==583660== Memcheck, a memory error detector ==583660== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==583660== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==583660== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestEdgeInteriorSrn -malloc_debug -malloc_dump -memory_info ==583660== Parent PID: 582436 ==583660== ==583660== WARNING: pwritev(vector[...]) is an obsolete suppression line not supported in valgrind 3.15 or later. ==583660== You should replace [...] by a specific index such as [0] or [1] or [2] or similar ==583660== ==583660== Syscall param socketcall.getsockopt(optlen) points to uninitialised byte(s) ==583660== at 0xEA4F79E: getsockopt_syscall (getsockopt.c:29) ==583660== by 0xEA4F79E: getsockopt (getsockopt.c:94) ==583660== by 0x192CC157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==583660== by 0x192D3A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==583660== by 0x192DADF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==583660== by 0x191DA3C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==583660== by 0x19153E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==583660== by 0x18912E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==583660== by 0x13F154CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==583660== by 0x106DB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==583660== by 0x10674D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==583660== by 0xF369D38: PetscInitialize (pinit.c:924) ==583660== by 0xE30058B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==583660== by 0xE3005D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==583660== by 0x13C330: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==583660== by 0x13577F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==583660== by 0x1385A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==583660== by 0x138442: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==583660== by 0x138AD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==583660== by 0x133AB0: main (TestEdgeInteriorSrn.cpp:19) ==583660== Address 0x1ffeffdfac is on thread 1's stack ==583660== in frame #2, created by pmix_ptl_base_make_connection (???:) ==583660== { Memcheck:Param socketcall.getsockopt(optlen) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==583660== Syscall param socketcall.getsockopt(optlen_out) points to uninitialised byte(s) ==583660== at 0xEA4F79E: getsockopt_syscall (getsockopt.c:29) ==583660== by 0xEA4F79E: getsockopt (getsockopt.c:94) ==583660== by 0x192CC157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==583660== by 0x192D3A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==583660== by 0x192DADF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==583660== by 0x191DA3C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==583660== by 0x19153E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==583660== by 0x18912E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==583660== by 0x13F154CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==583660== by 0x106DB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==583660== by 0x10674D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==583660== by 0xF369D38: PetscInitialize (pinit.c:924) ==583660== by 0xE30058B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==583660== by 0xE3005D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==583660== by 0x13C330: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==583660== by 0x13577F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==583660== by 0x1385A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==583660== by 0x138442: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==583660== by 0x138AD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==583660== by 0x133AB0: main (TestEdgeInteriorSrn.cpp:19) ==583660== Address 0x1ffeffdfac is on thread 1's stack ==583660== in frame #2, created by pmix_ptl_base_make_connection (???:) ==583660== { Memcheck:Param socketcall.getsockopt(optlen_out) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==583660== Syscall param setsockopt(optlen) contains uninitialised byte(s) ==583660== at 0xEA4FC7E: setsockopt_syscall (setsockopt.c:29) ==583660== by 0xEA4FC7E: setsockopt (setsockopt.c:95) ==583660== by 0x192D3BA9: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==583660== by 0x192DADF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==583660== by 0x191DA3C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==583660== by 0x19153E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==583660== by 0x18912E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==583660== by 0x13F154CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==583660== by 0x106DB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==583660== by 0x10674D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==583660== by 0xF369D38: PetscInitialize (pinit.c:924) ==583660== by 0xE30058B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==583660== by 0xE3005D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==583660== by 0x13C330: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==583660== by 0x13577F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==583660== by 0x1385A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==583660== by 0x138442: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==583660== by 0x138AD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==583660== by 0x133AB0: main (TestEdgeInteriorSrn.cpp:19) ==583660== { Memcheck:Param setsockopt(optlen) fun:setsockopt_syscall fun:setsockopt fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==583660== Use of uninitialised value of size 8 ==583660== at 0xE4E781B: ??? (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==583660== by 0xE4E7F99: std::ostreambuf_iterator > std::num_put > >::_M_insert_int(std::ostreambuf_iterator >, std::ios_base&, char, unsigned long) const (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==583660== by 0xE4F6399: std::ostream& std::ostream::_M_insert(unsigned long) (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==583660== by 0x155DF0: void boost::archive::basic_text_oprimitive::save_impl(unsigned int const&, mpl_::bool_&) (basic_text_oprimitive.hpp:130) ==583660== by 0x1555D1: void boost::archive::basic_text_oprimitive::save(unsigned int const&) (basic_text_oprimitive.hpp:180) ==583660== by 0x1552C6: void boost::archive::text_oarchive_impl::save(unsigned int const&) (text_oarchive.hpp:65) ==583660== by 0x9AEEF99: void boost::archive::save_access::save_primitive(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:93) ==583660== by 0x9AED829: void boost::archive::detail::save_non_pointer_type::save_primitive::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:237) ==583660== by 0x9AEBC7E: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:315) ==583660== by 0x9AE9832: void boost::archive::save(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:539) ==583660== by 0x9AE7A1B: void boost::archive::detail::common_oarchive::save_override(unsigned int const&) (common_oarchive.hpp:71) ==583660== by 0x9AE4CD4: void boost::archive::basic_text_oarchive::save_override(unsigned int const&) (basic_text_oarchive.hpp:83) ==583660== by 0x9AE2EC7: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (unsigned int const&) (interface_oarchive.hpp:70) ==583660== by 0x9AE192B: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(unsigned int const&) (interface_oarchive.hpp:77) ==583660== by 0x9C595ED: void AbstractSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (AbstractSrnModel.hpp:83) ==583660== by 0x9C58772: void boost::serialization::access::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (access.hpp:116) ==583660== by 0x9C5748C: void boost::serialization::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:68) ==583660== by 0x9C56682: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:118) ==583660== by 0x9C55FAD: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==583660== by 0x9C55A3D: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:258) ==583660== by 0x9C55607: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:315) ==583660== by 0x9C551D8: void boost::archive::save(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:539) ==583660== by 0x9C54E77: void boost::archive::detail::common_oarchive::save_override(AbstractSrnModel const&) (common_oarchive.hpp:71) ==583660== by 0x9C54B06: void boost::archive::basic_text_oarchive::save_override(AbstractSrnModel const&) (basic_text_oarchive.hpp:83) ==583660== by 0x9C546E1: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (AbstractSrnModel const&) (interface_oarchive.hpp:70) ==583660== by 0x9C5436B: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(AbstractSrnModel const&) (interface_oarchive.hpp:77) ==583660== by 0x9C5403A: void CellSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (CellSrnModel.hpp:72) ==583660== by 0x9C53C64: void boost::serialization::access::serialize(boost::archive::text_oarchive&, CellSrnModel&, unsigned int) (access.hpp:116) ==583660== by 0x9C535F4: void boost::serialization::serialize(boost::archive::text_oarchive&, CellSrnModel&, unsigned int) (serialization.hpp:68) ==583660== by 0x9C52E44: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, CellSrnModel&, unsigned int) (serialization.hpp:118) ==583660== by 0x9C527CB: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==583660== by 0x9C56A7D: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, CellSrnModel const&) (oserializer.hpp:258) ==583660== by 0x9C56154: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, CellSrnModel const&) (oserializer.hpp:315) ==583660== by 0x9C55B12: void boost::archive::save(boost::archive::text_oarchive&, CellSrnModel const&) (oserializer.hpp:539) ==583660== by 0x9C5569B: void boost::archive::detail::common_oarchive::save_override(CellSrnModel const&) (common_oarchive.hpp:71) ==583660== by 0x9C55256: void boost::archive::basic_text_oarchive::save_override(CellSrnModel const&) (basic_text_oarchive.hpp:83) ==583660== by 0x9C54F2F: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (CellSrnModel const&) (interface_oarchive.hpp:70) ==583660== by 0x9C54B92: void boost::serialization::save(boost::archive::text_oarchive&, boost::serialization::nvp const&, unsigned int) (nvp.hpp:48) ==583660== by 0x9C547C9: boost::serialization::free_saver >::invoke(boost::archive::text_oarchive&, boost::serialization::nvp const&, unsigned int) (split_free.hpp:45) ==583660== by 0x9C54402: void boost::serialization::split_free >(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (split_free.hpp:74) ==583660== by 0x9C54098: void boost::serialization::serialize(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (nvp.hpp:65) ==583660== by 0x9C53CC1: void boost::serialization::serialize_adl >(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (serialization.hpp:118) ==583660== by 0x9C5362E: void boost::archive::detail::save_non_pointer_type::save_only::invoke >(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:246) ==583660== by 0x9C52E87: void boost::archive::detail::save_non_pointer_type::invoke >(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:315) ==583660== by 0x9C5280D: void boost::archive::save const>(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:539) ==583660== by 0x9C5239F: void boost::archive::detail::common_oarchive::save_override const>(boost::serialization::nvp const&) (common_oarchive.hpp:71) ==583660== by 0x9C51DB6: void boost::archive::basic_text_oarchive::save_override const>(boost::serialization::nvp const&) (basic_text_oarchive.hpp:83) ==583660== by 0x9C5162B: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< >(boost::serialization::nvp const&) (interface_oarchive.hpp:70) ==583660== by 0x9C50E2E: boost::archive::detail::pointer_oserializer::save_object_ptr(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:206) ==583660== by 0xE370389: ??? (in /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0) ==583660== { Memcheck:Value8 obj:/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30 fun:_ZNKSt7num_putIcSt19ostreambuf_iteratorIcSt11char_traitsIcEEE13_M_insert_intImEES3_S3_RSt8ios_basecT_ fun:_ZNSo9_M_insertImEERSoT_ fun:_ZN5boost7archive21basic_text_oprimitiveISoE9save_implIjEEvRKT_RN4mpl_5bool_ILb0EEE fun:_ZN5boost7archive21basic_text_oprimitiveISoE4saveIjEEvRKT_ fun:_ZN5boost7archive18text_oarchive_implINS0_13text_oarchiveEE4saveIjEEvRKT_ fun:_ZN5boost7archive11save_access14save_primitiveINS0_13text_oarchiveEjEEvRT_RKT0_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE14save_primitive6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEKjEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsIjEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanIjEERS3_RKT_ fun:_ZN16AbstractSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE16AbstractSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK16AbstractSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI16AbstractSrnModelEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanI16AbstractSrnModelEERS3_RKT_ fun:_ZN12CellSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE12CellSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE12CellSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE12CellSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE12CellSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI12CellSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI12CellSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK12CellSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK12CellSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK12CellSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI12CellSrnModelEERS3_RKT_ fun:_ZN5boost13serialization4saveINS_7archive13text_oarchiveE12CellSrnModelEEvRT_RKNS0_3nvpIT0_EEj fun:_ZN5boost13serialization10free_saverINS_7archive13text_oarchiveENS0_3nvpI12CellSrnModelEEE6invokeERS3_RKS6_j fun:_ZN5boost13serialization10split_freeINS_7archive13text_oarchiveENS0_3nvpI12CellSrnModelEEEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE12CellSrnModelEEvRT_RNS0_3nvpIT0_EEj fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveENS0_3nvpI12CellSrnModelEEEEvRT_RT0_j fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE9save_only6invokeINS_13serialization3nvpI12CellSrnModelEEEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeINS_13serialization3nvpI12CellSrnModelEEEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEKNS_13serialization3nvpI12CellSrnModelEEEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIKNS_13serialization3nvpI12CellSrnModelEEEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIKNS_13serialization3nvpI12CellSrnModelEEEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsINS_13serialization3nvpI12CellSrnModelEEEERS3_RKT_ fun:_ZNK5boost7archive6detail19pointer_oserializerINS0_13text_oarchiveE12CellSrnModelE15save_object_ptrERNS1_14basic_oarchiveEPKv obj:/usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0 } ==583660== Conditional jump or move depends on uninitialised value(s) ==583660== at 0xE4E782D: ??? (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==583660== by 0xE4E7F99: std::ostreambuf_iterator > std::num_put > >::_M_insert_int(std::ostreambuf_iterator >, std::ios_base&, char, unsigned long) const (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==583660== by 0xE4F6399: std::ostream& std::ostream::_M_insert(unsigned long) (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==583660== by 0x155DF0: void boost::archive::basic_text_oprimitive::save_impl(unsigned int const&, mpl_::bool_&) (basic_text_oprimitive.hpp:130) ==583660== by 0x1555D1: void boost::archive::basic_text_oprimitive::save(unsigned int const&) (basic_text_oprimitive.hpp:180) ==583660== by 0x1552C6: void boost::archive::text_oarchive_impl::save(unsigned int const&) (text_oarchive.hpp:65) ==583660== by 0x9AEEF99: void boost::archive::save_access::save_primitive(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:93) ==583660== by 0x9AED829: void boost::archive::detail::save_non_pointer_type::save_primitive::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:237) ==583660== by 0x9AEBC7E: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:315) ==583660== by 0x9AE9832: void boost::archive::save(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:539) ==583660== by 0x9AE7A1B: void boost::archive::detail::common_oarchive::save_override(unsigned int const&) (common_oarchive.hpp:71) ==583660== by 0x9AE4CD4: void boost::archive::basic_text_oarchive::save_override(unsigned int const&) (basic_text_oarchive.hpp:83) ==583660== by 0x9AE2EC7: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (unsigned int const&) (interface_oarchive.hpp:70) ==583660== by 0x9AE192B: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(unsigned int const&) (interface_oarchive.hpp:77) ==583660== by 0x9C595ED: void AbstractSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (AbstractSrnModel.hpp:83) ==583660== by 0x9C58772: void boost::serialization::access::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (access.hpp:116) ==583660== by 0x9C5748C: void boost::serialization::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:68) ==583660== by 0x9C56682: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:118) ==583660== by 0x9C55FAD: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==583660== by 0x9C55A3D: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:258) ==583660== by 0x9C55607: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:315) ==583660== by 0x9C551D8: void boost::archive::save(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:539) ==583660== by 0x9C54E77: void boost::archive::detail::common_oarchive::save_override(AbstractSrnModel const&) (common_oarchive.hpp:71) ==583660== by 0x9C54B06: void boost::archive::basic_text_oarchive::save_override(AbstractSrnModel const&) (basic_text_oarchive.hpp:83) ==583660== by 0x9C546E1: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (AbstractSrnModel const&) (interface_oarchive.hpp:70) ==583660== by 0x9C5436B: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(AbstractSrnModel const&) (interface_oarchive.hpp:77) ==583660== by 0x9C5403A: void CellSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (CellSrnModel.hpp:72) ==583660== by 0x9C53C64: void boost::serialization::access::serialize(boost::archive::text_oarchive&, CellSrnModel&, unsigned int) (access.hpp:116) ==583660== by 0x9C535F4: void boost::serialization::serialize(boost::archive::text_oarchive&, CellSrnModel&, unsigned int) (serialization.hpp:68) ==583660== by 0x9C52E44: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, CellSrnModel&, unsigned int) (serialization.hpp:118) ==583660== by 0x9C527CB: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==583660== by 0x9C56A7D: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, CellSrnModel const&) (oserializer.hpp:258) ==583660== by 0x9C56154: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, CellSrnModel const&) (oserializer.hpp:315) ==583660== by 0x9C55B12: void boost::archive::save(boost::archive::text_oarchive&, CellSrnModel const&) (oserializer.hpp:539) ==583660== by 0x9C5569B: void boost::archive::detail::common_oarchive::save_override(CellSrnModel const&) (common_oarchive.hpp:71) ==583660== by 0x9C55256: void boost::archive::basic_text_oarchive::save_override(CellSrnModel const&) (basic_text_oarchive.hpp:83) ==583660== by 0x9C54F2F: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (CellSrnModel const&) (interface_oarchive.hpp:70) ==583660== by 0x9C54B92: void boost::serialization::save(boost::archive::text_oarchive&, boost::serialization::nvp const&, unsigned int) (nvp.hpp:48) ==583660== by 0x9C547C9: boost::serialization::free_saver >::invoke(boost::archive::text_oarchive&, boost::serialization::nvp const&, unsigned int) (split_free.hpp:45) ==583660== by 0x9C54402: void boost::serialization::split_free >(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (split_free.hpp:74) ==583660== by 0x9C54098: void boost::serialization::serialize(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (nvp.hpp:65) ==583660== by 0x9C53CC1: void boost::serialization::serialize_adl >(boost::archive::text_oarchive&, boost::serialization::nvp&, unsigned int) (serialization.hpp:118) ==583660== by 0x9C5362E: void boost::archive::detail::save_non_pointer_type::save_only::invoke >(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:246) ==583660== by 0x9C52E87: void boost::archive::detail::save_non_pointer_type::invoke >(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:315) ==583660== by 0x9C5280D: void boost::archive::save const>(boost::archive::text_oarchive&, boost::serialization::nvp const&) (oserializer.hpp:539) ==583660== by 0x9C5239F: void boost::archive::detail::common_oarchive::save_override const>(boost::serialization::nvp const&) (common_oarchive.hpp:71) ==583660== by 0x9C51DB6: void boost::archive::basic_text_oarchive::save_override const>(boost::serialization::nvp const&) (basic_text_oarchive.hpp:83) ==583660== by 0x9C5162B: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< >(boost::serialization::nvp const&) (interface_oarchive.hpp:70) ==583660== by 0x9C50E2E: boost::archive::detail::pointer_oserializer::save_object_ptr(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:206) ==583660== by 0xE370389: ??? (in /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0) ==583660== { Memcheck:Cond obj:/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30 fun:_ZNKSt7num_putIcSt19ostreambuf_iteratorIcSt11char_traitsIcEEE13_M_insert_intImEES3_S3_RSt8ios_basecT_ fun:_ZNSo9_M_insertImEERSoT_ fun:_ZN5boost7archive21basic_text_oprimitiveISoE9save_implIjEEvRKT_RN4mpl_5bool_ILb0EEE fun:_ZN5boost7archive21basic_text_oprimitiveISoE4saveIjEEvRKT_ fun:_ZN5boost7archive18text_oarchive_implINS0_13text_oarchiveEE4saveIjEEvRKT_ fun:_ZN5boost7archive11save_access14save_primitiveINS0_13text_oarchiveEjEEvRT_RKT0_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE14save_primitive6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEKjEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsIjEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanIjEERS3_RKT_ fun:_ZN16AbstractSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE16AbstractSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK16AbstractSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI16AbstractSrnModelEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanI16AbstractSrnModelEERS3_RKT_ fun:_ZN12CellSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE12CellSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE12CellSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE12CellSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE12CellSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI12CellSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI12CellSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK12CellSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK12CellSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK12CellSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI12CellSrnModelEERS3_RKT_ fun:_ZN5boost13serialization4saveINS_7archive13text_oarchiveE12CellSrnModelEEvRT_RKNS0_3nvpIT0_EEj fun:_ZN5boost13serialization10free_saverINS_7archive13text_oarchiveENS0_3nvpI12CellSrnModelEEE6invokeERS3_RKS6_j fun:_ZN5boost13serialization10split_freeINS_7archive13text_oarchiveENS0_3nvpI12CellSrnModelEEEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE12CellSrnModelEEvRT_RNS0_3nvpIT0_EEj fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveENS0_3nvpI12CellSrnModelEEEEvRT_RT0_j fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE9save_only6invokeINS_13serialization3nvpI12CellSrnModelEEEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeINS_13serialization3nvpI12CellSrnModelEEEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEKNS_13serialization3nvpI12CellSrnModelEEEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIKNS_13serialization3nvpI12CellSrnModelEEEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIKNS_13serialization3nvpI12CellSrnModelEEEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsINS_13serialization3nvpI12CellSrnModelEEEERS3_RKT_ fun:_ZNK5boost7archive6detail19pointer_oserializerINS0_13text_oarchiveE12CellSrnModelE15save_object_ptrERNS1_14basic_oarchiveEPKv obj:/usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0 } ==583660== ==583660== FILE DESCRIPTORS: 9 open (3 std) at exit. ==583660== Open file descriptor 12: ==583660== at 0xEA3D22D: pipe (pipe.c:29) ==583660== by 0x1891307D: ??? ==583660== by 0x13F154CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==583660== by 0x106DB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==583660== by 0x10674D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==583660== by 0xF369D38: PetscInitialize (pinit.c:924) ==583660== by 0xE30058B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==583660== by 0xE3005D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==583660== by 0x13C330: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==583660== by 0x13577F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==583660== by 0x1385A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==583660== by 0x138442: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==583660== by 0x138AD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==583660== by 0x133AB0: main (TestEdgeInteriorSrn.cpp:19) ==583660== ==583660== Open file descriptor 8: /dev/shm/open_mpi.0000 ==583660== at 0xEA41BCC: __open_nocancel (open64_nocancel.c:39) ==583660== by 0xE9C5C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==583660== by 0xE338822: ??? ==583660== by 0xE33896F: ??? ==583660== by 0x13FBA6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==583660== by 0x13FBA938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==583660== by 0x13F70922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==583660== by 0x13F152DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==583660== by 0x106DB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==583660== by 0x10674D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==583660== by 0xF369D38: PetscInitialize (pinit.c:924) ==583660== by 0xE30058B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==583660== by 0xE3005D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==583660== by 0x13C330: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==583660== by 0x13577F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==583660== by 0x1385A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==583660== by 0x138442: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==583660== by 0x138AD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==583660== by 0x133AB0: main (TestEdgeInteriorSrn.cpp:19) ==583660== ==583660== Open file descriptor 116: ==583660== ==583660== ==583660== Open file descriptor 111: ==583660== ==583660== ==583660== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEdgeInteriorSrn_valgrind.txt ==583660== ==583660== ==583660== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==583660== ==583660== ==583660== ==583660== HEAP SUMMARY: ==583660== in use at exit: 700,786 bytes in 9,379 blocks ==583660== total heap usage: 91,661 allocs, 82,282 frees, 1,357,283,360 bytes allocated ==583660== ==583660== 552 bytes in 1 blocks are definitely lost in loss record 41 of 67 ==583660== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==583660== by 0x191E1C13: ??? ==583660== by 0x191E222C: ??? ==583660== by 0x191554B7: ??? ==583660== by 0x1064115A: ompi_proc_complete_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==583660== by 0x106DBA97: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==583660== by 0x10674D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==583660== by 0xF369D38: PetscInitialize (pinit.c:924) ==583660== by 0xE30058B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==583660== by 0xE3005D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==583660== by 0x13C330: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==583660== by 0x13577F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==583660== by 0x1385A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==583660== by 0x138442: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==583660== by 0x138AD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==583660== by 0x133AB0: main (TestEdgeInteriorSrn.cpp:19) ==583660== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* fun:ompi_proc_complete_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==583660== 84,459 (136 direct, 84,323 indirect) bytes in 1 blocks are definitely lost in loss record 64 of 67 ==583660== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==583660== by 0x1A75474E: ??? ==583660== by 0x1A754E0B: ??? ==583660== by 0x1A757F56: ??? ==583660== by 0x1A74D65D: ??? ==583660== by 0x1A74DFA3: ??? ==583660== by 0x14026F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==583660== by 0x14002AE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==583660== by 0x13FB3CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==583660== by 0x13EE0EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==583660== by 0x18913F03: ??? ==583660== by 0x13F154CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==583660== by 0x106DB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==583660== by 0x10674D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==583660== by 0xF369D38: PetscInitialize (pinit.c:924) ==583660== by 0xE30058B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==583660== by 0xE3005D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==583660== by 0x13C330: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==583660== by 0x13577F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==583660== by 0x1385A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==583660== by 0x138442: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==583660== by 0x138AD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==583660== by 0x133AB0: main (TestEdgeInteriorSrn.cpp:19) ==583660== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* obj:* obj:* obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2 fun:hwloc_topology_load fun:opal_hwloc_base_get_topology fun:orte_ess_base_proc_binding obj:* fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==583660== LEAK SUMMARY: ==583660== definitely lost: 688 bytes in 2 blocks ==583660== indirectly lost: 1,760 bytes in 16 blocks ==583660== possibly lost: 0 bytes in 0 blocks ==583660== still reachable: 1,579 bytes in 8 blocks ==583660== suppressed: 696,759 bytes in 9,353 blocks ==583660== Reachable blocks (those to which a pointer was found) are not shown. ==583660== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==583660== ==583660== Use --track-origins=yes to see where uninitialised values come from ==583660== For lists of detected and suppressed errors, rerun with: -s ==583660== ERROR SUMMARY: 11 errors from 7 contexts (suppressed: 32 from 32)