==1021991== Memcheck, a memory error detector ==1021991== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1021991== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1021991== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==1021991== Parent PID: 1001960 ==1021991== ==1021991== ==1021991== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1021991== Open file descriptor 12: ==1021991== at 0xF60022D: pipe (pipe.c:29) ==1021991== by 0x193EE07D: ??? ==1021991== by 0x149EE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1021991== by 0x1129C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1021991== by 0x11235D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1021991== by 0xFF2CD38: PetscInitialize (pinit.c:924) ==1021991== by 0xEDDA58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1021991== by 0xEDDA5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1021991== by 0x24AE22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1021991== by 0x23F9F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1021991== by 0x2441E0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1021991== by 0x244080: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1021991== by 0x244717: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1021991== by 0x23DCE0: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==1021991== ==1021991== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1021991== at 0xF604BCC: __open_nocancel (open64_nocancel.c:39) ==1021991== by 0xF588C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1021991== by 0xEE12822: ??? ==1021991== by 0xEE1296F: ??? ==1021991== by 0x14A956DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1021991== by 0x14A95938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1021991== by 0x14A4B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1021991== by 0x149EE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1021991== by 0x1129C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1021991== by 0x11235D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1021991== by 0xFF2CD38: PetscInitialize (pinit.c:924) ==1021991== by 0xEDDA58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1021991== by 0xEDDA5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1021991== by 0x24AE22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1021991== by 0x23F9F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1021991== by 0x2441E0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1021991== by 0x244080: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1021991== by 0x244717: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1021991== by 0x23DCE0: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==1021991== ==1021991== Open file descriptor 116: ==1021991== ==1021991== ==1021991== Open file descriptor 111: ==1021991== ==1021991== ==1021991== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==1021991== ==1021991== ==1021991== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1021991== ==1021991== ==1021991== ==1021991== HEAP SUMMARY: ==1021991== in use at exit: 700,720 bytes in 9,374 blocks ==1021991== total heap usage: 6,235,295 allocs, 6,225,921 frees, 2,065,249,639 bytes allocated ==1021991== ==1021991== LEAK SUMMARY: ==1021991== definitely lost: 0 bytes in 0 blocks ==1021991== indirectly lost: 0 bytes in 0 blocks ==1021991== possibly lost: 0 bytes in 0 blocks ==1021991== still reachable: 56 bytes in 3 blocks ==1021991== suppressed: 700,664 bytes in 9,371 blocks ==1021991== Reachable blocks (those to which a pointer was found) are not shown. ==1021991== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1021991== ==1021991== For lists of detected and suppressed errors, rerun with: -s ==1021991== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)