==558398== Memcheck, a memory error detector ==558398== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==558398== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==558398== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==558398== Parent PID: 537925 ==558398== ==558398== ==558398== FILE DESCRIPTORS: 9 open (3 std) at exit. ==558398== Open file descriptor 12: ==558398== at 0x1175822D: pipe (pipe.c:29) ==558398== by 0x1A1BA07D: ??? ==558398== by 0x1571F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==558398== by 0x11062418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==558398== by 0x10FFBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==558398== by 0xFCD2D38: PetscInitialize (pinit.c:924) ==558398== by 0xFBA658B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==558398== by 0xFBA65D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==558398== by 0x12E5E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==558398== by 0x1287FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==558398== by 0x12AC06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==558398== by 0x12AB02: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==558398== by 0x12B115: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==558398== by 0x127000: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==558398== ==558398== Open file descriptor 8: /dev/shm/open_mpi.0000 ==558398== at 0x1175CBCC: __open_nocancel (open64_nocancel.c:39) ==558398== by 0x116E0C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==558398== by 0x10F5C822: ??? ==558398== by 0x10F5C96F: ??? ==558398== by 0x157C46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==558398== by 0x157C4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==558398== by 0x1577A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==558398== by 0x1571F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==558398== by 0x11062418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==558398== by 0x10FFBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==558398== by 0xFCD2D38: PetscInitialize (pinit.c:924) ==558398== by 0xFBA658B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==558398== by 0xFBA65D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==558398== by 0x12E5E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==558398== by 0x1287FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==558398== by 0x12AC06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==558398== by 0x12AB02: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==558398== by 0x12B115: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==558398== by 0x127000: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==558398== ==558398== Open file descriptor 114: ==558398== ==558398== ==558398== Open file descriptor 111: ==558398== ==558398== ==558398== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==558398== ==558398== ==558398== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==558398== ==558398== ==558398== ==558398== HEAP SUMMARY: ==558398== in use at exit: 700,718 bytes in 9,374 blocks ==558398== total heap usage: 16,185,892 allocs, 16,176,518 frees, 2,886,058,609 bytes allocated ==558398== ==558398== LEAK SUMMARY: ==558398== definitely lost: 0 bytes in 0 blocks ==558398== indirectly lost: 0 bytes in 0 blocks ==558398== possibly lost: 0 bytes in 0 blocks ==558398== still reachable: 56 bytes in 3 blocks ==558398== suppressed: 700,662 bytes in 9,371 blocks ==558398== Reachable blocks (those to which a pointer was found) are not shown. ==558398== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==558398== ==558398== For lists of detected and suppressed errors, rerun with: -s ==558398== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)