==1112720== Memcheck, a memory error detector ==1112720== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1112720== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1112720== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==1112720== Parent PID: 1110851 ==1112720== ==1112720== ==1112720== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1112720== Open file descriptor 12: ==1112720== at 0xF1D422D: pipe (pipe.c:29) ==1112720== by 0x17B0C07D: ??? ==1112720== by 0x130704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1112720== by 0xE9F7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1112720== by 0xE990D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1112720== by 0xD687D38: PetscInitialize (pinit.c:924) ==1112720== by 0xD4F958B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1112720== by 0xD4F95D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1112720== by 0x20FC3D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1112720== by 0x208521: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1112720== by 0x20B980: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1112720== by 0x20B87C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1112720== by 0x20BE8F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1112720== by 0x206CE0: main (TestOffLatticeSimulation3d.cpp:18) ==1112720== ==1112720== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1112720== at 0xF1D8BCC: __open_nocancel (open64_nocancel.c:39) ==1112720== by 0xF15CC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1112720== by 0xD531822: ??? ==1112720== by 0xD53196F: ??? ==1112720== by 0x131156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1112720== by 0x13115938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1112720== by 0x130CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1112720== by 0x130702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1112720== by 0xE9F7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1112720== by 0xE990D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1112720== by 0xD687D38: PetscInitialize (pinit.c:924) ==1112720== by 0xD4F958B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1112720== by 0xD4F95D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1112720== by 0x20FC3D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1112720== by 0x208521: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1112720== by 0x20B980: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1112720== by 0x20B87C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1112720== by 0x20BE8F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1112720== by 0x206CE0: main (TestOffLatticeSimulation3d.cpp:18) ==1112720== ==1112720== Open file descriptor 116: ==1112720== ==1112720== ==1112720== Open file descriptor 111: ==1112720== ==1112720== ==1112720== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==1112720== ==1112720== ==1112720== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1112720== ==1112720== ==1112720== ==1112720== HEAP SUMMARY: ==1112720== in use at exit: 700,775 bytes in 9,378 blocks ==1112720== total heap usage: 850,552 allocs, 841,174 frees, 1,517,565,188 bytes allocated ==1112720== ==1112720== LEAK SUMMARY: ==1112720== definitely lost: 0 bytes in 0 blocks ==1112720== indirectly lost: 0 bytes in 0 blocks ==1112720== possibly lost: 0 bytes in 0 blocks ==1112720== still reachable: 56 bytes in 3 blocks ==1112720== suppressed: 700,719 bytes in 9,375 blocks ==1112720== Reachable blocks (those to which a pointer was found) are not shown. ==1112720== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1112720== ==1112720== For lists of detected and suppressed errors, rerun with: -s ==1112720== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)