==961360== Memcheck, a memory error detector ==961360== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==961360== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==961360== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==961360== Parent PID: 938885 ==961360== ==961360== Warning: invalid file descriptor -1 in syscall close() ==961360== ==961360== FILE DESCRIPTORS: 9 open (3 std) at exit. ==961360== Open file descriptor 12: ==961360== at 0xBA4E22D: pipe (pipe.c:29) ==961360== by 0x13CC407D: ??? ==961360== by 0xF9854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==961360== by 0xB33E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==961360== by 0xB2D7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==961360== by 0x9C19D38: PetscInitialize (pinit.c:924) ==961360== by 0x9A8958B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==961360== by 0x9A895D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==961360== by 0x154BCC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==961360== by 0x14A8EF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==961360== by 0x14DB8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==961360== by 0x14DA2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==961360== by 0x14E0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==961360== by 0x148BD0: main (TestMonodomainProblem.cpp:19) ==961360== ==961360== Open file descriptor 8: /dev/shm/open_mpi.0000 ==961360== at 0xBA52BCC: __open_nocancel (open64_nocancel.c:39) ==961360== by 0xB9D6C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==961360== by 0x9AC1822: ??? ==961360== by 0x9AC196F: ??? ==961360== by 0xFA2A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==961360== by 0xFA2A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==961360== by 0xF9E0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==961360== by 0xF9852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==961360== by 0xB33E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==961360== by 0xB2D7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==961360== by 0x9C19D38: PetscInitialize (pinit.c:924) ==961360== by 0x9A8958B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==961360== by 0x9A895D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==961360== by 0x154BCC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==961360== by 0x14A8EF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==961360== by 0x14DB8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==961360== by 0x14DA2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==961360== by 0x14E0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==961360== by 0x148BD0: main (TestMonodomainProblem.cpp:19) ==961360== ==961360== Open file descriptor 116: ==961360== ==961360== ==961360== Open file descriptor 111: ==961360== ==961360== ==961360== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==961360== ==961360== ==961360== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==961360== ==961360== ==961360== ==961360== HEAP SUMMARY: ==961360== in use at exit: 701,166 bytes in 9,383 blocks ==961360== total heap usage: 6,603,270 allocs, 6,593,887 frees, 4,030,770,902 bytes allocated ==961360== ==961360== LEAK SUMMARY: ==961360== definitely lost: 0 bytes in 0 blocks ==961360== indirectly lost: 0 bytes in 0 blocks ==961360== possibly lost: 0 bytes in 0 blocks ==961360== still reachable: 24 bytes in 2 blocks ==961360== suppressed: 701,142 bytes in 9,381 blocks ==961360== Reachable blocks (those to which a pointer was found) are not shown. ==961360== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==961360== ==961360== For lists of detected and suppressed errors, rerun with: -s ==961360== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 125 from 31)