==1003705== Memcheck, a memory error detector ==1003705== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1003705== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1003705== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithBuskeUpdate -malloc_debug -malloc_dump -memory_info ==1003705== Parent PID: 1001960 ==1003705== ==1003705== ==1003705== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1003705== Open file descriptor 12: ==1003705== at 0xDC3622D: pipe (pipe.c:29) ==1003705== by 0x17B0E07D: ??? ==1003705== by 0x1310E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1003705== by 0xF8D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1003705== by 0xF86DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1003705== by 0xE562D38: PetscInitialize (pinit.c:924) ==1003705== by 0xD4F958B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1003705== by 0xD4F95D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1003705== by 0x2D9B58: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1003705== by 0x2CFAA1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1003705== by 0x2D3F76: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1003705== by 0x2D3E71: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1003705== by 0x2D4485: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1003705== by 0x2CE260: main (TestNodeBasedCellPopulationWithBuskeUpdate.cpp:18) ==1003705== ==1003705== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1003705== at 0xDC3ABCC: __open_nocancel (open64_nocancel.c:39) ==1003705== by 0xDBBEC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1003705== by 0xD531822: ??? ==1003705== by 0xD53196F: ??? ==1003705== by 0x131B36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1003705== by 0x131B3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1003705== by 0x13169922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1003705== by 0x1310E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1003705== by 0xF8D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1003705== by 0xF86DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1003705== by 0xE562D38: PetscInitialize (pinit.c:924) ==1003705== by 0xD4F958B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1003705== by 0xD4F95D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1003705== by 0x2D9B58: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1003705== by 0x2CFAA1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1003705== by 0x2D3F76: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1003705== by 0x2D3E71: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1003705== by 0x2D4485: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1003705== by 0x2CE260: main (TestNodeBasedCellPopulationWithBuskeUpdate.cpp:18) ==1003705== ==1003705== Open file descriptor 116: ==1003705== ==1003705== ==1003705== Open file descriptor 111: ==1003705== ==1003705== ==1003705== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt ==1003705== ==1003705== ==1003705== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1003705== ==1003705== ==1003705== ==1003705== HEAP SUMMARY: ==1003705== in use at exit: 700,775 bytes in 9,378 blocks ==1003705== total heap usage: 58,176 allocs, 48,798 frees, 1,355,115,681 bytes allocated ==1003705== ==1003705== LEAK SUMMARY: ==1003705== definitely lost: 0 bytes in 0 blocks ==1003705== indirectly lost: 0 bytes in 0 blocks ==1003705== possibly lost: 0 bytes in 0 blocks ==1003705== still reachable: 56 bytes in 3 blocks ==1003705== suppressed: 700,719 bytes in 9,375 blocks ==1003705== Reachable blocks (those to which a pointer was found) are not shown. ==1003705== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1003705== ==1003705== For lists of detected and suppressed errors, rerun with: -s ==1003705== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)