==1022427== Memcheck, a memory error detector ==1022427== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1022427== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1022427== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningVertexBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1022427== Parent PID: 1001960 ==1022427== ==1022427== ==1022427== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1022427== Open file descriptor 12: ==1022427== at 0x1098C22D: pipe (pipe.c:29) ==1022427== by 0x193EE07D: ??? ==1022427== by 0x149504CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1022427== by 0x10296418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1022427== by 0x1022FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1022427== by 0xEF06D38: PetscInitialize (pinit.c:924) ==1022427== by 0xEDDA58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1022427== by 0xEDDA5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1022427== by 0x12A553: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1022427== by 0x1246FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1022427== by 0x126B38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1022427== by 0x126A34: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1022427== by 0x127047: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1022427== by 0x122F00: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==1022427== ==1022427== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1022427== at 0x10990BCC: __open_nocancel (open64_nocancel.c:39) ==1022427== by 0x10914C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1022427== by 0x10190822: ??? ==1022427== by 0x1019096F: ??? ==1022427== by 0x149F56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1022427== by 0x149F5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1022427== by 0x149AB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1022427== by 0x149502DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1022427== by 0x10296418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1022427== by 0x1022FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1022427== by 0xEF06D38: PetscInitialize (pinit.c:924) ==1022427== by 0xEDDA58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1022427== by 0xEDDA5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1022427== by 0x12A553: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1022427== by 0x1246FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1022427== by 0x126B38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1022427== by 0x126A34: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1022427== by 0x127047: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1022427== by 0x122F00: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==1022427== ==1022427== Open file descriptor 116: ==1022427== ==1022427== ==1022427== Open file descriptor 111: ==1022427== ==1022427== ==1022427== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt ==1022427== ==1022427== ==1022427== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1022427== ==1022427== ==1022427== ==1022427== HEAP SUMMARY: ==1022427== in use at exit: 700,871 bytes in 9,379 blocks ==1022427== total heap usage: 1,447,132 allocs, 1,437,753 frees, 1,464,694,708 bytes allocated ==1022427== ==1022427== LEAK SUMMARY: ==1022427== definitely lost: 0 bytes in 0 blocks ==1022427== indirectly lost: 0 bytes in 0 blocks ==1022427== possibly lost: 0 bytes in 0 blocks ==1022427== still reachable: 136 bytes in 4 blocks ==1022427== suppressed: 700,735 bytes in 9,375 blocks ==1022427== Reachable blocks (those to which a pointer was found) are not shown. ==1022427== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1022427== ==1022427== For lists of detected and suppressed errors, rerun with: -s ==1022427== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)