==958967== Memcheck, a memory error detector ==958967== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==958967== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==958967== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==958967== Parent PID: 938885 ==958967== ==958967== ==958967== FILE DESCRIPTORS: 9 open (3 std) at exit. ==958967== Open file descriptor 12: ==958967== at 0xF60022D: pipe (pipe.c:29) ==958967== by 0x193EE07D: ??? ==958967== by 0x149EE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==958967== by 0x1129C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==958967== by 0x11235D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==958967== by 0xFF2CD38: PetscInitialize (pinit.c:924) ==958967== by 0xEDDA58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==958967== by 0xEDDA5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==958967== by 0x24AE22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==958967== by 0x23F9F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==958967== by 0x2441E0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==958967== by 0x244080: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==958967== by 0x244717: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==958967== by 0x23DCE0: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==958967== ==958967== Open file descriptor 8: /dev/shm/open_mpi.0000 ==958967== at 0xF604BCC: __open_nocancel (open64_nocancel.c:39) ==958967== by 0xF588C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==958967== by 0xEE12822: ??? ==958967== by 0xEE1296F: ??? ==958967== by 0x14A956DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==958967== by 0x14A95938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==958967== by 0x14A4B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==958967== by 0x149EE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==958967== by 0x1129C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==958967== by 0x11235D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==958967== by 0xFF2CD38: PetscInitialize (pinit.c:924) ==958967== by 0xEDDA58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==958967== by 0xEDDA5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==958967== by 0x24AE22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==958967== by 0x23F9F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==958967== by 0x2441E0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==958967== by 0x244080: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==958967== by 0x244717: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==958967== by 0x23DCE0: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==958967== ==958967== Open file descriptor 116: ==958967== ==958967== ==958967== Open file descriptor 111: ==958967== ==958967== ==958967== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==958967== ==958967== ==958967== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==958967== ==958967== ==958967== ==958967== HEAP SUMMARY: ==958967== in use at exit: 700,718 bytes in 9,374 blocks ==958967== total heap usage: 6,235,295 allocs, 6,225,921 frees, 2,065,246,397 bytes allocated ==958967== ==958967== LEAK SUMMARY: ==958967== definitely lost: 0 bytes in 0 blocks ==958967== indirectly lost: 0 bytes in 0 blocks ==958967== possibly lost: 0 bytes in 0 blocks ==958967== still reachable: 56 bytes in 3 blocks ==958967== suppressed: 700,662 bytes in 9,371 blocks ==958967== Reachable blocks (those to which a pointer was found) are not shown. ==958967== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==958967== ==958967== For lists of detected and suppressed errors, rerun with: -s ==958967== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)