==1258311== Memcheck, a memory error detector ==1258311== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1258311== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1258311== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==1258311== Parent PID: 1235700 ==1258311== ==1258311== Warning: invalid file descriptor -1 in syscall close() ==1258311== ==1258311== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1258311== Open file descriptor 12: ==1258311== at 0xBE7322D: pipe (pipe.c:29) ==1258311== by 0x140E907D: ??? ==1258311== by 0xFDAA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1258311== by 0xB763418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1258311== by 0xB6FCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1258311== by 0xA03ED38: PetscInitialize (pinit.c:924) ==1258311== by 0x9EAE58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1258311== by 0x9EAE5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1258311== by 0x154BCC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1258311== by 0x14A8EF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1258311== by 0x14DB8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1258311== by 0x14DA2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1258311== by 0x14E0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1258311== by 0x148BD0: main (TestMonodomainProblem.cpp:19) ==1258311== ==1258311== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1258311== at 0xBE77BCC: __open_nocancel (open64_nocancel.c:39) ==1258311== by 0xBDFBC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1258311== by 0x9EE6822: ??? ==1258311== by 0x9EE696F: ??? ==1258311== by 0xFE4F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1258311== by 0xFE4F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1258311== by 0xFE05922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1258311== by 0xFDAA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1258311== by 0xB763418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1258311== by 0xB6FCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1258311== by 0xA03ED38: PetscInitialize (pinit.c:924) ==1258311== by 0x9EAE58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1258311== by 0x9EAE5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1258311== by 0x154BCC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1258311== by 0x14A8EF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1258311== by 0x14DB8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1258311== by 0x14DA2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1258311== by 0x14E0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1258311== by 0x148BD0: main (TestMonodomainProblem.cpp:19) ==1258311== ==1258311== Open file descriptor 116: ==1258311== ==1258311== ==1258311== Open file descriptor 111: ==1258311== ==1258311== ==1258311== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==1258311== ==1258311== ==1258311== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1258311== ==1258311== ==1258311== ==1258311== HEAP SUMMARY: ==1258311== in use at exit: 701,168 bytes in 9,383 blocks ==1258311== total heap usage: 6,603,344 allocs, 6,593,961 frees, 4,031,213,240 bytes allocated ==1258311== ==1258311== LEAK SUMMARY: ==1258311== definitely lost: 0 bytes in 0 blocks ==1258311== indirectly lost: 0 bytes in 0 blocks ==1258311== possibly lost: 0 bytes in 0 blocks ==1258311== still reachable: 24 bytes in 2 blocks ==1258311== suppressed: 701,144 bytes in 9,381 blocks ==1258311== Reachable blocks (those to which a pointer was found) are not shown. ==1258311== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1258311== ==1258311== For lists of detected and suppressed errors, rerun with: -s ==1258311== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 127 from 33)