==276209== Memcheck, a memory error detector ==276209== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==276209== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==276209== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==276209== Parent PID: 253633 ==276209== ==276209== Warning: invalid file descriptor -1 in syscall close() ==276209== ==276209== FILE DESCRIPTORS: 9 open (3 std) at exit. ==276209== Open file descriptor 12: ==276209== at 0xBE8322D: pipe (pipe.c:29) ==276209== by 0x140F807D: ??? ==276209== by 0xFDB94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==276209== by 0xB773418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==276209== by 0xB70CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==276209== by 0xA04ED38: PetscInitialize (pinit.c:924) ==276209== by 0x9EBE58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==276209== by 0x9EBE5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==276209== by 0x154BCC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==276209== by 0x14A8EF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==276209== by 0x14DB8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==276209== by 0x14DA2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==276209== by 0x14E0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==276209== by 0x148BD0: main (TestMonodomainProblem.cpp:19) ==276209== ==276209== Open file descriptor 8: /dev/shm/open_mpi.0000 ==276209== at 0xBE87BCC: __open_nocancel (open64_nocancel.c:39) ==276209== by 0xBE0BC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==276209== by 0x9EF6822: ??? ==276209== by 0x9EF696F: ??? ==276209== by 0xFE5E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==276209== by 0xFE5E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==276209== by 0xFE14922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==276209== by 0xFDB92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==276209== by 0xB773418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==276209== by 0xB70CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==276209== by 0xA04ED38: PetscInitialize (pinit.c:924) ==276209== by 0x9EBE58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==276209== by 0x9EBE5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==276209== by 0x154BCC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==276209== by 0x14A8EF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==276209== by 0x14DB8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==276209== by 0x14DA2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==276209== by 0x14E0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==276209== by 0x148BD0: main (TestMonodomainProblem.cpp:19) ==276209== ==276209== Open file descriptor 114: ==276209== ==276209== ==276209== Open file descriptor 111: ==276209== ==276209== ==276209== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==276209== ==276209== ==276209== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==276209== ==276209== ==276209== ==276209== HEAP SUMMARY: ==276209== in use at exit: 701,166 bytes in 9,383 blocks ==276209== total heap usage: 6,602,555 allocs, 6,593,172 frees, 4,030,874,309 bytes allocated ==276209== ==276209== LEAK SUMMARY: ==276209== definitely lost: 0 bytes in 0 blocks ==276209== indirectly lost: 0 bytes in 0 blocks ==276209== possibly lost: 0 bytes in 0 blocks ==276209== still reachable: 24 bytes in 2 blocks ==276209== suppressed: 701,142 bytes in 9,381 blocks ==276209== Reachable blocks (those to which a pointer was found) are not shown. ==276209== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==276209== ==276209== For lists of detected and suppressed errors, rerun with: -s ==276209== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 126 from 32)