==1004322== Memcheck, a memory error detector ==1004322== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1004322== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1004322== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==1004322== Parent PID: 1001960 ==1004322== ==1004322== ==1004322== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1004322== Open file descriptor 12: ==1004322== at 0xE19B22D: pipe (pipe.c:29) ==1004322== by 0x17B0D07D: ??? ==1004322== by 0x132314CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1004322== by 0xFE37418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1004322== by 0xFDD0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1004322== by 0xEAC7D38: PetscInitialize (pinit.c:924) ==1004322== by 0xD4F958B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1004322== by 0xD4F95D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1004322== by 0x1DFCCE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1004322== by 0x1D7FD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1004322== by 0x1DB8B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1004322== by 0x1DB758: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1004322== by 0x1DBDEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1004322== by 0x1D62C0: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==1004322== ==1004322== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1004322== at 0xE19FBCC: __open_nocancel (open64_nocancel.c:39) ==1004322== by 0xE123C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1004322== by 0xD531822: ??? ==1004322== by 0xD53196F: ??? ==1004322== by 0x132D66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1004322== by 0x132D6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1004322== by 0x1328C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1004322== by 0x132312DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1004322== by 0xFE37418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1004322== by 0xFDD0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1004322== by 0xEAC7D38: PetscInitialize (pinit.c:924) ==1004322== by 0xD4F958B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1004322== by 0xD4F95D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1004322== by 0x1DFCCE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1004322== by 0x1D7FD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1004322== by 0x1DB8B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1004322== by 0x1DB758: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1004322== by 0x1DBDEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1004322== by 0x1D62C0: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==1004322== ==1004322== Open file descriptor 116: ==1004322== ==1004322== ==1004322== Open file descriptor 111: ==1004322== ==1004322== ==1004322== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==1004322== ==1004322== ==1004322== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1004322== ==1004322== ==1004322== ==1004322== HEAP SUMMARY: ==1004322== in use at exit: 700,704 bytes in 9,374 blocks ==1004322== total heap usage: 6,911,695 allocs, 6,902,321 frees, 8,038,668,731 bytes allocated ==1004322== ==1004322== LEAK SUMMARY: ==1004322== definitely lost: 0 bytes in 0 blocks ==1004322== indirectly lost: 0 bytes in 0 blocks ==1004322== possibly lost: 0 bytes in 0 blocks ==1004322== still reachable: 56 bytes in 3 blocks ==1004322== suppressed: 700,648 bytes in 9,371 blocks ==1004322== Reachable blocks (those to which a pointer was found) are not shown. ==1004322== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1004322== ==1004322== For lists of detected and suppressed errors, rerun with: -s ==1004322== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)