==253876== Memcheck, a memory error detector ==253876== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==253876== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==253876== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataWriter -malloc_debug -malloc_dump -memory_info ==253876== Parent PID: 253633 ==253876== ==253876== Warning: invalid file descriptor -1 in syscall close() ==253876== ==253876== FILE DESCRIPTORS: 9 open (3 std) at exit. ==253876== Open file descriptor 12: ==253876== at 0x65B522D: pipe (pipe.c:29) ==253876== by 0xAF5F07D: ??? ==253876== by 0x8F7F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==253876== by 0x6206418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==253876== by 0x619FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==253876== by 0x4ABFD38: PetscInitialize (pinit.c:924) ==253876== by 0x499358B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==253876== by 0x49935D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==253876== by 0x126698: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==253876== by 0x11FFCF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==253876== by 0x123098: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==253876== by 0x122F38: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==253876== by 0x1235CF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==253876== by 0x11E300: main (TestHdf5DataWriter.cpp:19) ==253876== ==253876== Open file descriptor 8: /dev/shm/open_mpi.0000 ==253876== at 0x65B9BCC: __open_nocancel (open64_nocancel.c:39) ==253876== by 0x653DC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==253876== by 0x5D49822: ??? ==253876== by 0x5D4996F: ??? ==253876== by 0x90246DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==253876== by 0x9024938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==253876== by 0x8FDA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==253876== by 0x8F7F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==253876== by 0x6206418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==253876== by 0x619FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==253876== by 0x4ABFD38: PetscInitialize (pinit.c:924) ==253876== by 0x499358B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==253876== by 0x49935D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==253876== by 0x126698: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==253876== by 0x11FFCF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==253876== by 0x123098: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==253876== by 0x122F38: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==253876== by 0x1235CF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==253876== by 0x11E300: main (TestHdf5DataWriter.cpp:19) ==253876== ==253876== Open file descriptor 114: ==253876== ==253876== ==253876== Open file descriptor 111: ==253876== ==253876== ==253876== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataWriter_valgrind.txt ==253876== ==253876== ==253876== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==253876== ==253876== ==253876== ==253876== HEAP SUMMARY: ==253876== in use at exit: 700,770 bytes in 9,387 blocks ==253876== total heap usage: 115,889 allocs, 106,502 frees, 1,427,384,796 bytes allocated ==253876== ==253876== LEAK SUMMARY: ==253876== definitely lost: 0 bytes in 0 blocks ==253876== indirectly lost: 0 bytes in 0 blocks ==253876== possibly lost: 0 bytes in 0 blocks ==253876== still reachable: 24 bytes in 2 blocks ==253876== suppressed: 700,746 bytes in 9,385 blocks ==253876== Reachable blocks (those to which a pointer was found) are not shown. ==253876== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==253876== ==253876== For lists of detected and suppressed errors, rerun with: -s ==253876== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 98 from 35)