==1129339== Memcheck, a memory error detector ==1129339== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1129339== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1129339== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1129339== Parent PID: 1110851 ==1129339== ==1129339== ==1129339== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1129339== Open file descriptor 12: ==1129339== at 0xF19222D: pipe (pipe.c:29) ==1129339== by 0x17B0C07D: ??? ==1129339== by 0x130704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1129339== by 0xE9B5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1129339== by 0xE94ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1129339== by 0xD625D38: PetscInitialize (pinit.c:924) ==1129339== by 0xD4F958B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1129339== by 0xD4F95D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1129339== by 0x13418B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1129339== by 0x12DC6F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1129339== by 0x13048A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1129339== by 0x13032B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1129339== by 0x1309C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1129339== by 0x12BFA0: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==1129339== ==1129339== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1129339== at 0xF196BCC: __open_nocancel (open64_nocancel.c:39) ==1129339== by 0xF11AC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1129339== by 0xE8AF822: ??? ==1129339== by 0xE8AF96F: ??? ==1129339== by 0x131156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1129339== by 0x13115938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1129339== by 0x130CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1129339== by 0x130702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1129339== by 0xE9B5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1129339== by 0xE94ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1129339== by 0xD625D38: PetscInitialize (pinit.c:924) ==1129339== by 0xD4F958B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1129339== by 0xD4F95D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1129339== by 0x13418B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1129339== by 0x12DC6F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1129339== by 0x13048A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1129339== by 0x13032B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1129339== by 0x1309C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1129339== by 0x12BFA0: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==1129339== ==1129339== Open file descriptor 116: ==1129339== ==1129339== ==1129339== Open file descriptor 111: ==1129339== ==1129339== ==1129339== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt ==1129339== ==1129339== ==1129339== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1129339== ==1129339== ==1129339== ==1129339== HEAP SUMMARY: ==1129339== in use at exit: 700,775 bytes in 9,378 blocks ==1129339== total heap usage: 1,269,851 allocs, 1,260,473 frees, 1,406,468,990 bytes allocated ==1129339== ==1129339== LEAK SUMMARY: ==1129339== definitely lost: 0 bytes in 0 blocks ==1129339== indirectly lost: 0 bytes in 0 blocks ==1129339== possibly lost: 0 bytes in 0 blocks ==1129339== still reachable: 56 bytes in 3 blocks ==1129339== suppressed: 700,719 bytes in 9,375 blocks ==1129339== Reachable blocks (those to which a pointer was found) are not shown. ==1129339== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1129339== ==1129339== For lists of detected and suppressed errors, rerun with: -s ==1129339== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)