==265102== Memcheck, a memory error detector ==265102== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==265102== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==265102== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewSrnModelTutorial -malloc_debug -malloc_dump -memory_info ==265102== Parent PID: 253633 ==265102== ==265102== Use of uninitialised value of size 8 ==265102== at 0xFBF581B: ??? (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==265102== by 0xFBF5F99: std::ostreambuf_iterator > std::num_put > >::_M_insert_int(std::ostreambuf_iterator >, std::ios_base&, char, unsigned long) const (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==265102== by 0xFC04399: std::ostream& std::ostream::_M_insert(unsigned long) (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==265102== by 0x2BE64C: void boost::archive::basic_text_oprimitive::save_impl(unsigned int const&, mpl_::bool_&) (basic_text_oprimitive.hpp:130) ==265102== by 0x2BC5A7: void boost::archive::basic_text_oprimitive::save(unsigned int const&) (basic_text_oprimitive.hpp:180) ==265102== by 0x2BACF6: void boost::archive::text_oarchive_impl::save(unsigned int const&) (text_oarchive.hpp:65) ==265102== by 0x2B9320: void boost::archive::save_access::save_primitive(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:93) ==265102== by 0x2B7A2A: void boost::archive::detail::save_non_pointer_type::save_primitive::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:237) ==265102== by 0x2B6027: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:315) ==265102== by 0x2B3D36: void boost::archive::save(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:539) ==265102== by 0x2B2067: void boost::archive::detail::common_oarchive::save_override(unsigned int const&) (common_oarchive.hpp:71) ==265102== by 0x2AF370: void boost::archive::basic_text_oarchive::save_override(unsigned int const&) (basic_text_oarchive.hpp:83) ==265102== by 0x2AD91D: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (unsigned int const&) (interface_oarchive.hpp:70) ==265102== by 0x2AC24F: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(unsigned int const&) (interface_oarchive.hpp:77) ==265102== by 0x2C0AD5: void AbstractSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (AbstractSrnModel.hpp:83) ==265102== by 0x2BE274: void boost::serialization::access::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (access.hpp:116) ==265102== by 0x2BC170: void boost::serialization::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:68) ==265102== by 0x2BA9E6: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:118) ==265102== by 0x2B90BD: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==265102== by 0x2B785F: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:258) ==265102== by 0x2B5E9D: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:315) ==265102== by 0x2B3CA9: void boost::archive::save(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:539) ==265102== by 0x2B1FAB: void boost::archive::detail::common_oarchive::save_override(AbstractSrnModel const&) (common_oarchive.hpp:71) ==265102== by 0x2AF2C4: void boost::archive::basic_text_oarchive::save_override(AbstractSrnModel const&) (basic_text_oarchive.hpp:83) ==265102== by 0x2AD837: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (AbstractSrnModel const&) (interface_oarchive.hpp:70) ==265102== by 0x2AC18F: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(AbstractSrnModel const&) (interface_oarchive.hpp:77) ==265102== by 0x2AA4BA: void AbstractOdeSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (AbstractOdeSrnModel.hpp:71) ==265102== by 0x2A7472: void boost::serialization::access::serialize(boost::archive::text_oarchive&, AbstractOdeSrnModel&, unsigned int) (access.hpp:116) ==265102== by 0x2A367E: void boost::serialization::serialize(boost::archive::text_oarchive&, AbstractOdeSrnModel&, unsigned int) (serialization.hpp:68) ==265102== by 0x2A09E8: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, AbstractOdeSrnModel&, unsigned int) (serialization.hpp:118) ==265102== by 0x29E7CF: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==265102== by 0x29CC45: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, AbstractOdeSrnModel const&) (oserializer.hpp:258) ==265102== by 0x29B233: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, AbstractOdeSrnModel const&) (oserializer.hpp:315) ==265102== by 0x2996B0: void boost::archive::save(boost::archive::text_oarchive&, AbstractOdeSrnModel const&) (oserializer.hpp:539) ==265102== by 0x297BDF: void boost::archive::detail::common_oarchive::save_override(AbstractOdeSrnModel const&) (common_oarchive.hpp:71) ==265102== by 0x296024: void boost::archive::basic_text_oarchive::save_override(AbstractOdeSrnModel const&) (basic_text_oarchive.hpp:83) ==265102== by 0x29467F: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (AbstractOdeSrnModel const&) (interface_oarchive.hpp:70) ==265102== by 0x2930ED: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(AbstractOdeSrnModel const&) (interface_oarchive.hpp:77) ==265102== by 0x291936: void MySrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (TestCreatingAndUsingANewSrnModelTutorial.hpp:186) ==265102== by 0x28EE6C: void boost::serialization::access::serialize(boost::archive::text_oarchive&, MySrnModel&, unsigned int) (access.hpp:116) ==265102== by 0x28B838: void boost::serialization::serialize(boost::archive::text_oarchive&, MySrnModel&, unsigned int) (serialization.hpp:68) ==265102== by 0x28778C: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, MySrnModel&, unsigned int) (serialization.hpp:118) ==265102== by 0x284E03: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==265102== by 0x2A0A47: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, MySrnModel const&) (oserializer.hpp:258) ==265102== by 0x29E816: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, MySrnModel const&) (oserializer.hpp:315) ==265102== by 0x29CC76: void boost::archive::save(boost::archive::text_oarchive&, MySrnModel const&) (oserializer.hpp:539) ==265102== by 0x29B269: void boost::archive::detail::common_oarchive::save_override(MySrnModel const&) (common_oarchive.hpp:71) ==265102== by 0x2996DA: void boost::archive::basic_text_oarchive::save_override(MySrnModel const&) (basic_text_oarchive.hpp:83) ==265102== by 0x297C2B: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (MySrnModel const&) (interface_oarchive.hpp:70) ==265102== by 0x29605C: void boost::serialization::save(boost::archive::text_oarchive&, boost::serialization::nvp const&, unsigned int) (nvp.hpp:48) ==265102== { Memcheck:Value8 obj:/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30 fun:_ZNKSt7num_putIcSt19ostreambuf_iteratorIcSt11char_traitsIcEEE13_M_insert_intImEES3_S3_RSt8ios_basecT_ fun:_ZNSo9_M_insertImEERSoT_ fun:_ZN5boost7archive21basic_text_oprimitiveISoE9save_implIjEEvRKT_RN4mpl_5bool_ILb0EEE fun:_ZN5boost7archive21basic_text_oprimitiveISoE4saveIjEEvRKT_ fun:_ZN5boost7archive18text_oarchive_implINS0_13text_oarchiveEE4saveIjEEvRKT_ fun:_ZN5boost7archive11save_access14save_primitiveINS0_13text_oarchiveEjEEvRT_RKT0_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE14save_primitive6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEKjEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsIjEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanIjEERS3_RKT_ fun:_ZN16AbstractSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE16AbstractSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK16AbstractSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI16AbstractSrnModelEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanI16AbstractSrnModelEERS3_RKT_ fun:_ZN19AbstractOdeSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE19AbstractOdeSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE19AbstractOdeSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE19AbstractOdeSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE19AbstractOdeSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI19AbstractOdeSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI19AbstractOdeSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK19AbstractOdeSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK19AbstractOdeSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK19AbstractOdeSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI19AbstractOdeSrnModelEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanI19AbstractOdeSrnModelEERS3_RKT_ fun:_ZN10MySrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE10MySrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE10MySrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE10MySrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE10MySrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI10MySrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI10MySrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK10MySrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK10MySrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK10MySrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI10MySrnModelEERS3_RKT_ fun:_ZN5boost13serialization4saveINS_7archive13text_oarchiveE10MySrnModelEEvRT_RKNS0_3nvpIT0_EEj } ==265102== Conditional jump or move depends on uninitialised value(s) ==265102== at 0xFBF582D: ??? (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==265102== by 0xFBF5F99: std::ostreambuf_iterator > std::num_put > >::_M_insert_int(std::ostreambuf_iterator >, std::ios_base&, char, unsigned long) const (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==265102== by 0xFC04399: std::ostream& std::ostream::_M_insert(unsigned long) (in /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30) ==265102== by 0x2BE64C: void boost::archive::basic_text_oprimitive::save_impl(unsigned int const&, mpl_::bool_&) (basic_text_oprimitive.hpp:130) ==265102== by 0x2BC5A7: void boost::archive::basic_text_oprimitive::save(unsigned int const&) (basic_text_oprimitive.hpp:180) ==265102== by 0x2BACF6: void boost::archive::text_oarchive_impl::save(unsigned int const&) (text_oarchive.hpp:65) ==265102== by 0x2B9320: void boost::archive::save_access::save_primitive(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:93) ==265102== by 0x2B7A2A: void boost::archive::detail::save_non_pointer_type::save_primitive::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:237) ==265102== by 0x2B6027: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:315) ==265102== by 0x2B3D36: void boost::archive::save(boost::archive::text_oarchive&, unsigned int const&) (oserializer.hpp:539) ==265102== by 0x2B2067: void boost::archive::detail::common_oarchive::save_override(unsigned int const&) (common_oarchive.hpp:71) ==265102== by 0x2AF370: void boost::archive::basic_text_oarchive::save_override(unsigned int const&) (basic_text_oarchive.hpp:83) ==265102== by 0x2AD91D: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (unsigned int const&) (interface_oarchive.hpp:70) ==265102== by 0x2AC24F: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(unsigned int const&) (interface_oarchive.hpp:77) ==265102== by 0x2C0AD5: void AbstractSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (AbstractSrnModel.hpp:83) ==265102== by 0x2BE274: void boost::serialization::access::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (access.hpp:116) ==265102== by 0x2BC170: void boost::serialization::serialize(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:68) ==265102== by 0x2BA9E6: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, AbstractSrnModel&, unsigned int) (serialization.hpp:118) ==265102== by 0x2B90BD: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==265102== by 0x2B785F: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:258) ==265102== by 0x2B5E9D: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:315) ==265102== by 0x2B3CA9: void boost::archive::save(boost::archive::text_oarchive&, AbstractSrnModel const&) (oserializer.hpp:539) ==265102== by 0x2B1FAB: void boost::archive::detail::common_oarchive::save_override(AbstractSrnModel const&) (common_oarchive.hpp:71) ==265102== by 0x2AF2C4: void boost::archive::basic_text_oarchive::save_override(AbstractSrnModel const&) (basic_text_oarchive.hpp:83) ==265102== by 0x2AD837: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (AbstractSrnModel const&) (interface_oarchive.hpp:70) ==265102== by 0x2AC18F: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(AbstractSrnModel const&) (interface_oarchive.hpp:77) ==265102== by 0x2AA4BA: void AbstractOdeSrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (AbstractOdeSrnModel.hpp:71) ==265102== by 0x2A7472: void boost::serialization::access::serialize(boost::archive::text_oarchive&, AbstractOdeSrnModel&, unsigned int) (access.hpp:116) ==265102== by 0x2A367E: void boost::serialization::serialize(boost::archive::text_oarchive&, AbstractOdeSrnModel&, unsigned int) (serialization.hpp:68) ==265102== by 0x2A09E8: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, AbstractOdeSrnModel&, unsigned int) (serialization.hpp:118) ==265102== by 0x29E7CF: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==265102== by 0x29CC45: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, AbstractOdeSrnModel const&) (oserializer.hpp:258) ==265102== by 0x29B233: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, AbstractOdeSrnModel const&) (oserializer.hpp:315) ==265102== by 0x2996B0: void boost::archive::save(boost::archive::text_oarchive&, AbstractOdeSrnModel const&) (oserializer.hpp:539) ==265102== by 0x297BDF: void boost::archive::detail::common_oarchive::save_override(AbstractOdeSrnModel const&) (common_oarchive.hpp:71) ==265102== by 0x296024: void boost::archive::basic_text_oarchive::save_override(AbstractOdeSrnModel const&) (basic_text_oarchive.hpp:83) ==265102== by 0x29467F: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (AbstractOdeSrnModel const&) (interface_oarchive.hpp:70) ==265102== by 0x2930ED: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator&(AbstractOdeSrnModel const&) (interface_oarchive.hpp:77) ==265102== by 0x291936: void MySrnModel::serialize(boost::archive::text_oarchive&, unsigned int) (TestCreatingAndUsingANewSrnModelTutorial.hpp:186) ==265102== by 0x28EE6C: void boost::serialization::access::serialize(boost::archive::text_oarchive&, MySrnModel&, unsigned int) (access.hpp:116) ==265102== by 0x28B838: void boost::serialization::serialize(boost::archive::text_oarchive&, MySrnModel&, unsigned int) (serialization.hpp:68) ==265102== by 0x28778C: void boost::serialization::serialize_adl(boost::archive::text_oarchive&, MySrnModel&, unsigned int) (serialization.hpp:118) ==265102== by 0x284E03: boost::archive::detail::oserializer::save_object_data(boost::archive::detail::basic_oarchive&, void const*) const (oserializer.hpp:153) ==265102== by 0x2A0A47: void boost::archive::detail::save_non_pointer_type::save_standard::invoke(boost::archive::text_oarchive&, MySrnModel const&) (oserializer.hpp:258) ==265102== by 0x29E816: void boost::archive::detail::save_non_pointer_type::invoke(boost::archive::text_oarchive&, MySrnModel const&) (oserializer.hpp:315) ==265102== by 0x29CC76: void boost::archive::save(boost::archive::text_oarchive&, MySrnModel const&) (oserializer.hpp:539) ==265102== by 0x29B269: void boost::archive::detail::common_oarchive::save_override(MySrnModel const&) (common_oarchive.hpp:71) ==265102== by 0x2996DA: void boost::archive::basic_text_oarchive::save_override(MySrnModel const&) (basic_text_oarchive.hpp:83) ==265102== by 0x297C2B: boost::archive::text_oarchive& boost::archive::detail::interface_oarchive::operator<< (MySrnModel const&) (interface_oarchive.hpp:70) ==265102== by 0x29605C: void boost::serialization::save(boost::archive::text_oarchive&, boost::serialization::nvp const&, unsigned int) (nvp.hpp:48) ==265102== { Memcheck:Cond obj:/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30 fun:_ZNKSt7num_putIcSt19ostreambuf_iteratorIcSt11char_traitsIcEEE13_M_insert_intImEES3_S3_RSt8ios_basecT_ fun:_ZNSo9_M_insertImEERSoT_ fun:_ZN5boost7archive21basic_text_oprimitiveISoE9save_implIjEEvRKT_RN4mpl_5bool_ILb0EEE fun:_ZN5boost7archive21basic_text_oprimitiveISoE4saveIjEEvRKT_ fun:_ZN5boost7archive18text_oarchive_implINS0_13text_oarchiveEE4saveIjEEvRKT_ fun:_ZN5boost7archive11save_access14save_primitiveINS0_13text_oarchiveEjEEvRT_RKT0_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE14save_primitive6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeIjEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEKjEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIKjEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsIjEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanIjEERS3_RKT_ fun:_ZN16AbstractSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE16AbstractSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE16AbstractSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI16AbstractSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK16AbstractSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK16AbstractSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI16AbstractSrnModelEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanI16AbstractSrnModelEERS3_RKT_ fun:_ZN19AbstractOdeSrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE19AbstractOdeSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE19AbstractOdeSrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE19AbstractOdeSrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE19AbstractOdeSrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI19AbstractOdeSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI19AbstractOdeSrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK19AbstractOdeSrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK19AbstractOdeSrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK19AbstractOdeSrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI19AbstractOdeSrnModelEERS3_RKT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEEanI19AbstractOdeSrnModelEERS3_RKT_ fun:_ZN10MySrnModel9serializeIN5boost7archive13text_oarchiveEEEvRT_j fun:_ZN5boost13serialization6access9serializeINS_7archive13text_oarchiveE10MySrnModelEEvRT_RT0_j fun:_ZN5boost13serialization9serializeINS_7archive13text_oarchiveE10MySrnModelEEvRT_RT0_j fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_oarchiveE10MySrnModelEEvRT_RT0_j fun:_ZNK5boost7archive6detail11oserializerINS0_13text_oarchiveE10MySrnModelE16save_object_dataERNS1_14basic_oarchiveEPKv fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE13save_standard6invokeI10MySrnModelEEvRS3_RKT_ fun:_ZN5boost7archive6detail21save_non_pointer_typeINS0_13text_oarchiveEE6invokeI10MySrnModelEEvRS3_RKT_ fun:_ZN5boost7archive4saveINS0_13text_oarchiveEK10MySrnModelEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_oarchiveINS0_13text_oarchiveEE13save_overrideIK10MySrnModelEEvRT_ fun:_ZN5boost7archive19basic_text_oarchiveINS0_13text_oarchiveEE13save_overrideIK10MySrnModelEEvRT_ fun:_ZN5boost7archive6detail18interface_oarchiveINS0_13text_oarchiveEElsI10MySrnModelEERS3_RKT_ fun:_ZN5boost13serialization4saveINS_7archive13text_oarchiveE10MySrnModelEEvRT_RKNS0_3nvpIT0_EEj } ==265102== ==265102== FILE DESCRIPTORS: 9 open (3 std) at exit. ==265102== Open file descriptor 12: ==265102== at 0x1023222D: pipe (pipe.c:29) ==265102== by 0x1891D07D: ??? ==265102== by 0x13ED24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==265102== by 0xFA55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==265102== by 0xF9EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==265102== by 0xE6E5D38: PetscInitialize (pinit.c:924) ==265102== by 0xE55758B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==265102== by 0xE5575D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==265102== by 0x26C2AD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==265102== by 0x263357: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==265102== by 0x268010: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==265102== by 0x267EB1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==265102== by 0x268547: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==265102== by 0x25EE80: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) ==265102== ==265102== Open file descriptor 8: /dev/shm/open_mpi.0000 ==265102== at 0x10236BCC: __open_nocancel (open64_nocancel.c:39) ==265102== by 0x101BAC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==265102== by 0xE58F822: ??? ==265102== by 0xE58F96F: ??? ==265102== by 0x13F776DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==265102== by 0x13F77938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==265102== by 0x13F2D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==265102== by 0x13ED22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==265102== by 0xFA55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==265102== by 0xF9EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==265102== by 0xE6E5D38: PetscInitialize (pinit.c:924) ==265102== by 0xE55758B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==265102== by 0xE5575D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==265102== by 0x26C2AD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==265102== by 0x263357: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==265102== by 0x268010: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==265102== by 0x267EB1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==265102== by 0x268547: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==265102== by 0x25EE80: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) ==265102== ==265102== Open file descriptor 114: ==265102== ==265102== ==265102== Open file descriptor 111: ==265102== ==265102== ==265102== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt ==265102== ==265102== ==265102== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==265102== ==265102== ==265102== ==265102== HEAP SUMMARY: ==265102== in use at exit: 701,954 bytes in 9,402 blocks ==265102== total heap usage: 3,812,330 allocs, 3,802,928 frees, 1,523,678,511 bytes allocated ==265102== ==265102== 484 (80 direct, 404 indirect) bytes in 2 blocks are definitely lost in loss record 50 of 78 ==265102== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==265102== by 0xDEDAC62: VertexMeshOperationRecorder<2u, 2u>::RecordEdgeSplitOperation(VertexElement<2u, 2u>*, unsigned int, double, bool) (VertexMeshOperationRecorder.cpp:281) ==265102== by 0xDDF6C14: MutableVertexMesh<2u, 2u>::DivideElementAlongGivenAxis(VertexElement<2u, 2u>*, boost::numeric::ublas::c_vector, bool) (MutableVertexMesh.cpp:648) ==265102== by 0xA39743A: VertexBasedCellPopulation<2u>::AddCell(boost::shared_ptr, boost::shared_ptr) (VertexBasedCellPopulation.cpp:252) ==265102== by 0xA769595: AbstractCellBasedSimulation<2u, 2u>::DoCellBirth() (AbstractCellBasedSimulation.cpp:144) ==265102== by 0xA7699CE: AbstractCellBasedSimulation<2u, 2u>::UpdateCellPopulation() (AbstractCellBasedSimulation.cpp:614) ==265102== by 0xA76BCAF: AbstractCellBasedSimulation<2u, 2u>::Solve() (AbstractCellBasedSimulation.cpp:457) ==265102== by 0x26F21B: TestCreatingAndUsingANewSrnModelTutorial::TestOffLatticeSimulationWithMySrnModel() (TestCreatingAndUsingANewSrnModelTutorial.hpp:480) ==265102== by 0x26F6EA: TestDescription_TestCreatingAndUsingANewSrnModelTutorial_TestOffLatticeSimulationWithMySrnModel::runTest() (TestCreatingAndUsingANewSrnModelTutorial.cpp:37) ==265102== by 0x262952: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==265102== by 0x2682BE: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==265102== by 0x2681A3: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==265102== by 0x268049: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==265102== by 0x267EB1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==265102== by 0x268547: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==265102== by 0x25EE80: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) ==265102== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN27VertexMeshOperationRecorderILj2ELj2EE24RecordEdgeSplitOperationEP13VertexElementILj2ELj2EEjdb fun:_ZN17MutableVertexMeshILj2ELj2EE27DivideElementAlongGivenAxisEP13VertexElementILj2ELj2EEN5boost7numeric5ublas8c_vectorIdLm2EEEb fun:_ZN25VertexBasedCellPopulationILj2EE7AddCellEN5boost10shared_ptrI4CellEES4_ fun:_ZN27AbstractCellBasedSimulationILj2ELj2EE11DoCellBirthEv fun:_ZN27AbstractCellBasedSimulationILj2ELj2EE20UpdateCellPopulationEv fun:_ZN27AbstractCellBasedSimulationILj2ELj2EE5SolveEv fun:_ZN40TestCreatingAndUsingANewSrnModelTutorial38TestOffLatticeSimulationWithMySrnModelEv fun:_ZN95TestDescription_TestCreatingAndUsingANewSrnModelTutorial_TestOffLatticeSimulationWithMySrnModel7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==265102== 768 (80 direct, 688 indirect) bytes in 2 blocks are definitely lost in loss record 66 of 78 ==265102== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==265102== by 0xDEDBA9E: VertexMeshOperationRecorder<2u, 2u>::RecordCellDivideOperation(std::vector > const&, VertexElement<2u, 2u>*, VertexElement<2u, 2u>*) (VertexMeshOperationRecorder.cpp:411) ==265102== by 0xDDF6B92: MutableVertexMesh<2u, 2u>::DivideElementAlongGivenAxis(VertexElement<2u, 2u>*, boost::numeric::ublas::c_vector, bool) (MutableVertexMesh.cpp:644) ==265102== by 0xA39743A: VertexBasedCellPopulation<2u>::AddCell(boost::shared_ptr, boost::shared_ptr) (VertexBasedCellPopulation.cpp:252) ==265102== by 0xA769595: AbstractCellBasedSimulation<2u, 2u>::DoCellBirth() (AbstractCellBasedSimulation.cpp:144) ==265102== by 0xA7699CE: AbstractCellBasedSimulation<2u, 2u>::UpdateCellPopulation() (AbstractCellBasedSimulation.cpp:614) ==265102== by 0xA76BCAF: AbstractCellBasedSimulation<2u, 2u>::Solve() (AbstractCellBasedSimulation.cpp:457) ==265102== by 0x26F21B: TestCreatingAndUsingANewSrnModelTutorial::TestOffLatticeSimulationWithMySrnModel() (TestCreatingAndUsingANewSrnModelTutorial.hpp:480) ==265102== by 0x26F6EA: TestDescription_TestCreatingAndUsingANewSrnModelTutorial_TestOffLatticeSimulationWithMySrnModel::runTest() (TestCreatingAndUsingANewSrnModelTutorial.cpp:37) ==265102== by 0x262952: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==265102== by 0x2682BE: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==265102== by 0x2681A3: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==265102== by 0x268049: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==265102== by 0x267EB1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==265102== by 0x268547: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==265102== by 0x25EE80: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) ==265102== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN27VertexMeshOperationRecorderILj2ELj2EE25RecordCellDivideOperationERKSt6vectorIjSaIjEEP13VertexElementILj2ELj2EES8_ fun:_ZN17MutableVertexMeshILj2ELj2EE27DivideElementAlongGivenAxisEP13VertexElementILj2ELj2EEN5boost7numeric5ublas8c_vectorIdLm2EEEb fun:_ZN25VertexBasedCellPopulationILj2EE7AddCellEN5boost10shared_ptrI4CellEES4_ fun:_ZN27AbstractCellBasedSimulationILj2ELj2EE11DoCellBirthEv fun:_ZN27AbstractCellBasedSimulationILj2ELj2EE20UpdateCellPopulationEv fun:_ZN27AbstractCellBasedSimulationILj2ELj2EE5SolveEv fun:_ZN40TestCreatingAndUsingANewSrnModelTutorial38TestOffLatticeSimulationWithMySrnModelEv fun:_ZN95TestDescription_TestCreatingAndUsingANewSrnModelTutorial_TestOffLatticeSimulationWithMySrnModel7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==265102== LEAK SUMMARY: ==265102== definitely lost: 160 bytes in 4 blocks ==265102== indirectly lost: 1,092 bytes in 24 blocks ==265102== possibly lost: 0 bytes in 0 blocks ==265102== still reachable: 56 bytes in 3 blocks ==265102== suppressed: 700,646 bytes in 9,371 blocks ==265102== Reachable blocks (those to which a pointer was found) are not shown. ==265102== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==265102== ==265102== Use --track-origins=yes to see where uninitialised values come from ==265102== For lists of detected and suppressed errors, rerun with: -s ==265102== ERROR SUMMARY: 4 errors from 4 contexts (suppressed: 35 from 35)