==584282== Memcheck, a memory error detector ==584282== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==584282== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==584282== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestEdge -malloc_debug -malloc_dump -memory_info ==584282== Parent PID: 583813 ==584282== ==584282== ==584282== FILE DESCRIPTORS: 9 open (3 std) at exit. ==584282== Open file descriptor 12: ==584282== at 0x7E4922D: pipe (pipe.c:29) ==584282== by 0xFDF307D: ??? ==584282== by 0xB7344CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==584282== by 0x7755418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==584282== by 0x76EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==584282== by 0x63E5D38: PetscInitialize (pinit.c:924) ==584282== by 0x625558B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==584282== by 0x62555D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==584282== by 0x16BBE1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==584282== by 0x1648E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==584282== by 0x167D9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==584282== by 0x167C3E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==584282== by 0x1682D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==584282== by 0x162BD0: main (TestEdge.cpp:19) ==584282== ==584282== Open file descriptor 8: /dev/shm/open_mpi.0000 ==584282== at 0x7E4DBCC: __open_nocancel (open64_nocancel.c:39) ==584282== by 0x7DD1C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==584282== by 0x628D822: ??? ==584282== by 0x628D96F: ??? ==584282== by 0xB7D96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==584282== by 0xB7D9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==584282== by 0xB78F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==584282== by 0xB7342DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==584282== by 0x7755418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==584282== by 0x76EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==584282== by 0x63E5D38: PetscInitialize (pinit.c:924) ==584282== by 0x625558B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==584282== by 0x62555D9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==584282== by 0x16BBE1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==584282== by 0x1648E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==584282== by 0x167D9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==584282== by 0x167C3E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==584282== by 0x1682D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==584282== by 0x162BD0: main (TestEdge.cpp:19) ==584282== ==584282== Open file descriptor 114: ==584282== ==584282== ==584282== Open file descriptor 111: ==584282== ==584282== ==584282== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEdge_valgrind.txt ==584282== ==584282== ==584282== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==584282== ==584282== ==584282== ==584282== HEAP SUMMARY: ==584282== in use at exit: 701,026 bytes in 9,379 blocks ==584282== total heap usage: 50,099 allocs, 40,720 frees, 1,353,472,581 bytes allocated ==584282== ==584282== 192 bytes in 1 blocks are definitely lost in loss record 35 of 64 ==584282== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==584282== by 0x1A457A: boost::archive::detail::heap_allocation >::doesnt_have_new_operator::invoke_new() (iserializer.hpp:241) ==584282== by 0x1A4210: boost::archive::detail::heap_allocation >::invoke_new() (iserializer.hpp:255) ==584282== by 0x1A399E: boost::archive::detail::heap_allocation >::heap_allocation() (iserializer.hpp:268) ==584282== by 0x1A2345: boost::archive::detail::pointer_iserializer >::heap_allocation() const (iserializer.hpp:293) ==584282== by 0x62C9830: ??? (in /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0) ==584282== by 0x18B459: void boost::archive::detail::load_pointer_type::invoke*>(boost::archive::text_iarchive&, Node<2u>*&) (iserializer.hpp:541) ==584282== by 0x18AF16: void boost::archive::load*>(boost::archive::text_iarchive&, Node<2u>*&) (iserializer.hpp:624) ==584282== by 0x18AB0D: void boost::archive::detail::common_iarchive::load_override*>(Node<2u>*&) (common_iarchive.hpp:67) ==584282== by 0x18A74A: void boost::archive::basic_text_iarchive::load_override*>(Node<2u>*&) (basic_text_iarchive.hpp:70) ==584282== by 0x18A324: void boost::archive::text_iarchive_impl::load_override*>(Node<2u>*&) (text_iarchive.hpp:82) ==584282== by 0x189D0B: boost::archive::text_iarchive& boost::archive::detail::interface_iarchive::operator>>*>(Node<2u>*&) (interface_iarchive.hpp:68) ==584282== by 0x189779: boost::archive::text_iarchive& boost::archive::detail::interface_iarchive::operator&*>(Node<2u>*&) (interface_iarchive.hpp:75) ==584282== by 0x189071: void boost::serialization::load_construct_data(boost::archive::text_iarchive&, Edge<2u>*, unsigned int) (Edge.hpp:263) ==584282== by 0x188987: void boost::serialization::load_construct_data_adl >(boost::archive::text_iarchive&, Edge<2u>*, unsigned int) (serialization.hpp:140) ==584282== by 0x1881C9: boost::archive::detail::pointer_iserializer >::load_object_ptr(boost::archive::detail::basic_iarchive&, void*, unsigned int) const (iserializer.hpp:340) ==584282== by 0x62C99F4: ??? (in /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0) ==584282== by 0x1854FA: void boost::archive::detail::load_pointer_type::invoke*>(boost::archive::text_iarchive&, Edge<2u>*&) (iserializer.hpp:541) ==584282== by 0x18420E: void boost::archive::load*>(boost::archive::text_iarchive&, Edge<2u>*&) (iserializer.hpp:624) ==584282== by 0x182AF1: void boost::archive::detail::common_iarchive::load_override*>(Edge<2u>*&) (common_iarchive.hpp:67) ==584282== by 0x18055C: void boost::archive::basic_text_iarchive::load_override*>(Edge<2u>*&) (basic_text_iarchive.hpp:70) ==584282== by 0x17D416: void boost::archive::text_iarchive_impl::load_override*>(Edge<2u>*&) (text_iarchive.hpp:82) ==584282== by 0x179E31: boost::archive::text_iarchive& boost::archive::detail::interface_iarchive::operator>>*>(Edge<2u>*&) (interface_iarchive.hpp:68) ==584282== by 0x1730BC: TestEdge::TestArchiveEdge() (TestEdge.hpp:314) ==584282== by 0x17802A: TestDescription_TestEdge_TestArchiveEdge::runTest() (TestEdge.cpp:49) ==584282== by 0x163EDE: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==584282== by 0x16804C: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==584282== by 0x167F31: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==584282== by 0x167DD7: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==584282== by 0x167C3E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==584282== by 0x1682D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==584282== by 0x162BD0: main (TestEdge.cpp:19) ==584282== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN5boost7archive6detail15heap_allocationI4NodeILj2EEE24doesnt_have_new_operator10invoke_newEv fun:_ZN5boost7archive6detail15heap_allocationI4NodeILj2EEE10invoke_newEv fun:_ZN5boost7archive6detail15heap_allocationI4NodeILj2EEEC1Ev fun:_ZNK5boost7archive6detail19pointer_iserializerINS0_13text_iarchiveE4NodeILj2EEE15heap_allocationEv obj:/usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0 fun:_ZN5boost7archive6detail17load_pointer_typeINS0_13text_iarchiveEE6invokeIP4NodeILj2EEEEvRS3_RT_ fun:_ZN5boost7archive4loadINS0_13text_iarchiveEP4NodeILj2EEEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_iarchiveINS0_13text_iarchiveEE13load_overrideIP4NodeILj2EEEEvRT_ fun:_ZN5boost7archive19basic_text_iarchiveINS0_13text_iarchiveEE13load_overrideIP4NodeILj2EEEEvRT_ fun:_ZN5boost7archive18text_iarchive_implINS0_13text_iarchiveEE13load_overrideIP4NodeILj2EEEEvRT_ fun:_ZN5boost7archive6detail18interface_iarchiveINS0_13text_iarchiveEErsIP4NodeILj2EEEERS3_RT_ fun:_ZN5boost7archive6detail18interface_iarchiveINS0_13text_iarchiveEEanIP4NodeILj2EEEERS3_RT_ fun:_ZN5boost13serialization19load_construct_dataINS_7archive13text_iarchiveELj2EEEvRT_P4EdgeIXT0_EEj fun:_ZN5boost13serialization23load_construct_data_adlINS_7archive13text_iarchiveE4EdgeILj2EEEEvRT_PT0_j fun:_ZNK5boost7archive6detail19pointer_iserializerINS0_13text_iarchiveE4EdgeILj2EEE15load_object_ptrERNS1_14basic_iarchiveEPvj obj:/usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0 fun:_ZN5boost7archive6detail17load_pointer_typeINS0_13text_iarchiveEE6invokeIP4EdgeILj2EEEEvRS3_RT_ fun:_ZN5boost7archive4loadINS0_13text_iarchiveEP4EdgeILj2EEEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_iarchiveINS0_13text_iarchiveEE13load_overrideIP4EdgeILj2EEEEvRT_ fun:_ZN5boost7archive19basic_text_iarchiveINS0_13text_iarchiveEE13load_overrideIP4EdgeILj2EEEEvRT_ fun:_ZN5boost7archive18text_iarchive_implINS0_13text_iarchiveEE13load_overrideIP4EdgeILj2EEEEvRT_ fun:_ZN5boost7archive6detail18interface_iarchiveINS0_13text_iarchiveEErsIP4EdgeILj2EEEERS3_RT_ fun:_ZN8TestEdge15TestArchiveEdgeEv fun:_ZN40TestDescription_TestEdge_TestArchiveEdge7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==584282== 192 bytes in 1 blocks are definitely lost in loss record 36 of 64 ==584282== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==584282== by 0x1A457A: boost::archive::detail::heap_allocation >::doesnt_have_new_operator::invoke_new() (iserializer.hpp:241) ==584282== by 0x1A4210: boost::archive::detail::heap_allocation >::invoke_new() (iserializer.hpp:255) ==584282== by 0x1A399E: boost::archive::detail::heap_allocation >::heap_allocation() (iserializer.hpp:268) ==584282== by 0x1A2345: boost::archive::detail::pointer_iserializer >::heap_allocation() const (iserializer.hpp:293) ==584282== by 0x62C9830: ??? (in /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0) ==584282== by 0x18B459: void boost::archive::detail::load_pointer_type::invoke*>(boost::archive::text_iarchive&, Node<2u>*&) (iserializer.hpp:541) ==584282== by 0x18AF16: void boost::archive::load*>(boost::archive::text_iarchive&, Node<2u>*&) (iserializer.hpp:624) ==584282== by 0x18AB0D: void boost::archive::detail::common_iarchive::load_override*>(Node<2u>*&) (common_iarchive.hpp:67) ==584282== by 0x18A74A: void boost::archive::basic_text_iarchive::load_override*>(Node<2u>*&) (basic_text_iarchive.hpp:70) ==584282== by 0x18A324: void boost::archive::text_iarchive_impl::load_override*>(Node<2u>*&) (text_iarchive.hpp:82) ==584282== by 0x189D0B: boost::archive::text_iarchive& boost::archive::detail::interface_iarchive::operator>>*>(Node<2u>*&) (interface_iarchive.hpp:68) ==584282== by 0x189779: boost::archive::text_iarchive& boost::archive::detail::interface_iarchive::operator&*>(Node<2u>*&) (interface_iarchive.hpp:75) ==584282== by 0x189084: void boost::serialization::load_construct_data(boost::archive::text_iarchive&, Edge<2u>*, unsigned int) (Edge.hpp:265) ==584282== by 0x188987: void boost::serialization::load_construct_data_adl >(boost::archive::text_iarchive&, Edge<2u>*, unsigned int) (serialization.hpp:140) ==584282== by 0x1881C9: boost::archive::detail::pointer_iserializer >::load_object_ptr(boost::archive::detail::basic_iarchive&, void*, unsigned int) const (iserializer.hpp:340) ==584282== by 0x62C99F4: ??? (in /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0) ==584282== by 0x1854FA: void boost::archive::detail::load_pointer_type::invoke*>(boost::archive::text_iarchive&, Edge<2u>*&) (iserializer.hpp:541) ==584282== by 0x18420E: void boost::archive::load*>(boost::archive::text_iarchive&, Edge<2u>*&) (iserializer.hpp:624) ==584282== by 0x182AF1: void boost::archive::detail::common_iarchive::load_override*>(Edge<2u>*&) (common_iarchive.hpp:67) ==584282== by 0x18055C: void boost::archive::basic_text_iarchive::load_override*>(Edge<2u>*&) (basic_text_iarchive.hpp:70) ==584282== by 0x17D416: void boost::archive::text_iarchive_impl::load_override*>(Edge<2u>*&) (text_iarchive.hpp:82) ==584282== by 0x179E31: boost::archive::text_iarchive& boost::archive::detail::interface_iarchive::operator>>*>(Edge<2u>*&) (interface_iarchive.hpp:68) ==584282== by 0x1730BC: TestEdge::TestArchiveEdge() (TestEdge.hpp:314) ==584282== by 0x17802A: TestDescription_TestEdge_TestArchiveEdge::runTest() (TestEdge.cpp:49) ==584282== by 0x163EDE: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==584282== by 0x16804C: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==584282== by 0x167F31: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==584282== by 0x167DD7: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==584282== by 0x167C3E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==584282== by 0x1682D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==584282== by 0x162BD0: main (TestEdge.cpp:19) ==584282== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN5boost7archive6detail15heap_allocationI4NodeILj2EEE24doesnt_have_new_operator10invoke_newEv fun:_ZN5boost7archive6detail15heap_allocationI4NodeILj2EEE10invoke_newEv fun:_ZN5boost7archive6detail15heap_allocationI4NodeILj2EEEC1Ev fun:_ZNK5boost7archive6detail19pointer_iserializerINS0_13text_iarchiveE4NodeILj2EEE15heap_allocationEv obj:/usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0 fun:_ZN5boost7archive6detail17load_pointer_typeINS0_13text_iarchiveEE6invokeIP4NodeILj2EEEEvRS3_RT_ fun:_ZN5boost7archive4loadINS0_13text_iarchiveEP4NodeILj2EEEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_iarchiveINS0_13text_iarchiveEE13load_overrideIP4NodeILj2EEEEvRT_ fun:_ZN5boost7archive19basic_text_iarchiveINS0_13text_iarchiveEE13load_overrideIP4NodeILj2EEEEvRT_ fun:_ZN5boost7archive18text_iarchive_implINS0_13text_iarchiveEE13load_overrideIP4NodeILj2EEEEvRT_ fun:_ZN5boost7archive6detail18interface_iarchiveINS0_13text_iarchiveEErsIP4NodeILj2EEEERS3_RT_ fun:_ZN5boost7archive6detail18interface_iarchiveINS0_13text_iarchiveEEanIP4NodeILj2EEEERS3_RT_ fun:_ZN5boost13serialization19load_construct_dataINS_7archive13text_iarchiveELj2EEEvRT_P4EdgeIXT0_EEj fun:_ZN5boost13serialization23load_construct_data_adlINS_7archive13text_iarchiveE4EdgeILj2EEEEvRT_PT0_j fun:_ZNK5boost7archive6detail19pointer_iserializerINS0_13text_iarchiveE4EdgeILj2EEE15load_object_ptrERNS1_14basic_iarchiveEPvj obj:/usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.74.0 fun:_ZN5boost7archive6detail17load_pointer_typeINS0_13text_iarchiveEE6invokeIP4EdgeILj2EEEEvRS3_RT_ fun:_ZN5boost7archive4loadINS0_13text_iarchiveEP4EdgeILj2EEEEvRT_RT0_ fun:_ZN5boost7archive6detail15common_iarchiveINS0_13text_iarchiveEE13load_overrideIP4EdgeILj2EEEEvRT_ fun:_ZN5boost7archive19basic_text_iarchiveINS0_13text_iarchiveEE13load_overrideIP4EdgeILj2EEEEvRT_ fun:_ZN5boost7archive18text_iarchive_implINS0_13text_iarchiveEE13load_overrideIP4EdgeILj2EEEEvRT_ fun:_ZN5boost7archive6detail18interface_iarchiveINS0_13text_iarchiveEErsIP4EdgeILj2EEEERS3_RT_ fun:_ZN8TestEdge15TestArchiveEdgeEv fun:_ZN40TestDescription_TestEdge_TestArchiveEdge7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==584282== LEAK SUMMARY: ==584282== definitely lost: 384 bytes in 2 blocks ==584282== indirectly lost: 0 bytes in 0 blocks ==584282== possibly lost: 0 bytes in 0 blocks ==584282== still reachable: 24 bytes in 2 blocks ==584282== suppressed: 700,618 bytes in 9,375 blocks ==584282== Reachable blocks (those to which a pointer was found) are not shown. ==584282== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==584282== ==584282== For lists of detected and suppressed errors, rerun with: -s ==584282== ERROR SUMMARY: 2 errors from 2 contexts (suppressed: 34 from 34)