==392831== Memcheck, a memory error detector ==392831== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==392831== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==392831== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==392831== Parent PID: 390691 ==392831== ==392831== ==392831== FILE DESCRIPTORS: 9 open (3 std) at exit. ==392831== Open file descriptor 12: ==392831== at 0xDCDB22D: pipe (pipe.c:29) ==392831== by 0x17B0D07D: ??? ==392831== by 0x1310E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==392831== by 0xF9BB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==392831== by 0xF954D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==392831== by 0xE64BD38: PetscInitialize (pinit.c:924) ==392831== by 0xD4F958B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==392831== by 0xD4F95D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==392831== by 0x13F008: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==392831== by 0x1388FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==392831== by 0x13B254: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==392831== by 0x13B150: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==392831== by 0x13B763: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==392831== by 0x137100: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==392831== ==392831== Open file descriptor 8: /dev/shm/open_mpi.0000 ==392831== at 0xDCDFBCC: __open_nocancel (open64_nocancel.c:39) ==392831== by 0xDC63C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==392831== by 0xD531822: ??? ==392831== by 0xD53196F: ??? ==392831== by 0x131B36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==392831== by 0x131B3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==392831== by 0x13169922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==392831== by 0x1310E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==392831== by 0xF9BB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==392831== by 0xF954D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==392831== by 0xE64BD38: PetscInitialize (pinit.c:924) ==392831== by 0xD4F958B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==392831== by 0xD4F95D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==392831== by 0x13F008: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==392831== by 0x1388FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==392831== by 0x13B254: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==392831== by 0x13B150: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==392831== by 0x13B763: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==392831== by 0x137100: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==392831== ==392831== Open file descriptor 114: ==392831== ==392831== ==392831== Open file descriptor 111: ==392831== ==392831== ==392831== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==392831== ==392831== ==392831== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==392831== ==392831== ==392831== ==392831== HEAP SUMMARY: ==392831== in use at exit: 700,702 bytes in 9,374 blocks ==392831== total heap usage: 6,670,242 allocs, 6,660,868 frees, 9,009,318,942 bytes allocated ==392831== ==392831== LEAK SUMMARY: ==392831== definitely lost: 0 bytes in 0 blocks ==392831== indirectly lost: 0 bytes in 0 blocks ==392831== possibly lost: 0 bytes in 0 blocks ==392831== still reachable: 56 bytes in 3 blocks ==392831== suppressed: 700,646 bytes in 9,371 blocks ==392831== Reachable blocks (those to which a pointer was found) are not shown. ==392831== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==392831== ==392831== For lists of detected and suppressed errors, rerun with: -s ==392831== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)