==539626== Memcheck, a memory error detector ==539626== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==539626== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==539626== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==539626== Parent PID: 537925 ==539626== ==539626== ==539626== FILE DESCRIPTORS: 9 open (3 std) at exit. ==539626== Open file descriptor 12: ==539626== at 0xEAA322D: pipe (pipe.c:29) ==539626== by 0x188D707D: ??? ==539626== by 0x13EDC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==539626== by 0x106A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==539626== by 0x10639D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==539626== by 0xF32ED38: PetscInitialize (pinit.c:924) ==539626== by 0xE36458B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==539626== by 0xE3645D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==539626== by 0x2F3E54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==539626== by 0x2E9173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==539626== by 0x2EDA8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==539626== by 0x2ED92C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==539626== by 0x2EDFC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==539626== by 0x2E7460: main (TestNodeBasedCellPopulation.cpp:19) ==539626== ==539626== Open file descriptor 8: /dev/shm/open_mpi.0000 ==539626== at 0xEAA7BCC: __open_nocancel (open64_nocancel.c:39) ==539626== by 0xEA2BC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==539626== by 0xE39C822: ??? ==539626== by 0xE39C96F: ??? ==539626== by 0x13F816DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==539626== by 0x13F81938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==539626== by 0x13F37922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==539626== by 0x13EDC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==539626== by 0x106A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==539626== by 0x10639D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==539626== by 0xF32ED38: PetscInitialize (pinit.c:924) ==539626== by 0xE36458B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==539626== by 0xE3645D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==539626== by 0x2F3E54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==539626== by 0x2E9173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==539626== by 0x2EDA8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==539626== by 0x2ED92C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==539626== by 0x2EDFC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==539626== by 0x2E7460: main (TestNodeBasedCellPopulation.cpp:19) ==539626== ==539626== Open file descriptor 114: ==539626== ==539626== ==539626== Open file descriptor 111: ==539626== ==539626== ==539626== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulation_valgrind.txt ==539626== ==539626== ==539626== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==539626== ==539626== ==539626== ==539626== HEAP SUMMARY: ==539626== in use at exit: 700,702 bytes in 9,374 blocks ==539626== total heap usage: 20,193,958 allocs, 20,184,584 frees, 2,577,901,927 bytes allocated ==539626== ==539626== LEAK SUMMARY: ==539626== definitely lost: 0 bytes in 0 blocks ==539626== indirectly lost: 0 bytes in 0 blocks ==539626== possibly lost: 0 bytes in 0 blocks ==539626== still reachable: 56 bytes in 3 blocks ==539626== suppressed: 700,646 bytes in 9,371 blocks ==539626== Reachable blocks (those to which a pointer was found) are not shown. ==539626== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==539626== ==539626== For lists of detected and suppressed errors, rerun with: -s ==539626== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)