==560460== Memcheck, a memory error detector ==560460== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==560460== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==560460== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==560460== Parent PID: 537925 ==560460== ==560460== Warning: invalid file descriptor -1 in syscall close() ==560460== ==560460== FILE DESCRIPTORS: 9 open (3 std) at exit. ==560460== Open file descriptor 12: ==560460== at 0xBE5F22D: pipe (pipe.c:29) ==560460== by 0x140D307D: ??? ==560460== by 0xFD944CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==560460== by 0xB74F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==560460== by 0xB6E8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==560460== by 0xA02AD38: PetscInitialize (pinit.c:924) ==560460== by 0x9E9A58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==560460== by 0x9E9A5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==560460== by 0x154BCC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==560460== by 0x14A8EF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==560460== by 0x14DB8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==560460== by 0x14DA2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==560460== by 0x14E0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==560460== by 0x148BD0: main (TestMonodomainProblem.cpp:19) ==560460== ==560460== Open file descriptor 8: /dev/shm/open_mpi.0000 ==560460== at 0xBE63BCC: __open_nocancel (open64_nocancel.c:39) ==560460== by 0xBDE7C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==560460== by 0x9ED2822: ??? ==560460== by 0x9ED296F: ??? ==560460== by 0xFE396DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==560460== by 0xFE39938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==560460== by 0xFDEF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==560460== by 0xFD942DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==560460== by 0xB74F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==560460== by 0xB6E8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==560460== by 0xA02AD38: PetscInitialize (pinit.c:924) ==560460== by 0x9E9A58B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==560460== by 0x9E9A5D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==560460== by 0x154BCC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==560460== by 0x14A8EF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==560460== by 0x14DB8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==560460== by 0x14DA2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==560460== by 0x14E0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==560460== by 0x148BD0: main (TestMonodomainProblem.cpp:19) ==560460== ==560460== Open file descriptor 114: ==560460== ==560460== ==560460== Open file descriptor 111: ==560460== ==560460== ==560460== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==560460== ==560460== ==560460== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==560460== ==560460== ==560460== ==560460== HEAP SUMMARY: ==560460== in use at exit: 701,166 bytes in 9,383 blocks ==560460== total heap usage: 6,602,549 allocs, 6,593,166 frees, 4,030,873,094 bytes allocated ==560460== ==560460== LEAK SUMMARY: ==560460== definitely lost: 0 bytes in 0 blocks ==560460== indirectly lost: 0 bytes in 0 blocks ==560460== possibly lost: 0 bytes in 0 blocks ==560460== still reachable: 24 bytes in 2 blocks ==560460== suppressed: 701,142 bytes in 9,381 blocks ==560460== Reachable blocks (those to which a pointer was found) are not shown. ==560460== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==560460== ==560460== For lists of detected and suppressed errors, rerun with: -s ==560460== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 128 from 34)