==691755== Memcheck, a memory error detector ==691755== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==691755== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==691755== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestNeumannStimulus -malloc_debug -malloc_dump -memory_info ==691755== Parent PID: 664293 ==691755== ==691755== WARNING: pwritev(vector[...]) is an obsolete suppression line not supported in valgrind 3.15 or later. ==691755== You should replace [...] by a specific index such as [0] or [1] or [2] or similar ==691755== ==691755== Syscall param socketcall.getsockopt(optlen) points to uninitialised byte(s) ==691755== at 0xA90179E: getsockopt_syscall (getsockopt.c:29) ==691755== by 0xA90179E: getsockopt (getsockopt.c:94) ==691755== by 0x14AA2157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==691755== by 0x14AA9A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==691755== by 0x14AB0DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==691755== by 0x149B03C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==691755== by 0x14929E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==691755== by 0x140E8E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==691755== by 0xF8EA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691755== by 0xC002418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691755== by 0xBF9BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691755== by 0xAC90D38: PetscInitialize (pinit.c:924) ==691755== by 0xA1D858B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==691755== by 0xA1D85D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==691755== by 0x12BB50: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==691755== by 0x12549D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==691755== by 0x127A14: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==691755== by 0x127910: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==691755== by 0x127F23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==691755== by 0x123CA0: main (TestNeumannStimulus.cpp:18) ==691755== Address 0x1ffeffdfbc is on thread 1's stack ==691755== in frame #2, created by pmix_ptl_base_make_connection (???:) ==691755== { Memcheck:Param socketcall.getsockopt(optlen) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==691755== Syscall param socketcall.getsockopt(optlen_out) points to uninitialised byte(s) ==691755== at 0xA90179E: getsockopt_syscall (getsockopt.c:29) ==691755== by 0xA90179E: getsockopt (getsockopt.c:94) ==691755== by 0x14AA2157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==691755== by 0x14AA9A1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==691755== by 0x14AB0DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==691755== by 0x149B03C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==691755== by 0x14929E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==691755== by 0x140E8E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==691755== by 0xF8EA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691755== by 0xC002418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691755== by 0xBF9BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691755== by 0xAC90D38: PetscInitialize (pinit.c:924) ==691755== by 0xA1D858B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==691755== by 0xA1D85D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==691755== by 0x12BB50: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==691755== by 0x12549D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==691755== by 0x127A14: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==691755== by 0x127910: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==691755== by 0x127F23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==691755== by 0x123CA0: main (TestNeumannStimulus.cpp:18) ==691755== Address 0x1ffeffdfbc is on thread 1's stack ==691755== in frame #2, created by pmix_ptl_base_make_connection (???:) ==691755== { Memcheck:Param socketcall.getsockopt(optlen_out) fun:getsockopt_syscall fun:getsockopt fun:pmix_ptl_base_set_timeout fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==691755== Syscall param setsockopt(optlen) contains uninitialised byte(s) ==691755== at 0xA901C7E: setsockopt_syscall (setsockopt.c:29) ==691755== by 0xA901C7E: setsockopt (setsockopt.c:95) ==691755== by 0x14AA9BA9: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==691755== by 0x14AB0DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==691755== by 0x149B03C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2) ==691755== by 0x14929E4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so) ==691755== by 0x140E8E6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so) ==691755== by 0xF8EA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691755== by 0xC002418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691755== by 0xBF9BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691755== by 0xAC90D38: PetscInitialize (pinit.c:924) ==691755== by 0xA1D858B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==691755== by 0xA1D85D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==691755== by 0x12BB50: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==691755== by 0x12549D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==691755== by 0x127A14: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==691755== by 0x127910: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==691755== by 0x127F23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==691755== by 0x123CA0: main (TestNeumannStimulus.cpp:18) ==691755== { Memcheck:Param setsockopt(optlen) fun:setsockopt_syscall fun:setsockopt fun:pmix_ptl_base_make_connection obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2 fun:PMIx_Init fun:ext3x_client_init obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==691755== Syscall param pwrite64(buf) points to uninitialised byte(s) ==691755== at 0xA8EC9EF: __libc_pwrite64 (pwrite64.c:25) ==691755== by 0xA8EC9EF: pwrite (pwrite64.c:23) ==691755== by 0x179F59D2: mca_fbtl_posix_pwritev (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_fbtl_posix.so) ==691755== by 0x179D5419: mca_common_ompio_file_write (in /usr/lib/x86_64-linux-gnu/libmca_common_ompio.so.41.29.2) ==691755== by 0x179D579A: mca_common_ompio_file_write_at (in /usr/lib/x86_64-linux-gnu/libmca_common_ompio.so.41.29.2) ==691755== by 0x179A489A: mca_io_ompio_file_write_at (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_io_ompio.so) ==691755== by 0xBF8F6A7: PMPI_File_write_at (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691755== by 0xC871FEB: ??? (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC6B14ED: H5FD_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC694313: H5F__accum_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC78F442: H5PB_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC69BDEA: H5F_block_write (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC625E98: H5C__flush_single_entry (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC8653F9: H5C_apply_candidate_list (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC8669CA: H5AC__run_sync_point (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC86747E: H5AC__flush_entries (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC60254C: H5AC_flush (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC69A936: ??? (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC69B3FE: H5F__dest (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC69EBB2: H5F_try_close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC69EEFB: H5F__close_cb (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC70E51F: H5I_dec_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC70E5EA: H5I_dec_app_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC69B831: H5F__close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC690881: H5Fclose (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC545967: Hdf5DataWriter::Close() (Hdf5DataWriter.cpp:1100) ==691755== by 0xC540647: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:273) ==691755== by 0xC5406ED: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:283) ==691755== by 0x685835B: AbstractCardiacProblem<1u, 1u, 1u>::CloseFilesAndPostProcess() (AbstractCardiacProblem.cpp:597) ==691755== by 0x6857EFB: AbstractCardiacProblem<1u, 1u, 1u>::Solve() (AbstractCardiacProblem.cpp:582) ==691755== by 0x12C059: TestNeumannStimulus::TestMonodomainConstantStimulus() (TestNeumannStimulus.hpp:103) ==691755== by 0x12CEFE: TestDescription_TestNeumannStimulus_TestMonodomainConstantStimulus::runTest() (TestNeumannStimulus.cpp:30) ==691755== by 0x124CD4: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==691755== by 0x127CC2: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==691755== by 0x127BA7: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==691755== by 0x127A4D: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==691755== by 0x127910: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==691755== by 0x127F23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==691755== by 0x123CA0: main (TestNeumannStimulus.cpp:18) ==691755== Address 0x15ec16ee is 62 bytes inside a block of size 320 alloc'd ==691755== at 0x4848899: malloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==691755== by 0xC625E26: H5C__flush_single_entry (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC8653F9: H5C_apply_candidate_list (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC8669CA: H5AC__run_sync_point (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC86747E: H5AC__flush_entries (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC60254C: H5AC_flush (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC69A936: ??? (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC69B3FE: H5F__dest (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC69EBB2: H5F_try_close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC69EEFB: H5F__close_cb (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC70E51F: H5I_dec_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC70E5EA: H5I_dec_app_ref (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC69B831: H5F__close (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC690881: H5Fclose (in /usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0) ==691755== by 0xC545967: Hdf5DataWriter::Close() (Hdf5DataWriter.cpp:1100) ==691755== by 0xC540647: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:273) ==691755== by 0xC5406ED: Hdf5DataWriter::~Hdf5DataWriter() (Hdf5DataWriter.cpp:283) ==691755== by 0x685835B: AbstractCardiacProblem<1u, 1u, 1u>::CloseFilesAndPostProcess() (AbstractCardiacProblem.cpp:597) ==691755== by 0x6857EFB: AbstractCardiacProblem<1u, 1u, 1u>::Solve() (AbstractCardiacProblem.cpp:582) ==691755== by 0x12C059: TestNeumannStimulus::TestMonodomainConstantStimulus() (TestNeumannStimulus.hpp:103) ==691755== by 0x12CEFE: TestDescription_TestNeumannStimulus_TestMonodomainConstantStimulus::runTest() (TestNeumannStimulus.cpp:30) ==691755== by 0x124CD4: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==691755== by 0x127CC2: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==691755== by 0x127BA7: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==691755== by 0x127A4D: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==691755== by 0x127910: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==691755== by 0x127F23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==691755== by 0x123CA0: main (TestNeumannStimulus.cpp:18) ==691755== { Memcheck:Param pwrite64(buf) fun:__libc_pwrite64 fun:pwrite fun:mca_fbtl_posix_pwritev fun:mca_common_ompio_file_write fun:mca_common_ompio_file_write_at fun:mca_io_ompio_file_write_at fun:PMPI_File_write_at obj:/usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0 fun:H5FD_write fun:H5F__accum_write fun:H5PB_write fun:H5F_block_write fun:H5C__flush_single_entry fun:H5C_apply_candidate_list fun:H5AC__run_sync_point fun:H5AC__flush_entries fun:H5AC_flush obj:/usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so.103.3.0 fun:H5F__dest fun:H5F_try_close fun:H5F__close_cb fun:H5I_dec_ref fun:H5I_dec_app_ref fun:H5F__close fun:H5Fclose fun:_ZN14Hdf5DataWriter5CloseEv fun:_ZN14Hdf5DataWriterD1Ev fun:_ZN14Hdf5DataWriterD0Ev fun:_ZN22AbstractCardiacProblemILj1ELj1ELj1EE24CloseFilesAndPostProcessEv fun:_ZN22AbstractCardiacProblemILj1ELj1ELj1EE5SolveEv fun:_ZN19TestNeumannStimulus30TestMonodomainConstantStimulusEv fun:_ZN66TestDescription_TestNeumannStimulus_TestMonodomainConstantStimulus7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==691755== ==691755== FILE DESCRIPTORS: 9 open (3 std) at exit. ==691755== Open file descriptor 12: ==691755== at 0xA8EF22D: pipe (pipe.c:29) ==691755== by 0x140E907D: ??? ==691755== by 0xF8EA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691755== by 0xC002418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691755== by 0xBF9BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691755== by 0xAC90D38: PetscInitialize (pinit.c:924) ==691755== by 0xA1D858B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==691755== by 0xA1D85D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==691755== by 0x12BB50: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==691755== by 0x12549D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==691755== by 0x127A14: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==691755== by 0x127910: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==691755== by 0x127F23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==691755== by 0x123CA0: main (TestNeumannStimulus.cpp:18) ==691755== ==691755== Open file descriptor 8: /dev/shm/open_mpi.0000 ==691755== at 0xA8F3BCC: __open_nocancel (open64_nocancel.c:39) ==691755== by 0xA877C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==691755== by 0xA210822: ??? ==691755== by 0xA21096F: ??? ==691755== by 0xF98F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==691755== by 0xF98F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==691755== by 0xF945922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==691755== by 0xF8EA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691755== by 0xC002418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691755== by 0xBF9BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691755== by 0xAC90D38: PetscInitialize (pinit.c:924) ==691755== by 0xA1D858B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==691755== by 0xA1D85D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==691755== by 0x12BB50: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==691755== by 0x12549D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==691755== by 0x127A14: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==691755== by 0x127910: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==691755== by 0x127F23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==691755== by 0x123CA0: main (TestNeumannStimulus.cpp:18) ==691755== ==691755== Open file descriptor 116: ==691755== ==691755== ==691755== Open file descriptor 111: ==691755== ==691755== ==691755== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNeumannStimulus_valgrind.txt ==691755== ==691755== ==691755== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==691755== ==691755== ==691755== ==691755== HEAP SUMMARY: ==691755== in use at exit: 701,234 bytes in 9,387 blocks ==691755== total heap usage: 102,730 allocs, 93,343 frees, 1,365,809,006 bytes allocated ==691755== ==691755== 552 bytes in 1 blocks are definitely lost in loss record 43 of 69 ==691755== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==691755== by 0x149B7C13: ??? ==691755== by 0x149B822C: ??? ==691755== by 0x1492B4B7: ??? ==691755== by 0xBF6815A: ompi_proc_complete_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691755== by 0xC002A97: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691755== by 0xBF9BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691755== by 0xAC90D38: PetscInitialize (pinit.c:924) ==691755== by 0xA1D858B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==691755== by 0xA1D85D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==691755== by 0x12BB50: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==691755== by 0x12549D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==691755== by 0x127A14: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==691755== by 0x127910: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==691755== by 0x127F23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==691755== by 0x123CA0: main (TestNeumannStimulus.cpp:18) ==691755== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* fun:ompi_proc_complete_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==691755== 84,459 (136 direct, 84,323 indirect) bytes in 1 blocks are definitely lost in loss record 66 of 69 ==691755== at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==691755== by 0x15B2A74E: ??? ==691755== by 0x15B2AE0B: ??? ==691755== by 0x15B2DF56: ??? ==691755== by 0x15B2365D: ??? ==691755== by 0x15B23FA3: ??? ==691755== by 0xF9FDF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==691755== by 0xF9D9AE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==691755== by 0xF988CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==691755== by 0xF8B5EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691755== by 0x140E9F03: ??? ==691755== by 0xF8EA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691755== by 0xC002418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691755== by 0xBF9BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691755== by 0xAC90D38: PetscInitialize (pinit.c:924) ==691755== by 0xA1D858B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==691755== by 0xA1D85D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==691755== by 0x12BB50: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==691755== by 0x12549D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==691755== by 0x127A14: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==691755== by 0x127910: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==691755== by 0x127F23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==691755== by 0x123CA0: main (TestNeumannStimulus.cpp:18) ==691755== { Memcheck:Leak match-leak-kinds: definite fun:calloc obj:* obj:* obj:* obj:* obj:* obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2 fun:hwloc_topology_load fun:opal_hwloc_base_get_topology fun:orte_ess_base_proc_binding obj:* fun:orte_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==691755== LEAK SUMMARY: ==691755== definitely lost: 688 bytes in 2 blocks ==691755== indirectly lost: 1,760 bytes in 16 blocks ==691755== possibly lost: 0 bytes in 0 blocks ==691755== still reachable: 1,531 bytes in 6 blocks ==691755== suppressed: 697,255 bytes in 9,363 blocks ==691755== Reachable blocks (those to which a pointer was found) are not shown. ==691755== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==691755== ==691755== Use --track-origins=yes to see where uninitialised values come from ==691755== For lists of detected and suppressed errors, rerun with: -s ==691755== ERROR SUMMARY: 11 errors from 6 contexts (suppressed: 32 from 32)