==438636== Memcheck, a memory error detector ==438636== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==438636== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==438636== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==438636== Parent PID: 437051 ==438636== ==438636== ==438636== FILE DESCRIPTORS: 9 open (3 std) at exit. ==438636== Open file descriptor 12: ==438636== at 0xE47722D: pipe (pipe.c:29) ==438636== by 0x188D607D: ??? ==438636== by 0x12E784CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==438636== by 0xE0C6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==438636== by 0xE05FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==438636== by 0xCD56D38: PetscInitialize (pinit.c:924) ==438636== by 0xCBC858B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==438636== by 0xCBC85D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==438636== by 0x122005: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==438636== by 0x11D563: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==438636== by 0x11FB0E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==438636== by 0x11FA0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==438636== by 0x12001D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==438636== by 0x11BD65: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==438636== ==438636== Open file descriptor 8: /dev/shm/open_mpi.0000 ==438636== at 0xE47BBCC: __open_nocancel (open64_nocancel.c:39) ==438636== by 0xE3FFC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==438636== by 0xCC00822: ??? ==438636== by 0xCC0096F: ??? ==438636== by 0x12F1D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==438636== by 0x12F1D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==438636== by 0x12ED3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==438636== by 0x12E782DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==438636== by 0xE0C6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==438636== by 0xE05FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==438636== by 0xCD56D38: PetscInitialize (pinit.c:924) ==438636== by 0xCBC858B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==438636== by 0xCBC85D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==438636== by 0x122005: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==438636== by 0x11D563: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==438636== by 0x11FB0E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==438636== by 0x11FA0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==438636== by 0x12001D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==438636== by 0x11BD65: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==438636== ==438636== Open file descriptor 114: ==438636== ==438636== ==438636== Open file descriptor 111: ==438636== ==438636== ==438636== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==438636== ==438636== ==438636== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==438636== ==438636== ==438636== ==438636== HEAP SUMMARY: ==438636== in use at exit: 700,738 bytes in 9,377 blocks ==438636== total heap usage: 167,653 allocs, 158,276 frees, 1,364,591,263 bytes allocated ==438636== ==438636== LEAK SUMMARY: ==438636== definitely lost: 0 bytes in 0 blocks ==438636== indirectly lost: 0 bytes in 0 blocks ==438636== possibly lost: 0 bytes in 0 blocks ==438636== still reachable: 24 bytes in 2 blocks ==438636== suppressed: 700,714 bytes in 9,375 blocks ==438636== Reachable blocks (those to which a pointer was found) are not shown. ==438636== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==438636== ==438636== For lists of detected and suppressed errors, rerun with: -s ==438636== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)