==492335== Memcheck, a memory error detector ==492335== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==492335== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==492335== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithParticles -malloc_debug -malloc_dump -memory_info ==492335== Parent PID: 490496 ==492335== ==492335== ==492335== FILE DESCRIPTORS: 9 open (3 std) at exit. ==492335== Open file descriptor 12: ==492335== at 0xEAEB22D: pipe (pipe.c:29) ==492335== by 0x188D707D: ??? ==492335== by 0x13EDC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==492335== by 0x10787418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==492335== by 0x10720D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==492335== by 0xF417D38: PetscInitialize (pinit.c:924) ==492335== by 0xE2C558B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==492335== by 0xE2C55D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==492335== by 0x2F34EC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==492335== by 0x2E8533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==492335== by 0x2ECFBA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==492335== by 0x2ECE5A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==492335== by 0x2ED4F1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==492335== by 0x2E6820: main (TestNodeBasedCellPopulationWithParticles.cpp:19) ==492335== ==492335== Open file descriptor 8: /dev/shm/open_mpi.0000 ==492335== at 0xEAEFBCC: __open_nocancel (open64_nocancel.c:39) ==492335== by 0xEA73C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==492335== by 0xE2FD822: ??? ==492335== by 0xE2FD96F: ??? ==492335== by 0x13F816DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==492335== by 0x13F81938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==492335== by 0x13F37922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==492335== by 0x13EDC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==492335== by 0x10787418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==492335== by 0x10720D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==492335== by 0xF417D38: PetscInitialize (pinit.c:924) ==492335== by 0xE2C558B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==492335== by 0xE2C55D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==492335== by 0x2F34EC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==492335== by 0x2E8533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==492335== by 0x2ECFBA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==492335== by 0x2ECE5A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==492335== by 0x2ED4F1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==492335== by 0x2E6820: main (TestNodeBasedCellPopulationWithParticles.cpp:19) ==492335== ==492335== Open file descriptor 114: ==492335== ==492335== ==492335== Open file descriptor 111: ==492335== ==492335== ==492335== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithParticles_valgrind.txt ==492335== ==492335== ==492335== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==492335== ==492335== ==492335== ==492335== HEAP SUMMARY: ==492335== in use at exit: 700,770 bytes in 9,378 blocks ==492335== total heap usage: 104,987 allocs, 95,609 frees, 1,361,146,496 bytes allocated ==492335== ==492335== LEAK SUMMARY: ==492335== definitely lost: 0 bytes in 0 blocks ==492335== indirectly lost: 0 bytes in 0 blocks ==492335== possibly lost: 0 bytes in 0 blocks ==492335== still reachable: 56 bytes in 3 blocks ==492335== suppressed: 700,714 bytes in 9,375 blocks ==492335== Reachable blocks (those to which a pointer was found) are not shown. ==492335== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==492335== ==492335== For lists of detected and suppressed errors, rerun with: -s ==492335== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)