==791982== Memcheck, a memory error detector
==791982== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==791982== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==791982== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestMaterialLaws -malloc_debug -malloc_dump -memory_info
==791982== Parent PID: 790921
==791982== 
==791982== WARNING: pwritev(vector[...]) is an obsolete suppression line not supported in valgrind 3.15 or later.
==791982== You should replace [...] by a specific index such as [0] or [1] or [2] or similar
==791982== 
==791982== Syscall param socketcall.getsockopt(optlen) points to uninitialised byte(s)
==791982==    at 0x4F5679E: getsockopt_syscall (getsockopt.c:29)
==791982==    by 0x4F5679E: getsockopt (getsockopt.c:94)
==791982==    by 0x10D96157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==791982==    by 0x10D9DA1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==791982==    by 0x10DA4DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==791982==    by 0x10CA43C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==791982==    by 0x10C1DE4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so)
==791982==    by 0x103DCE6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so)
==791982==    by 0xBD624CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==791982==    by 0x8614418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==791982==    by 0x85ADD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==791982==    by 0x6EFBD38: PetscInitialize (pinit.c:924)
==791982==    by 0x4AA558B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==791982==    by 0x4AA55D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==791982==    by 0x129D22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==791982==    by 0x124DC5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==791982==    by 0x127A14: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==791982==    by 0x1278B4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==791982==    by 0x127F4B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==791982==    by 0x1230F5: main (TestMaterialLaws.cpp:19)
==791982==  Address 0x1ffeffdf9c is on thread 1's stack
==791982==  in frame #2, created by pmix_ptl_base_make_connection (???:)
==791982== 
{
   <insert_a_suppression_name_here>
   Memcheck:Param
   socketcall.getsockopt(optlen)
   fun:getsockopt_syscall
   fun:getsockopt
   fun:pmix_ptl_base_set_timeout
   fun:pmix_ptl_base_make_connection
   obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2
   fun:PMIx_Init
   fun:ext3x_client_init
   obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so
   fun:orte_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==791982== Syscall param socketcall.getsockopt(optlen_out) points to uninitialised byte(s)
==791982==    at 0x4F5679E: getsockopt_syscall (getsockopt.c:29)
==791982==    by 0x4F5679E: getsockopt (getsockopt.c:94)
==791982==    by 0x10D96157: pmix_ptl_base_set_timeout (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==791982==    by 0x10D9DA1A: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==791982==    by 0x10DA4DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==791982==    by 0x10CA43C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==791982==    by 0x10C1DE4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so)
==791982==    by 0x103DCE6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so)
==791982==    by 0xBD624CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==791982==    by 0x8614418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==791982==    by 0x85ADD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==791982==    by 0x6EFBD38: PetscInitialize (pinit.c:924)
==791982==    by 0x4AA558B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==791982==    by 0x4AA55D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==791982==    by 0x129D22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==791982==    by 0x124DC5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==791982==    by 0x127A14: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==791982==    by 0x1278B4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==791982==    by 0x127F4B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==791982==    by 0x1230F5: main (TestMaterialLaws.cpp:19)
==791982==  Address 0x1ffeffdf9c is on thread 1's stack
==791982==  in frame #2, created by pmix_ptl_base_make_connection (???:)
==791982== 
{
   <insert_a_suppression_name_here>
   Memcheck:Param
   socketcall.getsockopt(optlen_out)
   fun:getsockopt_syscall
   fun:getsockopt
   fun:pmix_ptl_base_set_timeout
   fun:pmix_ptl_base_make_connection
   obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2
   fun:PMIx_Init
   fun:ext3x_client_init
   obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so
   fun:orte_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==791982== Syscall param setsockopt(optlen) contains uninitialised byte(s)
==791982==    at 0x4F56C7E: setsockopt_syscall (setsockopt.c:29)
==791982==    by 0x4F56C7E: setsockopt (setsockopt.c:95)
==791982==    by 0x10D9DBA9: pmix_ptl_base_make_connection (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==791982==    by 0x10DA4DF3: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==791982==    by 0x10CA43C1: PMIx_Init (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2)
==791982==    by 0x10C1DE4A: ext3x_client_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so)
==791982==    by 0x103DCE6D: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so)
==791982==    by 0xBD624CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==791982==    by 0x8614418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==791982==    by 0x85ADD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==791982==    by 0x6EFBD38: PetscInitialize (pinit.c:924)
==791982==    by 0x4AA558B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==791982==    by 0x4AA55D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==791982==    by 0x129D22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==791982==    by 0x124DC5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==791982==    by 0x127A14: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==791982==    by 0x1278B4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==791982==    by 0x127F4B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==791982==    by 0x1230F5: main (TestMaterialLaws.cpp:19)
==791982== 
{
   <insert_a_suppression_name_here>
   Memcheck:Param
   setsockopt(optlen)
   fun:setsockopt_syscall
   fun:setsockopt
   fun:pmix_ptl_base_make_connection
   obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.5.2
   fun:PMIx_Init
   fun:ext3x_client_init
   obj:/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_singleton.so
   fun:orte_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==791982== 
==791982== FILE DESCRIPTORS: 9 open (3 std) at exit.
==791982== Open file descriptor 12:
==791982==    at 0x4F4422D: pipe (pipe.c:29)
==791982==    by 0x103DD07D: ???
==791982==    by 0xBD624CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==791982==    by 0x8614418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==791982==    by 0x85ADD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==791982==    by 0x6EFBD38: PetscInitialize (pinit.c:924)
==791982==    by 0x4AA558B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==791982==    by 0x4AA55D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==791982==    by 0x129D22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==791982==    by 0x124DC5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==791982==    by 0x127A14: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==791982==    by 0x1278B4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==791982==    by 0x127F4B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==791982==    by 0x1230F5: main (TestMaterialLaws.cpp:19)
==791982== 
==791982== Open file descriptor 8: /dev/shm/open_mpi.0000
==791982==    at 0x4F48BCC: __open_nocancel (open64_nocancel.c:39)
==791982==    by 0x4ECCC4F: shm_open@@GLIBC_2.34 (shm_open.c:40)
==791982==    by 0x4ADD822: ???
==791982==    by 0x4ADD96F: ???
==791982==    by 0xBE076DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==791982==    by 0xBE07938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==791982==    by 0xBDBD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==791982==    by 0xBD622DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==791982==    by 0x8614418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==791982==    by 0x85ADD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==791982==    by 0x6EFBD38: PetscInitialize (pinit.c:924)
==791982==    by 0x4AA558B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==791982==    by 0x4AA55D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==791982==    by 0x129D22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==791982==    by 0x124DC5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==791982==    by 0x127A14: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==791982==    by 0x1278B4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==791982==    by 0x127F4B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==791982==    by 0x1230F5: main (TestMaterialLaws.cpp:19)
==791982== 
==791982== Open file descriptor 116:
==791982==    <inherited from parent>
==791982== 
==791982== Open file descriptor 111:
==791982==    <inherited from parent>
==791982== 
==791982== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMaterialLaws_valgrind.txt
==791982==    <inherited from parent>
==791982== 
==791982== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==791982==    <inherited from parent>
==791982== 
==791982== 
==791982== HEAP SUMMARY:
==791982==     in use at exit: 700,690 bytes in 9,377 blocks
==791982==   total heap usage: 49,850 allocs, 40,473 frees, 1,353,428,484 bytes allocated
==791982== 
==791982== 552 bytes in 1 blocks are definitely lost in loss record 39 of 62
==791982==    at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==791982==    by 0x10CABC13: ???
==791982==    by 0x10CAC22C: ???
==791982==    by 0x10C1F4B7: ???
==791982==    by 0x857A15A: ompi_proc_complete_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==791982==    by 0x8614A97: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==791982==    by 0x85ADD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==791982==    by 0x6EFBD38: PetscInitialize (pinit.c:924)
==791982==    by 0x4AA558B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==791982==    by 0x4AA55D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==791982==    by 0x129D22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==791982==    by 0x124DC5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==791982==    by 0x127A14: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==791982==    by 0x1278B4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==791982==    by 0x127F4B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==791982==    by 0x1230F5: main (TestMaterialLaws.cpp:19)
==791982== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: definite
   fun:calloc
   obj:*
   obj:*
   obj:*
   fun:ompi_proc_complete_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==791982== 685,280 (136 direct, 685,144 indirect) bytes in 1 blocks are definitely lost in loss record 62 of 62
==791982==    at 0x484DA83: calloc (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==791982==    by 0x11E1E74E: ???
==791982==    by 0x11E1EE0B: ???
==791982==    by 0x11E21F56: ???
==791982==    by 0x11E1765D: ???
==791982==    by 0x11E17FA3: ???
==791982==    by 0xBE73F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==791982==    by 0xBE4FAE8: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==791982==    by 0xBE00CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==791982==    by 0xBD2DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==791982==    by 0x103DDF03: ???
==791982==    by 0xBD624CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==791982==    by 0x8614418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==791982==    by 0x85ADD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==791982==    by 0x6EFBD38: PetscInitialize (pinit.c:924)
==791982==    by 0x4AA558B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==791982==    by 0x4AA55D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==791982==    by 0x129D22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==791982==    by 0x124DC5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==791982==    by 0x127A14: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==791982==    by 0x1278B4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==791982==    by 0x127F4B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==791982==    by 0x1230F5: main (TestMaterialLaws.cpp:19)
==791982== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: definite
   fun:calloc
   obj:*
   obj:*
   obj:*
   obj:*
   obj:*
   obj:/usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2
   fun:hwloc_topology_load
   fun:opal_hwloc_base_get_topology
   fun:orte_ess_base_proc_binding
   obj:*
   fun:orte_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==791982== LEAK SUMMARY:
==791982==    definitely lost: 688 bytes in 2 blocks
==791982==    indirectly lost: 1,760 bytes in 16 blocks
==791982==      possibly lost: 0 bytes in 0 blocks
==791982==    still reachable: 1,531 bytes in 6 blocks
==791982==         suppressed: 696,711 bytes in 9,353 blocks
==791982== Reachable blocks (those to which a pointer was found) are not shown.
==791982== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==791982== 
==791982== Use --track-origins=yes to see where uninitialised values come from
==791982== For lists of detected and suppressed errors, rerun with: -s
==791982== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 29 from 29)