==1314997== Memcheck, a memory error detector ==1314997== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1314997== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1314997== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1314997== Parent PID: 1296556 ==1314997== ==1314997== ==1314997== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1314997== Open file descriptor 12: ==1314997== at 0xEDA622D: pipe (pipe.c:29) ==1314997== by 0x1890E07D: ??? ==1314997== by 0x13F104CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1314997== by 0x106D6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1314997== by 0x1066FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1314997== by 0xF364D38: PetscInitialize (pinit.c:924) ==1314997== by 0xE6AB58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1314997== by 0xE6AB5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1314997== by 0x1261C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1314997== by 0x12041D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1314997== by 0x1228A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1314997== by 0x1227A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1314997== by 0x122DB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1314997== by 0x11EC20: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==1314997== ==1314997== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1314997== at 0xEDAABCC: __open_nocancel (open64_nocancel.c:39) ==1314997== by 0xED2EC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1314997== by 0xE6E3822: ??? ==1314997== by 0xE6E396F: ??? ==1314997== by 0x13FB56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1314997== by 0x13FB5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1314997== by 0x13F6B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1314997== by 0x13F102DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1314997== by 0x106D6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1314997== by 0x1066FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1314997== by 0xF364D38: PetscInitialize (pinit.c:924) ==1314997== by 0xE6AB58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1314997== by 0xE6AB5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1314997== by 0x1261C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1314997== by 0x12041D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1314997== by 0x1228A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1314997== by 0x1227A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1314997== by 0x122DB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1314997== by 0x11EC20: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==1314997== ==1314997== Open file descriptor 116: ==1314997== ==1314997== ==1314997== Open file descriptor 111: ==1314997== ==1314997== ==1314997== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==1314997== ==1314997== ==1314997== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1314997== ==1314997== ==1314997== ==1314997== HEAP SUMMARY: ==1314997== in use at exit: 700,775 bytes in 9,378 blocks ==1314997== total heap usage: 2,084,220 allocs, 2,074,842 frees, 1,689,625,942 bytes allocated ==1314997== ==1314997== LEAK SUMMARY: ==1314997== definitely lost: 0 bytes in 0 blocks ==1314997== indirectly lost: 0 bytes in 0 blocks ==1314997== possibly lost: 0 bytes in 0 blocks ==1314997== still reachable: 56 bytes in 3 blocks ==1314997== suppressed: 700,719 bytes in 9,375 blocks ==1314997== Reachable blocks (those to which a pointer was found) are not shown. ==1314997== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1314997== ==1314997== For lists of detected and suppressed errors, rerun with: -s ==1314997== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 38 from 38)