperation(std::vector > const&, VertexElement<2u, 2u>*, VertexElement<2u, 2u>*) (VertexMeshOperationRecorder.cpp:411) ==4081479== by 0xDB9E35D: MutableVertexMesh<2u, 2u>::DivideElementAlongGivenAxis(VertexElement<2u, 2u>*, boost::numeric::ublas::c_vector, bool) (MutableVertexMesh.cpp:645) ==4081479== by 0xA397838: VertexBasedCellPopulation<2u>::AddCell(boost::shared_ptr, boost::shared_ptr) (VertexBasedCellPopulation.cpp:252) ==4081479== by 0x41ADB3: TestVertexBasedCellPopulation::TestAddCellWithSimpleMesh() (TestVertexBasedCellPopulation.hpp:497) ==4081479== by 0x43DD66: TestDescription_TestVertexBasedCellPopulation_TestAddCellWithSimpleMesh::runTest() (TestVertexBasedCellPopulation.cpp:67) ==4081479== by 0x4059CE: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==4081479== by 0x40C7D4: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==4081479== by 0x40C6B9: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==4081479== by 0x40C55F: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==4081479== by 0x40C3C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==4081479== by 0x40CA5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==4081479== by 0x4046C0: main (TestVertexBasedCellPopulation.cpp:19) ==4081479== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN27VertexMeshOperationRecorderILj2ELj2EE25RecordCellDivideOperationERKSt6vectorIjSaIjEEP13VertexElementILj2ELj2EES8_ fun:_ZN17MutableVertexMeshILj2ELj2EE27DivideElementAlongGivenAxisEP13VertexElementILj2ELj2EEN5boost7numeric5ublas8c_vectorIdLm2EEEb fun:_ZN25VertexBasedCellPopulationILj2EE7AddCellEN5boost10shared_ptrI4CellEES4_ fun:_ZN29TestVertexBasedCellPopulation25TestAddCellWithSimpleMeshEv fun:_ZN71TestDescription_TestVertexBasedCellPopulation_TestAddCellWithSimpleMesh7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==4081479== 552 bytes in 1 blocks are definitely lost in loss record 306 of 369 ==4081479== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==4081479== by 0x191DFC13: ??? ==4081479== by 0x191E022C: ??? ==4081479== by 0x191534B7: ??? ==4081479== by 0xF76315A: ompi_proc_complete_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==4081479== by 0xF7FDA97: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==4081479== by 0xF796D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==4081479== by 0xE48DD38: PetscInitialize (pinit.c:924) ==4081479== by 0xE2FF58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==4081479== by 0xE2FF5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==4081479== by 0x41307D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==4081479== by 0x4063D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==4081479== by 0x40C526: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==4081479== by 0x40C3C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==4081479== by 0x40CA5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==4081479== by 0x4046C0: main (TestVertexBasedCellPopulation.cpp:19) ==4081479== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* fun:ompi_proc_complete_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==4081479== 2,040 bytes in 1 blocks are possibly lost in loss record 337 of 369 ==4081479== at 0x484DCD3: realloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==4081479== by 0xFC0724B: vtkAOSDataArrayTemplate::ReallocateTuples(long long) (in /usr/lib/x86_64-linux-gnu/libvtkCommonCore-7.1.so.7.1p.1) ==4081479== by 0xFC076B9: ??? (in /usr/lib/x86_64-linux-gnu/libvtkCommonCore-7.1.so.7.1p.1) ==4081479== by 0xDC4AAC5: vtkGenericDataArray, double>::EnsureAccessToTuple(long long) (vtkGenericDataArray.txx:912) ==4081479== by 0xDC4A840: vtkGenericDataArray, double>::InsertNextValue(double) (vtkGenericDataArray.txx:786) ==4081479== by 0xDC48AD7: TrapezoidEdgeVertexMeshWriter<2u, 2u>::AddCellData(std::__cxx11::basic_string, std::allocator >, std::vector >) (TrapezoidEdgeVertexMeshWriter.cpp:212) ==4081479== by 0xA394A8D: VertexBasedCellPopulation<2u>::WriteCellEdgeVtkResultsToFile(std::__cxx11::basic_string, std::allocator > const&) (VertexBasedCellPopulation.cpp:706) ==4081479== by 0xA392E69: VertexBasedCellPopulation<2u>::WriteVtkResultsToFile(std::__cxx11::basic_string, std::allocator > const&) (VertexBasedCellPopulation.cpp:471) ==4081479== by 0x43ABD1: TestVertexBasedCellPopulation::TestOutputVtkCellEdges() (TestVertexBasedCellPopulation.hpp:1588) ==4081479== by 0x43E18A: TestDescription_TestVertexBasedCellPopulation_TestOutputVtkCellEdges::runTest() (TestVertexBasedCellPopulation.cpp:127) ==4081479== by 0x4059CE: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==4081479== by 0x40C7D4: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==4081479== by 0x40C6B9: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==4081479== by 0x40C55F: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==4081479== by 0x40C3C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==4081479== by 0x40CA5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==4081479== by 0x4046C0: main (TestVertexBasedCellPopulation.cpp:19) ==4081479== { Memcheck:Leak match-leak-kinds: possible fun:realloc fun:_ZN23vtkAOSDataArrayTemplateIdE16ReallocateTuplesEx obj:/usr/lib/x86_64-linux-gnu/libvtkCommonCore-7.1.so.7.1p.1 fun:_ZN19vtkGenericDataArrayI23vtkAOSDataArrayTemplateIdEdE19EnsureAccessToTupleEx fun:_ZN19vtkGenericDataArrayI23vtkAOSDataArrayTemplateIdEdE15InsertNextValueEd fun:_ZN29TrapezoidEdgeVertexMeshWriterILj2ELj2EE11AddCellDataENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIdSaIdEE fun:_ZN25VertexBasedCellPopulationILj2EE29WriteCellEdgeVtkResultsToFileERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE fun:_ZN25VertexBasedCellPopulationILj2EE21WriteVtkResultsToFileERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE fun:_ZN29TestVertexBasedCellPopulation22TestOutputVtkCellEdgesEv fun:_ZN68TestDescription_TestVertexBasedCellPopulation_TestOutputVtkCellEdges7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==4081479== 36,578 (576 direct, 36,002 indirect) bytes in 1 blocks are definitely lost in loss record 361 of 369 ==4081479== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==4081479== by 0x117939F4: vtkUnstructuredGrid::New() (in /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-7.1.so.7.1p.1) ==4081479== by 0xDC47C82: TrapezoidEdgeVertexMeshWriter<2u, 2u>::TrapezoidEdgeVertexMeshWriter(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool) (TrapezoidEdgeVertexMeshWriter.cpp:49) ==4081479== by 0xA394585: VertexBasedCellPopulation<2u>::WriteCellEdgeVtkResultsToFile(std::__cxx11::basic_string, std::allocator > const&) (VertexBasedCellPopulation.cpp:655) ==4081479== by 0xA392E69: VertexBasedCellPopulation<2u>::WriteVtkResultsToFile(std::__cxx11::basic_string, std::allocator > const&) (VertexBasedCellPopulation.cpp:471) ==4081479== by 0x43ABD1: TestVertexBasedCellPopulation::TestOutputVtkCellEdges() (TestVertexBasedCellPopulation.hpp:1588) ==4081479== by 0x43E18A: TestDescription_TestVertexBasedCellPopulation_TestOutputVtkCellEdges::runTest() (TestVertexBasedCellPopulation.cpp:127) ==4081479== by 0x4059CE: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==4081479== by 0x40C7D4: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==4081479== by 0x40C6B9: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==4081479== by 0x40C55F: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==4081479== by 0x40C3C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==4081479== by 0x40CA5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==4081479== by 0x4046C0: main (TestVertexBasedCellPopulation.cpp:19) ==4081479== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN19vtkUnstructuredGrid3NewEv fun:_ZN29TrapezoidEdgeVertexMeshWriterILj2ELj2EEC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_b fun:_ZN25VertexBasedCellPopulationILj2EE29WriteCellEdgeVtkResultsToFileERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE fun:_ZN25VertexBasedCellPopulationILj2EE21WriteVtkResultsToFileERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE fun:_ZN29TestVertexBasedCellPopulation22TestOutputVtkCellEdgesEv fun:_ZN68TestDescription_TestVertexBasedCellPopulation_TestOutputVtkCellEdges7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==4081479== 38,618 (576 direct, 38,042 indirect) bytes in 1 blocks are definitely lost in loss record 362 of 369 ==4081479== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==4081479== by 0x117939F4: vtkUnstructuredGrid::New() (in /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-7.1.so.7.1p.1) ==4081479== by 0xDC47C82: TrapezoidEdgeVertexMeshWriter<2u, 2u>::TrapezoidEdgeVertexMeshWriter(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool) (TrapezoidEdgeVertexMeshWriter.cpp:49) ==4081479== by 0xA394585: VertexBasedCellPopulation<2u>::WriteCellEdgeVtkResultsToFile(std::__cxx11::basic_string, std::allocator > const&) (VertexBasedCellPopulation.cpp:655) ==4081479== by 0xA392E69: VertexBasedCellPopulation<2u>::WriteVtkResultsToFile(std::__cxx11::basic_string, std::allocator > const&) (VertexBasedCellPopulation.cpp:471) ==4081479== by 0x43AC0B: TestVertexBasedCellPopulation::TestOutputVtkCellEdges() (TestVertexBasedCellPopulation.hpp:1592) ==4081479== by 0x43E18A: TestDescription_TestVertexBasedCellPopulation_TestOutputVtkCellEdges::runTest() (TestVertexBasedCellPopulation.cpp:127) ==4081479== by 0x4059CE: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==4081479== by 0x40C7D4: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==4081479== by 0x40C6B9: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==4081479== by 0x40C55F: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==4081479== by 0x40C3C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==4081479== by 0x40CA5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==4081479== by 0x4046C0: main (TestVertexBasedCellPopulation.cpp:19) ==4081479== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN19vtkUnstructuredGrid3NewEv fun:_ZN29TrapezoidEdgeVertexMeshWriterILj2ELj2EEC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_b fun:_ZN25VertexBasedCellPopulationILj2EE29WriteCellEdgeVtkResultsToFileERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE fun:_ZN25VertexBasedCellPopulationILj2EE21WriteVtkResultsToFileERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE fun:_ZN29TestVertexBasedCellPopulation22TestOutputVtkCellEdgesEv fun:_ZN68TestDescription_TestVertexBasedCellPopulation_TestOutputVtkCellEdges7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==4081479== 42,228 (576 direct, 41,652 indirect) bytes in 1 blocks are definitely lost in loss record 363 of 369 ==4081479== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==4081479== by 0x117939F4: vtkUnstructuredGrid::New() (in /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-7.1.so.7.1p.1) ==4081479== by 0xDC47C82: TrapezoidEdgeVertexMeshWriter<2u, 2u>::TrapezoidEdgeVertexMeshWriter(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool) (TrapezoidEdgeVertexMeshWriter.cpp:49) ==4081479== by 0xA394585: VertexBasedCellPopulation<2u>::WriteCellEdgeVtkResultsToFile(std::__cxx11::basic_string, std::allocator > const&) (VertexBasedCellPopulation.cpp:655) ==4081479== by 0xA392E69: VertexBasedCellPopulation<2u>::WriteVtkResultsToFile(std::__cxx11::basic_string, std::allocator > const&) (VertexBasedCellPopulation.cpp:471) ==4081479== by 0x43BD8E: TestVertexBasedCellPopulation::TestOutputVtkCellEdgesWithInterior() (TestVertexBasedCellPopulation.hpp:1659) ==4081479== by 0x43E1F4: TestDescription_TestVertexBasedCellPopulation_TestOutputVtkCellEdgesWithInterior::runTest() (TestVertexBasedCellPopulation.cpp:133) ==4081479== by 0x4059CE: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==4081479== by 0x40C7D4: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==4081479== by 0x40C6B9: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==4081479== by 0x40C55F: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==4081479== by 0x40C3C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==4081479== by 0x40CA5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==4081479== by 0x4046C0: main (TestVertexBasedCellPopulation.cpp:19) ==4081479== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN19vtkUnstructuredGrid3NewEv fun:_ZN29TrapezoidEdgeVertexMeshWriterILj2ELj2EEC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_b fun:_ZN25VertexBasedCellPopulationILj2EE29WriteCellEdgeVtkResultsToFileERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE fun:_ZN25VertexBasedCellPopulationILj2EE21WriteVtkResultsToFileERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE fun:_ZN29TestVertexBasedCellPopulation34TestOutputVtkCellEdgesWithInteriorEv fun:_ZN80TestDescription_TestVertexBasedCellPopulation_TestOutputVtkCellEdgesWithInterior7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==4081479== 42,228 (576 direct, 41,652 indirect) bytes in 1 blocks are definitely lost in loss record 364 of 369 ==4081479== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==4081479== by 0x117939F4: vtkUnstructuredGrid::New() (in /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-7.1.so.7.1p.1) ==4081479== by 0xDC47C82: TrapezoidEdgeVertexMeshWriter<2u, 2u>::TrapezoidEdgeVertexMeshWriter(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool) (TrapezoidEdgeVertexMeshWriter.cpp:49) ==4081479== by 0xA394585: VertexBasedCellPopulation<2u>::WriteCellEdgeVtkResultsToFile(std::__cxx11::basic_string, std::allocator > const&) (VertexBasedCellPopulation.cpp:655) ==4081479== by 0xA392E69: VertexBasedCellPopulation<2u>::WriteVtkResultsToFile(std::__cxx11::basic_string, std::allocator > const&) (VertexBasedCellPopulation.cpp:471) ==4081479== by 0x43BDC8: TestVertexBasedCellPopulation::TestOutputVtkCellEdgesWithInterior() (TestVertexBasedCellPopulation.hpp:1663) ==4081479== by 0x43E1F4: TestDescription_TestVertexBasedCellPopulation_TestOutputVtkCellEdgesWithInterior::runTest() (TestVertexBasedCellPopulation.cpp:133) ==4081479== by 0x4059CE: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==4081479== by 0x40C7D4: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==4081479== by 0x40C6B9: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==4081479== by 0x40C55F: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==4081479== by 0x40C3C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==4081479== by 0x40CA5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==4081479== by 0x4046C0: main (TestVertexBasedCellPopulation.cpp:19) ==4081479== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN19vtkUnstructuredGrid3NewEv fun:_ZN29TrapezoidEdgeVertexMeshWriterILj2ELj2EEC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_b fun:_ZN25VertexBasedCellPopulationILj2EE29WriteCellEdgeVtkResultsToFileERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE fun:_ZN25VertexBasedCellPopulationILj2EE21WriteVtkResultsToFileERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE fun:_ZN29TestVertexBasedCellPopulation34TestOutputVtkCellEdgesWithInteriorEv fun:_ZN80TestDescription_TestVertexBasedCellPopulation_TestOutputVtkCellEdgesWithInterior7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==4081479== 84,459 (136 direct, 84,323 indirect) bytes in 1 blocks are definitely lost in loss record 366 of 369 ==4081479== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==4081479== by 0x1A75274E: ??? ==4081479== by 0x1A752E0B: ??? ==4081479== by 0x1A755F56: ??? ==4081479== by 0x1A74B65D: ??? ==4081479== by 0x1A74BFA3: ??? ==4081479== by 0x13F88F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==4081479== by 0x13F64AE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==4081479== by 0x13F15CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==4081479== by 0x13E42EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==4081479== by 0x18911F03: ??? ==4081479== by 0x13E774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==4081479== by 0xF7FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==4081479== by 0xF796D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==4081479== by 0xE48DD38: PetscInitialize (pinit.c:924) ==4081479== by 0xE2FF58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==4081479== by 0xE2FF5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==4081479== by 0x41307D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==4081479== by 0x4063D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==4081479== by 0x40C526: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==4081479== by 0x40C3C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==4081479== by 0x40CA5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==4081479== by 0x4046C0: main (TestVertexBasedCellPopulation.cpp:19) ==4081479== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* obj:* obj:* obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2 fun:hwloc_topology_load fun:opal_hwloc_base_get_topology fun:orte_ess_base_proc_binding obj:* fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==4081479== LEAK SUMMARY: ==4081479== definitely lost: 3,072 bytes in 8 blocks ==4081479== indirectly lost: 159,564 bytes in 471 blocks ==4081479== possibly lost: 2,040 bytes in 1 blocks ==4081479== still reachable: 1,563 bytes in 7 blocks ==4081479== suppressed: 696,764 bytes in 9,353 blocks ==4081479== Reachable blocks (those to which a pointer was found) are not shown. ==4081479== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==4081479== ==4081479== Use --track-origins=yes to see where uninitialised values come from ==4081479== For lists of detected and suppressed errors, rerun with: -s ==4081479== ERROR SUMMARY: 36 errors from 14 contexts (suppressed: 32 from 32)