==79345== Memcheck, a memory error detector ==79345== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==79345== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==79345== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewForceTutorial -malloc_debug -malloc_dump -memory_info ==79345== Parent PID: 68882 ==79345== ==79345== WARNING: pwritev(vector[...]) is an obsolete suppression line not supported in valgrind 3.15 or later. ==79345== You should replace [...] by a specific index such as [0] or [1] or [2] or similar ==79345== ==79345== Syscall param socketcall.getsockopt(optlen) points to uninitialised byte(s) ==79345== at 0xFFEC79E: getsockopt_syscall (getsockopt.c:29) ==79345== by 0xFFEC79E: getsockopt (getsockopt.c:94) ==79345== by 0x192CA157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==79345== by 0x192D1A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==79345== by 0x192D8DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==79345== by 0x191D83C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==79345== by 0x19151E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==79345== by 0x18910E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==79345== by 0x13E774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==79345== by 0xF7FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==79345== by 0xF796D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==79345== by 0xE48DD38: PetscInitialize (pinit.c:924) ==79345== by 0xE2FF58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==79345== by 0xE2FF5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==79345== by 0x14DDF1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==79345== by 0x147181: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==79345== by 0x149BC2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==79345== by 0x149ABE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==79345== by 0x14A0D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==79345== by 0x145940: main (TestCreatingAndUsingANewForceTutorial.cpp:18) ==79345== Address 0x1ffeffdf7c is on thread 1's stack ==79345== in frame #2, created by pmix_ptl_base_make_connection (???:) ==79345== { Memcheck:Param socketcall.getsockopt(optlen) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==79345== Syscall param socketcall.getsockopt(optlen_out) points to uninitialised byte(s) ==79345== at 0xFFEC79E: getsockopt_syscall (getsockopt.c:29) ==79345== by 0xFFEC79E: getsockopt (getsockopt.c:94) ==79345== by 0x192CA157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==79345== by 0x192D1A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==79345== by 0x192D8DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==79345== by 0x191D83C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==79345== by 0x19151E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==79345== by 0x18910E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==79345== by 0x13E774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==79345== by 0xF7FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==79345== by 0xF796D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==79345== by 0xE48DD38: PetscInitialize (pinit.c:924) ==79345== by 0xE2FF58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==79345== by 0xE2FF5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==79345== by 0x14DDF1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==79345== by 0x147181: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==79345== by 0x149BC2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==79345== by 0x149ABE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==79345== by 0x14A0D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==79345== by 0x145940: main (TestCreatingAndUsingANewForceTutorial.cpp:18) ==79345== Address 0x1ffeffdf7c is on thread 1's stack ==79345== in frame #2, created by pmix_ptl_base_make_connection (???:) ==79345== { Memcheck:Param socketcall.getsockopt(optlen_out) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==79345== Syscall param setsockopt(optlen) contains uninitialised byte(s) ==79345== at 0xFFECC7E: setsockopt_syscall (setsockopt.c:29) ==79345== by 0xFFECC7E: setsockopt (setsockopt.c:95) ==79345== by 0x192D1BA9: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==79345== by 0x192D8DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==79345== by 0x191D83C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==79345== by 0x19151E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==79345== by 0x18910E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==79345== by 0x13E774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==79345== by 0xF7FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==79345== by 0xF796D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==79345== by 0xE48DD38: PetscInitialize (pinit.c:924) ==79345== by 0xE2FF58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==79345== by 0xE2FF5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==79345== by 0x14DDF1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==79345== by 0x147181: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==79345== by 0x149BC2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==79345== by 0x149ABE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==79345== by 0x14A0D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==79345== by 0x145940: main (TestCreatingAndUsingANewForceTutorial.cpp:18) ==79345== { Memcheck:Param setsockopt(optlen) fun:setsockopt_syscall fun:setsockopt fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==79345== ==79345== FILE DESCRIPTORS: 9 open (3 std) at exit. ==79345== Open file descriptor 12: ==79345== at 0xFFDA22D: pipe (pipe.c:29) ==79345== by 0x1891107D: ??? ==79345== by 0x13E774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==79345== by 0xF7FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==79345== by 0xF796D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==79345== by 0xE48DD38: PetscInitialize (pinit.c:924) ==79345== by 0xE2FF58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==79345== by 0xE2FF5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==79345== by 0x14DDF1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==79345== by 0x147181: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==79345== by 0x149BC2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==79345== by 0x149ABE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==79345== by 0x14A0D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==79345== by 0x145940: main (TestCreatingAndUsingANewForceTutorial.cpp:18) ==79345== ==79345== Open file descriptor 8: /dev/shm/open_mpi.0000 ==79345== at 0xFFDEBCC: __open_nocancel (open64_nocancel.c:39) ==79345== by 0xFF62C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==79345== by 0xE337822: ??? ==79345== by 0xE33796F: ??? ==79345== by 0x13F1C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==79345== by 0x13F1C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==79345== by 0x13ED2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==79345== by 0x13E772DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==79345== by 0xF7FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==79345== by 0xF796D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==79345== by 0xE48DD38: PetscInitialize (pinit.c:924) ==79345== by 0xE2FF58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==79345== by 0xE2FF5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==79345== by 0x14DDF1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==79345== by 0x147181: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==79345== by 0x149BC2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==79345== by 0x149ABE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==79345== by 0x14A0D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==79345== by 0x145940: main (TestCreatingAndUsingANewForceTutorial.cpp:18) ==79345== ==79345== Open file descriptor 115: ==79345== ==79345== ==79345== Open file descriptor 110: ==79345== ==79345== ==79345== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewForceTutorial_valgrind.txt ==79345== ==79345== ==79345== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==79345== ==79345== ==79345== ==79345== HEAP SUMMARY: ==79345== in use at exit: 700,765 bytes in 9,378 blocks ==79345== total heap usage: 681,781 allocs, 672,403 frees, 1,565,015,581 bytes allocated ==79345== ==79345== 32 bytes in 1 blocks are possibly lost in loss record 17 of 69 ==79345== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==79345== by 0x1A75271E: ??? ==79345== by 0x1A752E0B: ??? ==79345== by 0x1A755F56: ??? ==79345== by 0x1A74B65D: ??? ==79345== by 0x1A74BFA3: ??? ==79345== by 0x13F88F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==79345== by 0x13F64AE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==79345== by 0x13F15CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==79345== by 0x13E42EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==79345== by 0x18911F03: ??? ==79345== by 0x13E774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==79345== by 0xF7FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==79345== by 0xF796D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==79345== by 0xE48DD38: PetscInitialize (pinit.c:924) ==79345== by 0xE2FF58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==79345== by 0xE2FF5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==79345== by 0x14DDF1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==79345== by 0x147181: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==79345== by 0x149BC2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==79345== by 0x149ABE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==79345== by 0x14A0D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==79345== by 0x145940: main (TestCreatingAndUsingANewForceTutorial.cpp:18) ==79345== { Memcheck:Leak match-leak-kinds: possible fun:calloc obj:* obj:* obj:* obj:* obj:* obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2 fun:hwloc_topology_load fun:opal_hwloc_base_get_topology fun:orte_ess_base_proc_binding obj:* fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==79345== 408 bytes in 3 blocks are possibly lost in loss record 40 of 69 ==79345== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==79345== by 0x1A7526E8: ??? ==79345== by 0x1A752E0B: ??? ==79345== by 0x1A755F56: ??? ==79345== by 0x1A74B65D: ??? ==79345== by 0x1A74BFA3: ??? ==79345== by 0x13F88F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==79345== by 0x13F64AE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==79345== by 0x13F15CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==79345== by 0x13E42EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==79345== by 0x18911F03: ??? ==79345== by 0x13E774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==79345== by 0xF7FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==79345== by 0xF796D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==79345== by 0xE48DD38: PetscInitialize (pinit.c:924) ==79345== by 0xE2FF58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==79345== by 0xE2FF5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==79345== by 0x14DDF1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==79345== by 0x147181: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==79345== by 0x149BC2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==79345== by 0x149ABE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==79345== by 0x14A0D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==79345== by 0x145940: main (TestCreatingAndUsingANewForceTutorial.cpp:18) ==79345== { Memcheck:Leak match-leak-kinds: possible fun:calloc obj:* obj:* obj:* obj:* obj:* obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2 fun:hwloc_topology_load fun:opal_hwloc_base_get_topology fun:orte_ess_base_proc_binding obj:* fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==79345== 552 bytes in 1 blocks are definitely lost in loss record 43 of 69 ==79345== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==79345== by 0x191DFC13: ??? ==79345== by 0x191E022C: ??? ==79345== by 0x191534B7: ??? ==79345== by 0xF76315A: ompi_proc_complete_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==79345== by 0xF7FDA97: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==79345== by 0xF796D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==79345== by 0xE48DD38: PetscInitialize (pinit.c:924) ==79345== by 0xE2FF58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==79345== by 0xE2FF5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==79345== by 0x14DDF1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==79345== by 0x147181: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==79345== by 0x149BC2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==79345== by 0x149ABE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==79345== by 0x14A0D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==79345== by 0x145940: main (TestCreatingAndUsingANewForceTutorial.cpp:18) ==79345== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* fun:ompi_proc_complete_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==79345== 22,852 (136 direct, 22,716 indirect) bytes in 1 blocks are definitely lost in loss record 66 of 69 ==79345== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==79345== by 0x1A75274E: ??? ==79345== by 0x1A752E0B: ??? ==79345== by 0x1A755F56: ??? ==79345== by 0x1A74B65D: ??? ==79345== by 0x1A74BFA3: ??? ==79345== by 0x13F88F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==79345== by 0x13F64AE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==79345== by 0x13F15CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==79345== by 0x13E42EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==79345== by 0x18911F03: ??? ==79345== by 0x13E774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==79345== by 0xF7FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==79345== by 0xF796D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==79345== by 0xE48DD38: PetscInitialize (pinit.c:924) ==79345== by 0xE2FF58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==79345== by 0xE2FF5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==79345== by 0x14DDF1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==79345== by 0x147181: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==79345== by 0x149BC2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==79345== by 0x149ABE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==79345== by 0x14A0D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==79345== by 0x145940: main (TestCreatingAndUsingANewForceTutorial.cpp:18) ==79345== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* obj:* obj:* obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2 fun:hwloc_topology_load fun:opal_hwloc_base_get_topology fun:orte_ess_base_proc_binding obj:* fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==79345== LEAK SUMMARY: ==79345== definitely lost: 688 bytes in 2 blocks ==79345== indirectly lost: 1,320 bytes in 12 blocks ==79345== possibly lost: 440 bytes in 4 blocks ==79345== still reachable: 1,563 bytes in 7 blocks ==79345== suppressed: 696,754 bytes in 9,353 blocks ==79345== Reachable blocks (those to which a pointer was found) are not shown. ==79345== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==79345== ==79345== Use --track-origins=yes to see where uninitialised values come from ==79345== For lists of detected and suppressed errors, rerun with: -s ==79345== ERROR SUMMARY: 7 errors from 7 contexts (suppressed: 33 from 33)