==1175913== Memcheck, a memory error detector ==1175913== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1175913== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1175913== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==1175913== Parent PID: 1174373 ==1175913== ==1175913== ==1175913== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1175913== Open file descriptor 12: ==1175913== at 0xE49922D: pipe (pipe.c:29) ==1175913== by 0x1890D07D: ??? ==1175913== by 0x12EAE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1175913== by 0xE0E8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1175913== by 0xE081D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1175913== by 0xCD78D38: PetscInitialize (pinit.c:924) ==1175913== by 0xCBEA58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1175913== by 0xCBEA5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1175913== by 0x122005: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1175913== by 0x11D563: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1175913== by 0x11FB0E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1175913== by 0x11FA0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1175913== by 0x12001D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1175913== by 0x11BD65: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==1175913== ==1175913== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1175913== at 0xE49DBCC: __open_nocancel (open64_nocancel.c:39) ==1175913== by 0xE421C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1175913== by 0xCC22822: ??? ==1175913== by 0xCC2296F: ??? ==1175913== by 0x12F536DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1175913== by 0x12F53938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1175913== by 0x12F09922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1175913== by 0x12EAE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1175913== by 0xE0E8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1175913== by 0xE081D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1175913== by 0xCD78D38: PetscInitialize (pinit.c:924) ==1175913== by 0xCBEA58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1175913== by 0xCBEA5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1175913== by 0x122005: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1175913== by 0x11D563: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1175913== by 0x11FB0E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1175913== by 0x11FA0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1175913== by 0x12001D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1175913== by 0x11BD65: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==1175913== ==1175913== Open file descriptor 116: ==1175913== ==1175913== ==1175913== Open file descriptor 111: ==1175913== ==1175913== ==1175913== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==1175913== ==1175913== ==1175913== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1175913== ==1175913== ==1175913== ==1175913== HEAP SUMMARY: ==1175913== in use at exit: 700,743 bytes in 9,377 blocks ==1175913== total heap usage: 167,718 allocs, 158,341 frees, 1,364,594,249 bytes allocated ==1175913== ==1175913== LEAK SUMMARY: ==1175913== definitely lost: 0 bytes in 0 blocks ==1175913== indirectly lost: 0 bytes in 0 blocks ==1175913== possibly lost: 0 bytes in 0 blocks ==1175913== still reachable: 24 bytes in 2 blocks ==1175913== suppressed: 700,719 bytes in 9,375 blocks ==1175913== Reachable blocks (those to which a pointer was found) are not shown. ==1175913== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1175913== ==1175913== For lists of detected and suppressed errors, rerun with: -s ==1175913== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36)