==1175006== Memcheck, a memory error detector
==1175006== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==1175006== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==1175006== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableVertexMeshRosetteMethods -malloc_debug -malloc_dump -memory_info
==1175006== Parent PID: 1174373
==1175006== 
==1175006== 
==1175006== FILE DESCRIPTORS: 9 open (3 std) at exit.
==1175006== Open file descriptor 12:
==1175006==    at 0x7F4622D: pipe (pipe.c:29)
==1175006==    by 0xFE0B07D: ???
==1175006==    by 0xB74E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==1175006==    by 0x7769418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1175006==    by 0x7702D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1175006==    by 0x63F9D38: PetscInitialize (pinit.c:924)
==1175006==    by 0x626958B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==1175006==    by 0x62695D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==1175006==    by 0x12D55B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==1175006==    by 0x126E7F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==1175006==    by 0x129CA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==1175006==    by 0x129B42: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1175006==    by 0x12A1D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1175006==    by 0x1251B0: main (TestMutableVertexMeshRosetteMethods.cpp:19)
==1175006== 
==1175006== Open file descriptor 8: /dev/shm/open_mpi.0000
==1175006==    at 0x7F4ABCC: __open_nocancel (open64_nocancel.c:39)
==1175006==    by 0x7ECEC4F: shm_open@@GLIBC_2.34 (shm_open.c:40)
==1175006==    by 0x62A1822: ???
==1175006==    by 0x62A196F: ???
==1175006==    by 0xB7F36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==1175006==    by 0xB7F3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==1175006==    by 0xB7A9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==1175006==    by 0xB74E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==1175006==    by 0x7769418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1175006==    by 0x7702D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1175006==    by 0x63F9D38: PetscInitialize (pinit.c:924)
==1175006==    by 0x626958B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==1175006==    by 0x62695D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==1175006==    by 0x12D55B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==1175006==    by 0x126E7F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==1175006==    by 0x129CA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==1175006==    by 0x129B42: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1175006==    by 0x12A1D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1175006==    by 0x1251B0: main (TestMutableVertexMeshRosetteMethods.cpp:19)
==1175006== 
==1175006== Open file descriptor 116:
==1175006==    <inherited from parent>
==1175006== 
==1175006== Open file descriptor 111:
==1175006==    <inherited from parent>
==1175006== 
==1175006== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMeshRosetteMethods_valgrind.txt
==1175006==    <inherited from parent>
==1175006== 
==1175006== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==1175006==    <inherited from parent>
==1175006== 
==1175006== 
==1175006== HEAP SUMMARY:
==1175006==     in use at exit: 704,183 bytes in 9,402 blocks
==1175006==   total heap usage: 55,376 allocs, 45,974 frees, 1,353,844,883 bytes allocated
==1175006== 
==1175006== 172 (40 direct, 132 indirect) bytes in 1 blocks are definitely lost in loss record 51 of 84
==1175006==    at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==1175006==    by 0x5BEFBCE: VertexMeshOperationRecorder<2u, 2u>::RecordNewEdgeOperation(VertexElement<2u, 2u>*, unsigned int) (VertexMeshOperationRecorder.cpp:435)
==1175006==    by 0x5B05695: MutableVertexMesh<2u, 2u>::PerformProtorosetteResolution(Node<2u>*) (MutableVertexMesh.cpp:3712)
==1175006==    by 0x136D27: TestMutableVertexMeshRosetteMethods::TestPerformProtorosetteResolution() (TestMutableVertexMeshRosetteMethods.hpp:488)
==1175006==    by 0x13E290: TestDescription_TestMutableVertexMeshRosetteMethods_TestPerformProtorosetteResolution::runTest() (TestMutableVertexMeshRosetteMethods.cpp:55)
==1175006==    by 0x12647A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==1175006==    by 0x129F50: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==1175006==    by 0x129E35: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==1175006==    by 0x129CDB: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==1175006==    by 0x129B42: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1175006==    by 0x12A1D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1175006==    by 0x1251B0: main (TestMutableVertexMeshRosetteMethods.cpp:19)
==1175006== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: definite
   fun:_Znwm
   fun:_ZN27VertexMeshOperationRecorderILj2ELj2EE22RecordNewEdgeOperationEP13VertexElementILj2ELj2EEj
   fun:_ZN17MutableVertexMeshILj2ELj2EE29PerformProtorosetteResolutionEP4NodeILj2EE
   fun:_ZN35TestMutableVertexMeshRosetteMethods33TestPerformProtorosetteResolutionEv
   fun:_ZN85TestDescription_TestMutableVertexMeshRosetteMethods_TestPerformProtorosetteResolution7runTestEv
   fun:_ZN7CxxTest19RealTestDescription3runEv
   fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE
   fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==1175006== 172 (40 direct, 132 indirect) bytes in 1 blocks are definitely lost in loss record 52 of 84
==1175006==    at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==1175006==    by 0x5BEFBCE: VertexMeshOperationRecorder<2u, 2u>::RecordNewEdgeOperation(VertexElement<2u, 2u>*, unsigned int) (VertexMeshOperationRecorder.cpp:435)
==1175006==    by 0x5B0570D: MutableVertexMesh<2u, 2u>::PerformProtorosetteResolution(Node<2u>*) (MutableVertexMesh.cpp:3716)
==1175006==    by 0x136D27: TestMutableVertexMeshRosetteMethods::TestPerformProtorosetteResolution() (TestMutableVertexMeshRosetteMethods.hpp:488)
==1175006==    by 0x13E290: TestDescription_TestMutableVertexMeshRosetteMethods_TestPerformProtorosetteResolution::runTest() (TestMutableVertexMeshRosetteMethods.cpp:55)
==1175006==    by 0x12647A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==1175006==    by 0x129F50: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==1175006==    by 0x129E35: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==1175006==    by 0x129CDB: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==1175006==    by 0x129B42: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1175006==    by 0x12A1D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1175006==    by 0x1251B0: main (TestMutableVertexMeshRosetteMethods.cpp:19)
==1175006== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: definite
   fun:_Znwm
   fun:_ZN27VertexMeshOperationRecorderILj2ELj2EE22RecordNewEdgeOperationEP13VertexElementILj2ELj2EEj
   fun:_ZN17MutableVertexMeshILj2ELj2EE29PerformProtorosetteResolutionEP4NodeILj2EE
   fun:_ZN35TestMutableVertexMeshRosetteMethods33TestPerformProtorosetteResolutionEv
   fun:_ZN85TestDescription_TestMutableVertexMeshRosetteMethods_TestPerformProtorosetteResolution7runTestEv
   fun:_ZN7CxxTest19RealTestDescription3runEv
   fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE
   fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==1175006== 172 (40 direct, 132 indirect) bytes in 1 blocks are definitely lost in loss record 53 of 84
==1175006==    at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==1175006==    by 0x5BEFBCE: VertexMeshOperationRecorder<2u, 2u>::RecordNewEdgeOperation(VertexElement<2u, 2u>*, unsigned int) (VertexMeshOperationRecorder.cpp:435)
==1175006==    by 0x5B062A2: MutableVertexMesh<2u, 2u>::PerformRosetteRankDecrease(Node<2u>*) (MutableVertexMesh.cpp:3892)
==1175006==    by 0x13AC85: TestMutableVertexMeshRosetteMethods::TestPerformRosetteRankDecrease() (TestMutableVertexMeshRosetteMethods.hpp:568)
==1175006==    by 0x13E2FA: TestDescription_TestMutableVertexMeshRosetteMethods_TestPerformRosetteRankDecrease::runTest() (TestMutableVertexMeshRosetteMethods.cpp:61)
==1175006==    by 0x12647A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==1175006==    by 0x129F50: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==1175006==    by 0x129E35: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==1175006==    by 0x129CDB: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==1175006==    by 0x129B42: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1175006==    by 0x12A1D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1175006==    by 0x1251B0: main (TestMutableVertexMeshRosetteMethods.cpp:19)
==1175006== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: definite
   fun:_Znwm
   fun:_ZN27VertexMeshOperationRecorderILj2ELj2EE22RecordNewEdgeOperationEP13VertexElementILj2ELj2EEj
   fun:_ZN17MutableVertexMeshILj2ELj2EE26PerformRosetteRankDecreaseEP4NodeILj2EE
   fun:_ZN35TestMutableVertexMeshRosetteMethods30TestPerformRosetteRankDecreaseEv
   fun:_ZN82TestDescription_TestMutableVertexMeshRosetteMethods_TestPerformRosetteRankDecrease7runTestEv
   fun:_ZN7CxxTest19RealTestDescription3runEv
   fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE
   fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==1175006== 172 (40 direct, 132 indirect) bytes in 1 blocks are definitely lost in loss record 54 of 84
==1175006==    at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==1175006==    by 0x5BEFBCE: VertexMeshOperationRecorder<2u, 2u>::RecordNewEdgeOperation(VertexElement<2u, 2u>*, unsigned int) (VertexMeshOperationRecorder.cpp:435)
==1175006==    by 0x5B06317: MutableVertexMesh<2u, 2u>::PerformRosetteRankDecrease(Node<2u>*) (MutableVertexMesh.cpp:3897)
==1175006==    by 0x13AC85: TestMutableVertexMeshRosetteMethods::TestPerformRosetteRankDecrease() (TestMutableVertexMeshRosetteMethods.hpp:568)
==1175006==    by 0x13E2FA: TestDescription_TestMutableVertexMeshRosetteMethods_TestPerformRosetteRankDecrease::runTest() (TestMutableVertexMeshRosetteMethods.cpp:61)
==1175006==    by 0x12647A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==1175006==    by 0x129F50: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==1175006==    by 0x129E35: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==1175006==    by 0x129CDB: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==1175006==    by 0x129B42: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1175006==    by 0x12A1D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1175006==    by 0x1251B0: main (TestMutableVertexMeshRosetteMethods.cpp:19)
==1175006== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: definite
   fun:_Znwm
   fun:_ZN27VertexMeshOperationRecorderILj2ELj2EE22RecordNewEdgeOperationEP13VertexElementILj2ELj2EEj
   fun:_ZN17MutableVertexMeshILj2ELj2EE26PerformRosetteRankDecreaseEP4NodeILj2EE
   fun:_ZN35TestMutableVertexMeshRosetteMethods30TestPerformRosetteRankDecreaseEv
   fun:_ZN82TestDescription_TestMutableVertexMeshRosetteMethods_TestPerformRosetteRankDecrease7runTestEv
   fun:_ZN7CxxTest19RealTestDescription3runEv
   fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE
   fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==1175006== 296 (80 direct, 216 indirect) bytes in 2 blocks are definitely lost in loss record 57 of 84
==1175006==    at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==1175006==    by 0x5BEE599: VertexMeshOperationRecorder<2u, 2u>::RecordNodeMergeOperation(std::vector<unsigned int, std::allocator<unsigned int> >, VertexElement<2u, 2u>*, std::pair<unsigned int, unsigned int>, bool) (VertexMeshOperationRecorder.cpp:251)
==1175006==    by 0x5B04794: MutableVertexMesh<2u, 2u>::PerformRosetteRankIncrease(Node<2u>*, Node<2u>*) (MutableVertexMesh.cpp:3510)
==1175006==    by 0x135CA1: TestMutableVertexMeshRosetteMethods::TestPerformRosetteRankIncrease() (TestMutableVertexMeshRosetteMethods.hpp:455)
==1175006==    by 0x13E226: TestDescription_TestMutableVertexMeshRosetteMethods_TestPerformRosetteRankIncrease::runTest() (TestMutableVertexMeshRosetteMethods.cpp:49)
==1175006==    by 0x12647A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==1175006==    by 0x129F50: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==1175006==    by 0x129E35: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==1175006==    by 0x129CDB: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==1175006==    by 0x129B42: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1175006==    by 0x12A1D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1175006==    by 0x1251B0: main (TestMutableVertexMeshRosetteMethods.cpp:19)
==1175006== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: definite
   fun:_Znwm
   fun:_ZN27VertexMeshOperationRecorderILj2ELj2EE24RecordNodeMergeOperationESt6vectorIjSaIjEEP13VertexElementILj2ELj2EESt4pairIjjEb
   fun:_ZN17MutableVertexMeshILj2ELj2EE26PerformRosetteRankIncreaseEP4NodeILj2EES3_
   fun:_ZN35TestMutableVertexMeshRosetteMethods30TestPerformRosetteRankIncreaseEv
   fun:_ZN82TestDescription_TestMutableVertexMeshRosetteMethods_TestPerformRosetteRankIncrease7runTestEv
   fun:_ZN7CxxTest19RealTestDescription3runEv
   fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE
   fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==1175006== LEAK SUMMARY:
==1175006==    definitely lost: 240 bytes in 6 blocks
==1175006==    indirectly lost: 744 bytes in 18 blocks
==1175006==      possibly lost: 0 bytes in 0 blocks
==1175006==    still reachable: 2,576 bytes in 3 blocks
==1175006==         suppressed: 700,623 bytes in 9,375 blocks
==1175006== Reachable blocks (those to which a pointer was found) are not shown.
==1175006== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==1175006== 
==1175006== For lists of detected and suppressed errors, rerun with: -s
==1175006== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 35 from 35)