==1372639== Memcheck, a memory error detector ==1372639== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1372639== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1372639== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info ==1372639== Parent PID: 1372398 ==1372639== ==1372639== ==1372639== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1372639== Open file descriptor 12: ==1372639== at 0x647E22D: pipe (pipe.c:29) ==1372639== by 0xAF5F07D: ??? ==1372639== by 0x8F7F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1372639== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1372639== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1372639== by 0x4ABFD38: PetscInitialize (pinit.c:924) ==1372639== by 0x499358B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1372639== by 0x49935D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1372639== by 0x125392: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1372639== by 0x11F1B5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1372639== by 0x121EAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1372639== by 0x121D4C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1372639== by 0x1223E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1372639== by 0x11D240: main (TestHdf5DataReader.cpp:19) ==1372639== ==1372639== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1372639== at 0x6482BCC: __open_nocancel (open64_nocancel.c:39) ==1372639== by 0x6406C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1372639== by 0x5D49822: ??? ==1372639== by 0x5D4996F: ??? ==1372639== by 0x90246DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1372639== by 0x9024938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1372639== by 0x8FDA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1372639== by 0x8F7F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1372639== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1372639== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1372639== by 0x4ABFD38: PetscInitialize (pinit.c:924) ==1372639== by 0x499358B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1372639== by 0x49935D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1372639== by 0x125392: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1372639== by 0x11F1B5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1372639== by 0x121EAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1372639== by 0x121D4C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1372639== by 0x1223E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1372639== by 0x11D240: main (TestHdf5DataReader.cpp:19) ==1372639== ==1372639== Open file descriptor 116: ==1372639== ==1372639== ==1372639== Open file descriptor 111: ==1372639== ==1372639== ==1372639== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt ==1372639== ==1372639== ==1372639== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1372639== ==1372639== ==1372639== ==1372639== HEAP SUMMARY: ==1372639== in use at exit: 700,775 bytes in 9,387 blocks ==1372639== total heap usage: 60,653 allocs, 51,266 frees, 1,363,741,639 bytes allocated ==1372639== ==1372639== LEAK SUMMARY: ==1372639== definitely lost: 0 bytes in 0 blocks ==1372639== indirectly lost: 0 bytes in 0 blocks ==1372639== possibly lost: 0 bytes in 0 blocks ==1372639== still reachable: 24 bytes in 2 blocks ==1372639== suppressed: 700,751 bytes in 9,385 blocks ==1372639== Reachable blocks (those to which a pointer was found) are not shown. ==1372639== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1372639== ==1372639== For lists of detected and suppressed errors, rerun with: -s ==1372639== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 41 from 35)