==540382== Memcheck, a memory error detector ==540382== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==540382== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==540382== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==540382== Parent PID: 537925 ==540382== ==540382== ==540382== FILE DESCRIPTORS: 9 open (3 std) at exit. ==540382== Open file descriptor 12: ==540382== at 0xEF6722D: pipe (pipe.c:29) ==540382== by 0x188D707D: ??? ==540382== by 0x13FFE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==540382== by 0x10C03418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==540382== by 0x10B9CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==540382== by 0xF893D38: PetscInitialize (pinit.c:924) ==540382== by 0xE2C558B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==540382== by 0xE2C55D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==540382== by 0x1DFCCE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==540382== by 0x1D7FD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==540382== by 0x1DB8B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==540382== by 0x1DB758: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==540382== by 0x1DBDEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==540382== by 0x1D62C0: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==540382== ==540382== Open file descriptor 8: /dev/shm/open_mpi.0000 ==540382== at 0xEF6BBCC: __open_nocancel (open64_nocancel.c:39) ==540382== by 0xEEEFC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==540382== by 0xE2FD822: ??? ==540382== by 0xE2FD96F: ??? ==540382== by 0x140A36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==540382== by 0x140A3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==540382== by 0x14059922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==540382== by 0x13FFE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==540382== by 0x10C03418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==540382== by 0x10B9CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==540382== by 0xF893D38: PetscInitialize (pinit.c:924) ==540382== by 0xE2C558B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==540382== by 0xE2C55D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==540382== by 0x1DFCCE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==540382== by 0x1D7FD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==540382== by 0x1DB8B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==540382== by 0x1DB758: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==540382== by 0x1DBDEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==540382== by 0x1D62C0: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==540382== ==540382== Open file descriptor 114: ==540382== ==540382== ==540382== Open file descriptor 111: ==540382== ==540382== ==540382== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==540382== ==540382== ==540382== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==540382== ==540382== ==540382== ==540382== HEAP SUMMARY: ==540382== in use at exit: 700,702 bytes in 9,374 blocks ==540382== total heap usage: 6,914,807 allocs, 6,905,433 frees, 8,040,381,028 bytes allocated ==540382== ==540382== LEAK SUMMARY: ==540382== definitely lost: 0 bytes in 0 blocks ==540382== indirectly lost: 0 bytes in 0 blocks ==540382== possibly lost: 0 bytes in 0 blocks ==540382== still reachable: 56 bytes in 3 blocks ==540382== suppressed: 700,646 bytes in 9,371 blocks ==540382== Reachable blocks (those to which a pointer was found) are not shown. ==540382== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==540382== ==540382== For lists of detected and suppressed errors, rerun with: -s ==540382== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)